BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20830.1
Length=2888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941635 jgi|Araly1|941635|scaffold_602179.1 3978 0.0
Ahg484788 jgi|Araly1|484788|fgenesh2_kg.5__780__AT3G43190.1 2392 0.0
> Ahg941635 jgi|Araly1|941635|scaffold_602179.1
Length=2470
Score = 3978 bits (2154), Expect = 0.0
Identities = 2367/2472 (96%), Gaps = 6/2472 (0%)
Strand=Plus/Plus
Query 62 TGTTATCTGCGTCTCTTTTTTGGATCAATGGCAAACGCTGAACGTATGATAACGCGCGTC 121
|||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTT-TCTGCGTCTC---TTTGAATCAATGGCAAACGCTGAACGTATGATAACGCGCGTC 56
Query 122 CACAGCCAACGTGAGCGTTTGAACGAAACGCTTGTTTCTGAGAGAAACGAAGTCCTTGCC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CACAGCCAACGTGAGCGTTTGAACGAAACGCTTGTTTCTGAGAGAAACGAAGTCCTTGCC 116
Query 182 TTGCTTTCCAGGGTTGAAGCCAAAGGTAAAGGTATTTTACAACAAAACCAGATCATTGCT 241
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 117 TTGCTTTCCAGGATTGAAGCCAAAGGTAAAGGTATTTTACAACAAAACCAAATCATTGCT 176
Query 242 GAATTCGAAGCTTTGCCTGAACAAACCCGGAAGAAACTTGAAGGTGGTCCTTTCTTTGAC 301
||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||
Sbjct 177 GAATTCGAAGCTTTGCCTGGAGAAACCCAGAAGAAACTTGAAGGTGGTCCTTTCTTCGAC 236
Query 302 CTTCTCAAATCCACTCAGGAAGCAATTGTGTTGCCACCATGGGTTGCTCTAGCTGTGAGG 361
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 CTTCTCAAATCCACTCAGGAAGCAATTGTGTTGCCACCATGGGTTGCTCTTGCTGTGAGA 296
Query 362 CCAAGGCCTGGTGTTTGGGAATACTTACGAGTCAATCTCCATGCTCTTGTCGTTGAAGAA 421
||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 297 CCAAGACCTGGTGTTTGGGAATACATAAGAGTCAATCTCCATGCTCTTGTGGTTGAAGAA 356
Query 422 CTCCAACCTGCTGAGTTTCTTCATTTCAAGGAAGAACTCGTTGATGGAGTTAAGAATGGT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTCCAACCTGCTGAGTTTCTTCATTTCAAGGAAGAACTCGTTGATGGAGTTAAGAATGGT 416
Query 482 AATTTCACTCTTGAGCTTGATTTCGAGCCATTCAATGCGTCTATCCCTCGTCCAACACTC 541
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 417 GATTTCACTCTTGAGCTTGATTTCGAACCATTCAATGCGTCTTTCCCTCGTCCAACACTC 476
Query 542 CACAAATACATTGGAAATGGTGTTGACTTCCTTAACCGTCATTTATCGGCTAAGCTCTTC 601
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 477 AACAAATACATTGGAAATGGTGTTGAGTTCCTTAACCGTCACTTATCAGCTAAGCTCTTT 536
Query 602 CATGACAAGGAGAGTTTGCTTCCATTGCTTAAGTTCCTTCGTCTTCACAGCCACCAGGGC 661
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 537 CATGACAAGGAGAGTTTGCTTCCATTGCTTAAGTTCCTTCGTCGACACAGCCACCAGGGC 596
Query 662 AAGAACCTGATGTTGAGCGAGAAGATTCAGAACCTCAACACTCTGCAACACACCTTGAGG 721
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 597 AAGAACCTGATGTTGAGTGAGAAAATTCAAAACCTCAACACTCTGCAACACACCTTGATG 656
Query 722 AAAGCAGAAGAGTATCTAGCAGAGCTTAAGTCC-GAAACACTGTATGAAGAGTTTGAGGC 780
|||||||| |||||||| |||||||||||| || ||||||| ||||||||||||||||||
Sbjct 657 AAAGCAGAGGAGTATCTTGCAGAGCTTAAG-CCTGAAACACCGTATGAAGAGTTTGAGGC 715
Query 781 CAAGTTTGAGGAGATTGGTCTTGAGAGGGGATGGGGAGACAATGCAGAGCGTGTCCTTGA 840
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 CAAGTTTGAGGAGATTGGTCTTGAGAGGGGATGGGGAGACAATGCTGAGCGTGTCCTTGA 775
Query 841 CATGATACGTCTTCTTTTGGACCTTCTTGAGGCGCCTGATCCTTGCACTCTTGAGACTTT 900
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CATGATCCGTCTTCTTTTGGACCTTCTTGAGGCGCCTGATCCTTGCACTCTTGAGACTTT 835
Query 901 TCTTGGAAGAGTACCAATGGTGTTCAACGTTGTGATCCTCTCTCCACATGGTTACTTTGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCTTGGAAGAGTACCAATGGTGTTCAACGTTGTGATCCTCTCTCCACATGGTTACTTTGC 895
Query 961 TCAGGACAATGTTCTTGGTTACCCTGACACTGGTGGACAGGTTGTTTACATTCTTGATCA 1020
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 896 TCAGGACAATGTTCTTGGTTACCCTGACACTGGTGGCCAGGTTGTGTACATTCTTGATCA 955
Query 1021 AGTTCGTGCTCTGGAGATAGAGATGCTTCAACGTATTAAGCAACAAGGACTCAACATTAA 1080
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 956 AGTTCGTGCTCTGGAAACAGAGATGCTTCAGCGTATTAAGCAACAAGGACTCAACATTAA 1015
Query 1081 ACCAAGGATTCTCATTCTAACTCGACTTCTACCTGATGCGGTAGGAACTACATGCGGTGA 1140
|||||| ||||||||||| |||||||| || ||||||||||||||||| ||||| |||||
Sbjct 1016 ACCAAGAATTCTCATTCTCACTCGACTCCTCCCTGATGCGGTAGGAACCACATGTGGTGA 1075
Query 1141 ACGTCTCGAGAGAGTTTATGATTCTGAGTACTGTGATATTCTTCGTGTGCCCTTCAGAAC 1200
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1076 ACGTCTCGAGAGAGTTTATGATTCTGAGTACTGTGATATTCTCCGTGTGCCCTTCCGAAC 1135
Query 1201 AGAGAAGGGTATTGTTCGCAAATGGATCTCAAGGTTCGAAGTCTGGCCATATCTAGAGAC 1260
||| |||||||| |||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 1136 AGAAAAGGGTATAGTTCGCAAATGGATCTCAAGATTTGAAGTTTGGCCATATCTAGAGAC 1195
Query 1261 TTACACCGAGGATGCTGCGGTTGAGCTATCGAAAGAATTGAATGGCAAGCCTGACCTTAT 1320
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1196 TTACACCGAGGATGCTGCGGTTGAGCTATCGAAAGAATTGAATGGAAAGCCTGACCTTAT 1255
Query 1321 CATTGGTAACTACAGTGATGGAAATCTTGTTGCTTCTTTATTGGCTCACAAACTTGGTGT 1380
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1256 CATTGGTAACTACAGTGATGGAAATCTTGTTGCCTCTTTATTAGCTCACAAACTTGGTGT 1315
Query 1381 CACTCAGTGTACCATTGCTCATGCTCTTGAGAAAACAAAGTACCCGGATTCTGATATCTA 1440
||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 1316 CACTCAGTGTACCATTGCTCATGCTCTGGAGAAGACAAAGTACCCGGATTCCGACATCTA 1375
Query 1441 CTGGAAGAAGCTTGACGACAAGTACCATTTCTCATGCCAGTTCACTGCGGATATTTTCGC 1500
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTGGAGGAAGCTTGACGAGAAGTACCATTTCTCATGCCAGTTCACTGCGGATATTTTCGC 1435
Query 1501 AATGAACCACACTGATTTCATCATCACTAGTACTTTCCAAGAAATTGCTGGAAGCAAAGA 1560
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1436 AATGAACCACACTGATTTCATCATCACCAGTACTTTCCAAGAAATTGCTGGAAGCAAGGA 1495
Query 1561 AACTGTTGGGCAGTATGAAAGCCACACAGCCTTTACTCTTCCCGGATTGTATCGAGTTGT 1620
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1496 CACTGTTGGGCAGTATGAAAGCCACACGGCCTTTACTCTTCCCGGATTGTACCGAGTTGT 1555
Query 1621 TCACGGGATTGATGTGTTTGATCCCAAGTTCAACATTGTCTCTCCTGGTGCTGATATGAG 1680
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1556 TCACGGGATCGATGTGTTTGATCCCAAGTTCAACATTGTCTCCCCTGGTGCTGATATGAA 1615
Query 1681 CATCTACTTCCCTTACACAGAGGAGAAGCGTAGATTGACTAAGTTCCACTCTGAGATCGA 1740
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1616 CATCTACTTCCCTTACACAGAGGAGAAGCGTAGATTGACTAAATTCCACTCTGAGATCGA 1675
Query 1741 GGAGCTCCTCTACAGCGATGTTGAGAACAAAGAGCACTTATGTGTGCTCAAGGACAAGAA 1800
||||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||
Sbjct 1676 GGAGCTCCTCTACAGCGATGTCGAGAACGAAGAGCACCTGTGTGTCCTCAAGGACAAGAA 1735
Query 1801 GAAGCCGATTCTCTTCACAATGGCTAGGCTTGATCGTGTCAAGAACTTGTCAGGTCTTGT 1860
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1736 GAAGCCGATCCTCTTCACAATGGCTAGGCTCGACCGTGTCAAGAACTTGTCAGGTCTTGT 1795
Query 1861 TGAGTGGTACGGGAAGAACACCCGCTTGCGTGAGCTAGCTAACTTGGTTGTTGTTGGAGG 1920
||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||
Sbjct 1796 TGAGTGGTACGGGAAGAACACCCGCCTGCGTGAGCTGGCTAACTTGGTGGTTGTGGGAGG 1855
Query 1921 AGACAGGAGGAAAGAGTCAAAGGACAATGAAGAGAAAGCAGAGATGAAGAAAATGTATGA 1980
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 AGACAGGAGGAAAGAATCAAAGGACAATGAAGAGAAAGCAGAGATGAAGAAAATGTATGA 1915
Query 1981 TCTCATTGAGGAATACAAGCTAAACGGTCAGTTCAGGTGGATCTCCTCTCAGATGGACCG 2040
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1916 TCTCATTGAAGAATACAAGCTCAACGGTCAGTTCAGGTGGATCTCCTCTCAGATGAACCG 1975
Query 2041 GGTAAGGAACGGTGAGCTGTACCGGTACATCTGTGACACCAAGGGTGCTTTTGTCCAACC 2100
||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 1976 GGTTAGGAACGGTGAGCTGTACAGGTACATCTGTGACACCAAGGGTGCATTTGTGCAACC 2035
Query 2101 TGCATTATATGAAGCCTTTGGGTTAACTGTTGTGGAGGCTATGACTTGTGGTTTACCGAC 2160
|||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 2036 TGCATTGTATGAAGCCTTTGGGTTGACTGTTGTGGAGGCCATGACTTGTGGATTACCGAC 2095
Query 2161 TTTCGCCACTTGCAAAGGTGGTCCAGCTGAGATCATTGTGCACGGTAAATCGGGTTTCCA 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TTTCGCCACTTGCAAAGGTGGTCCAGCTGAGATCATTGTGCACGGTAAATCGGGTTTCCA 2155
Query 2221 CATTGACCCTTACCATGGTGATCAGGCTGCTGATACTCTTGCTGATTTCTTCACCAAGTG 2280
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 CATTGACCCTTACCATGGTAATCAGGCTGCTGATACTCTTGCTGATTTCTTCACCAAGTG 2215
Query 2281 TAAGGAGGATCCATCTCACTGGGATGAGATCTCAAAAGGAGGGCTTCAGAGGATTGAGGA 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 TAAGGAGGATCCATCTCACTGGGATGAGATCTCAAAAGGAGGGCTTCAGAGGATTGAGGA 2275
Query 2341 GAAATACACTTGGCAAATCTATTCACAGAGGCTCTTGACATTGACTGGTGTGTATGGATT 2400
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 2276 GAAATACACTTGGCAAATCTACTCACAGAGGCTCCTGACACTGACTGGTGTGTATGGATT 2335
Query 2401 CTGGAAGCATGTCTCGAACCTTGACCGTCTTGAGGCTCGCCGTTACCTTGAAATGTTCTA 2460
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 2336 CTGGAAGCATGTCTCGAACCTTGACCATCTTGAGGCCCGCCGTTACCTTGAAATGTTCTA 2395
Query 2461 TGCATTGAAGTATCGCCCATTGGCTCAGGCTGTTCCTCTTGCACAAGATGATTGAAGAGA 2520
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2396 TGCATTGAAGTATCGCCCATTGGCTCAGGCTGTTCCTCTTGCTCAAGATGATTGAAGAGA 2455
Query 2521 AGAGAAAAGACT 2532
||||||||||||
Sbjct 2456 AGAGAAAAGACT 2467
> Ahg484788 jgi|Araly1|484788|fgenesh2_kg.5__780__AT3G43190.1
Length=2725
Score = 2392 bits (1295), Expect = 0.0
Identities = 2083/2463 (85%), Gaps = 55/2463 (2%)
Strand=Plus/Plus
Query 88 AATGGCAAACGCTGAACGTATGATAACGCGCGTCCACAGCCAACGTGAGCGTTTGAACGA 147
|||||||||||| |||||| | |||||||||||||||||||| || ||||||||| | |
Sbjct 123 AATGGCAAACGCGGAACGTGTAATAACGCGCGTCCACAGCCAGCGAGAGCGTTTGGATGC 182
Query 148 AACGCTTGTTTCTGAGAGAAACGAAGTCCTTGCCTTGCTTTCCAGGGTTGAAGCCAAAGG 207
|| ||| || || ||| ||| ||||||||||| ||||| || |||||||||||||||||
Sbjct 183 TACTCTTATTGCTCAGAAAAATGAAGTCCTTGCTTTGCTCTCAAGGGTTGAAGCCAAAGG 242
Query 208 TAAAGGTATTTTACAACAAAACCAGATCATTGCTGAATTCGAAGCTTTGCCTGAACAAAC 267
||||| ||| ||||| | |||||||||||||||| || || || ||||| | | ||
Sbjct 243 CAAAGGCATTCTACAATATCACCAGATCATTGCTGAGTTTGAGGCAATGCCTTTAGAGAC 302
Query 268 CCGGAAGAAACTTGAAGGTGGTCCTTTCTTTGACCTTCTCAAATCCA-CTCAGGAAGCAA 326
| ||||| ||| ||||||| ||||||| || | ||| | || |||| |||||||
Sbjct 303 ACAAAAGAAGCTTCAAGGTGGAGCTTTCTTCGAAATCCTC-CGTTCAGCTCAAGAAGCAA 361
Query 327 TTGTGTTGCCACCATGGGTTGCTCTAGCTGTGAGGCCAAGGCCTGGTGTTTGGGAATACT 386
||||||| ||||||| |||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct 362 TTGTGTTACCACCATTTGTTGCTTTAGCTGTGAGACCAAGACCTGGAGTTTGGGAATACG 421
Query 387 TACGAGTCAATCTCCATGCTCTTGTCGTTGAAGAACTCCAACCTGCTGAGTTTCTTCATT 446
|| |||| || ||||||| |||||||||||| || || ||| || |||| | |||||| |
Sbjct 422 TAAGAGTTAACCTCCATGATCTTGTCGTTGACGAGCTTCAAGCTTCTGAATATCTTCAAT 481
Query 447 TCAAGGAAGAACTCGTTGATGGAGTTAAGAATGGTAATTTCACTCTTGAGCTTGA-TTTC 505
|||||||||| ||||| |||||| ||| ||||||||| |||||||| |||||||| |||
Sbjct 482 TCAAGGAAGAGCTCGTCGATGGAATTAGGAATGGTAACTTCACTCTCGAGCTTGACTTT- 540
Query 506 GAGCCATTCAATG-CGTCTA-TCCCTCGTCCAACACTCCACAAATACATTGGAAATGGTG 563
|| |||||||| | || | | |||||||||| || ||| |||| |||||||||||||| |
Sbjct 541 GAACCATTCAACGCCG-C-ATTCCCTCGTCCCACGCTCAACAAGTACATTGGAAATGGGG 598
Query 564 TTGACTTCCTTAACCGTCATTTATCGGCTAAGCTCTTCCATGACAAGGAGAGTTTGCTTC 623
|||| ||||| || || ||| | ||||||||||||||||||||||||||||| |||| ||
Sbjct 599 TTGAGTTCCTCAATCGCCATCTCTCGGCTAAGCTCTTCCATGACAAGGAGAGCTTGCATC 658
Query 624 CAT-TGCTTAAGTTCCTTCGTCTTCACAGCCACCAGGGCAAGAAC-CTGATG-TTGAGCG 680
| | |||| |||||||| || || || |||| |||||||| || |||||| || | ||
Sbjct 659 C-TCTGCTCAAGTTCCTGCGCCTCCATTCCCACGAGGGCAAG-ACTCTGATGCTT-AACG 715
Query 681 AGAAGATTCAGAACCTCAACACTCTGCAACAC-ACCTTGAGGAAAGCAGAAGAGTATC-T 738
| | ||| |||||||| ||||| ||||||||| | | ||||||||||||| ||||||| |
Sbjct 716 ACAGGATCCAGAACCTAAACACACTGCAACACAATC-TGAGGAAAGCAGAGGAGTATCTT 774
Query 739 AGCAGAGCTTAAGTCCGAAACACTGTA-TGAAGAGTTTGAGGC-CAAGTTTGAGGAGATT 796
| ||||| || |||| |||| || | |||||||| | |||||| ||| ||||
Sbjct 775 A-TGGAGCTGAAACCCGAGACACCCTACT-CGGAGTTTGA-CCACAAGTTCCAGGGGATT 831
Query 797 GGTCTTGAGAGGGGATGGGGAGACAATGCAGAGCGTGTCCTTGACATGATACGTCTTCTT 856
||||||||||| || |||||||||| || | |||||| ||||||||||| |||||||||
Sbjct 832 GGTCTTGAGAGAGGTTGGGGAGACACCGCGGTGCGTGTACTTGACATGATTCGTCTTCTT 891
Query 857 -TTGGACCTTCTTGAGGCGCCTGATCCTTGCACTCTTGAGACTTTTCTTGGAA-GAGTAC 914
|| |||||||| ||||| ||||| |||| |||||||| || ||| ||||||| || |||
Sbjct 892 CTT-GACCTTCTCGAGGCACCTGACCCTTTCACTCTTGGGAATTTCCTTGGAAGGA-TAC 949
Query 915 CAATGGTGTTCAACGTTGTGATCCTCTCTCCACATGGTTACTTTGCTCAGGACAATGTTC 974
||||||| ||||||||||||||| | ||||||||||| |||||||||||||| |||||||
Sbjct 950 CAATGGTTTTCAACGTTGTGATCTTATCTCCACATGGATACTTTGCTCAGGATAATGTTC 1009
Query 975 TTGGTTACCCTGACACTGGTGGACAGGTTGTTTACATTCTTGATCAAGTTCGTGCTCTGG 1034
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1010 TTGGTTACCCTGACACTGGTGGTCAGGTTGTTTACATTCTTGATCAAGTTCGTGCTCTCG 1069
Query 1035 AGATAGAGATGCTTCAACGTATTAAGCAACAAGGACTCAACATTAAACCAAGGATTCTCA 1094
| | ||||||||| ||||| || || ||||||||||||| ||| | || || || || |
Sbjct 1070 AAACAGAGATGCTCCAACGCATCAAACAACAAGGACTCACCATCACTCCGAGAATCCTAA 1129
Query 1095 TTCTAACTCGACTT-CTACCTGATGCGGTAGGAACTACATGCGGTGAACGTCTCGAGAGA 1153
|| | ||||| || || |||||||| | |||||| || || ||| ||||||| |||| |
Sbjct 1130 TTATCACTCG-GTTGCTTCCTGATGCAGCAGGAACCACTTGTGGTCAACGTCTAGAGAAA 1188
Query 1154 GTTTA-TGATTCTGAGTACTGTGATATTCTTCGTGTGCCCTTCAGAACAGAGAAGGGTAT 1212
|| || || ||| |||| |||||||| || ||||| || || ||||||||||| || ||
Sbjct 1189 GTGTACGGA-TCTCAGTATTGTGATATCCTCCGTGTACCTTTTAGAACAGAGAAAGGAAT 1247
Query 1213 TGTTCGCAAATGGATCTCAAGGTTCGAAGTCTGGCCATATCTAGAGACTTACACCGAGGA 1272
||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||
Sbjct 1248 CGTTCGCAAATGGATCTCAAGGTTTGAGGTCTGGCCGTATCTAGAGACTTTTACCGAGGA 1307
Query 1273 TGCTGCGGTTGAGCTATCGAAAGAATTGA-ATGGCAAGCCTGACCTTATCATTGGTAACT 1331
|| ||| | ||| | ||||| || || | | || || ||||||||||||||||| ||||
Sbjct 1308 TGTTGCAGCTGAAATCTCGAATGAGTT-ACAAGGGAAACCTGACCTTATCATTGGAAACT 1366
Query 1332 ACAGTGATGGAAATCTTGTTGCTTCTTTATTGGCTCACAAACTTGGTGTCACTCAGTGTA 1391
| |||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1367 ATAGTGATGGTAATCTTGTTGCCTCTTTGTTAGCACACAAACTTGGTGTCACTCAGTGTA 1426
Query 1392 CCATTGCTCATGCTCTT-GAGAAAACAAAGTACCCGGATTCTGATATCTACTGGAAGAAG 1450
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1427 CCATTGCTCATGCT-TTGGAGAAGACTAAGTACCCGGATTCTGATATCTACTGGAAGAAG 1485
Query 1451 CTTGACGACAAGTACCATTTCTCATGCCAGTTCACTGCGGATATTTTCGCAATGAACCAC 1510
|||||||| ||||| || ||||| |||||||||||||| ||| || |||| |||||||||
Sbjct 1486 CTTGACGAGAAGTATCACTTCTCTTGCCAGTTCACTGCTGATCTTATCGCCATGAACCAC 1545
Query 1511 ACTGATTTCATCATCACTAGTACTTTCCAAGAAATTGCTGGAAGCAAAGAAACTGTTGGG 1570
|| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1546 ACAGATTTCATCATCACAAGTACTTTCCAAGAAATTGCTGGAAGCAAGGACACTGTTGGT 1605
Query 1571 CAGTATGAAAGCCACACAGCCTTT-ACTCTTCCCGGATTGTATCGAGTTGTTCACGGGAT 1629
||||| || || |||||||| ||| || |||||||| | ||||| || |||||||||||
Sbjct 1606 CAGTACGAGAGTCACACAGC-TTTCACACTTCCCGGGCTATATCGTGTGGTTCACGGGAT 1664
Query 1630 TGATGTGTTTGATCCCAAGTTCAACATTGTCTCTCCTGGTGCTGATATGAGCATCTACTT 1689
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1665 CGATGTGTTTGATCCCAAGTTCAACATTGTCTCTCCTGGTGCGGATATGAGCATATACTT 1724
Query 1690 C-CCTTACACAGAGGAGAAGCGTAGATTGACTA-AGTTCCACTCT-GAGATCGAGGAGCT 1746
| ||| |||| ||||||||||||||||| ||| | ||||| || ||||| ||||||||
Sbjct 1725 CGCCT-ACACTGAGGAGAAGCGTAGATTAACTGCA-TTCCA-TCAAGAGATTGAGGAGCT 1781
Query 1747 CCTCTACAGCGATGTTGAGAAC-AAAGAGCACTTATGTGTGCTCAAGGACAAGAAGAAGC 1805
||||||||| |||||||||||| ||| ||||| |||||||||| ||||||||||||||||
Sbjct 1782 CCTCTACAGTGATGTTGAGAACGAAA-AGCACCTATGTGTGCTAAAGGACAAGAAGAAGC 1840
Query 1806 CGATTCTCTTCACAATGGCTAGGCTTGATCGTGTCAAGAACTTGTCAGGTCTTGTTGAGT 1865
| || |||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1841 CAATCCTCTTCACCATGGCTAGGCTTGACCGTGTAAAGAACTTATCAGGTCTTGTTGAGT 1900
Query 1866 GGTACGGGAAGAACACCCGCTTGCGTGAGCTAGCT-AACTTGGTTGTTGTTGGAGGAGAC 1924
|||| || |||||||| ||| |||| || || | | |||||||| ||||| || ||||||
Sbjct 1901 GGTATGGTAAGAACACTCGCCTGCGCGAACTGG-TGAACTTGGTCGTTGTGGGTGGAGAC 1959
Query 1925 AGGAGGAAAGAGTCAAAGGACAATGAAGAGAAAG-CAGAGATGAAGAAAATGTATGATCT 1983
||||| |||||||| ||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 1960 AGGAGCAAAGAGTCGCAGGACAATGAAGA-AAAGGCTGAGATGAAGAAAATGTATGATCT 2018
Query 1984 CATTGAGGAATACAAGCTAAACGGTCAGTT-CAGGTGGATCTCCTCTCAGATGGACCGGG 2042
|||||||||||||| || ||||| ||||| | | ||||||||||| |||||| |||| |
Sbjct 2019 GATTGAGGAATACAAACTTAACGGGCAGTTTC-GATGGATCTCCTCACAGATGAACCGAG 2077
Query 2043 TAAGGAACGGTGAGCTGTACCGGTACATCTGTGACACCAAGGGTGCTTTTGTCCAACCTG 2102
| || ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||
Sbjct 2078 TGAGAAACGGCGAGCTTTACCGTTACATATGTGACACCAAAGGTGCATTTGTACAGCCTG 2137
Query 2103 CA-TTATATGAAGCCTTTGGGTTAACTGTTGTGGAGGCTATGACTTGTGGTTTACCGACT 2161
| || ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 2138 CTCTT-TATGAAGCCTTTGGGTTGACTGTTGTTGAGGCTATGACCTGTGGGTTACCGACT 2196
Query 2162 TTCGCCACTTGCAAAGGTGGTCCAGCTGAGATCATTGTGCACGGTAAATCGGGTTTCCAC 2221
||||| |||||||| |||||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 2197 TTCGCTACTTGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTTCCAC 2256
Query 2222 ATTGACCCTTACCATGGTGATCAGGCTGCTGATACTCTTGCTGATTTCTTCACCAAGTGT 2281
||||| || ||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 2257 ATTGATCCATACCATGGTGACCAGGCAGCTGAGACGCTTGCTGATTTCTTCACCAAGTGT 2316
Query 2282 AAGGAGGATCCATCTCACTGGGATGAGATCTCAAAAGGAGGGCTTCAGAGGATTGAGGAG 2341
||| | || |||||||| |||||| |||| ||| ||||| ||| ||||||| |||||
Sbjct 2317 AAGCATGACCCATCTCATTGGGATCAGATTTCATTGGGAGGACTTGAGAGGATCCAGGAG 2376
Query 2342 AAATACACTTGGCAAATCTATTCACAGAGGCTCTTGACATTGACTGGTGTGTATGGATTC 2401
||||| || |||||||| || ||| ||||||||||||||||||||||||| || || |||
Sbjct 2377 AAATATACATGGCAAATTTACTCAGAGAGGCTCTTGACATTGACTGGTGTCTACGGCTTC 2436
Query 2402 TGGAAGCATGTCTCGAACCTTGACCGTCTTGAG-GCTCGCCGTTACCTTGAAATGTTCTA 2460
||||| ||||||||||||||||||||||||||| | ||| || |||||||| ||||||||
Sbjct 2437 TGGAAACATGTCTCGAACCTTGACCGTCTTGAGAG-TCGTCGATACCTTGAGATGTTCTA 2495
Query 2461 TGCATTGAAGTATCGCCCATTGGCTCAGGCTGTTCCTCTTGCACAAGATGATTGAAGAGA 2520
||||||||||| |||||| ||||||| |||||||||||||| || || || |||| |||
Sbjct 2496 CGCATTGAAGTACCGCCCACTGGCTCAAGCTGTTCCTCTTGCTCAGGAAGAGTGAA-AGA 2554
Query 2521 AGA 2523
|||
Sbjct 2555 AGA 2557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109014281190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5