BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20840.1 Length=3678 Score E Sequences producing significant alignments: (Bits) Value Ahg488990 jgi|Araly1|488990|fgenesh2_kg.6__2124__AT5G20840.1 4735 0.0 Ahg484790 jgi|Araly1|484790|fgenesh2_kg.5__782__AT3G43220.1 1971 0.0 > Ahg488990 jgi|Araly1|488990|fgenesh2_kg.6__2124__AT5G20840.1 Length=3386 Score = 4735 bits (2564), Expect = 0.0 Identities = 2902/3060 (95%), Gaps = 44/3060 (1%) Strand=Plus/Plus Query 541 TTTCGATTTT-GAATATTGGTGAATGCTCCGGCGAGAT-TATTCTCTCAGCCCATCGGCT 598 ||| |||||| |||| |||||||||||||||||||||| |||||||||||||| || || Sbjct 350 TTTTGATTTTGGAAT-TTGGTGAATGCTCCGGCGAGATAAATTCTCTCAGCCCAGCGTCT 408 Query 599 TGGGCTTAGATCTGTAAATCAAAAGGAACCAATAAT-TGAGAAATCAGCTATGACCTCAT 657 |||||||||||||||||||| ||| | | || | | | ||||||||||||||||||| Sbjct 409 TGGGCTTAGATCTGTAAATC-AAA-G-TTC-AT--TGTCA-AAATCAGCTATGACCTCAT 461 Query 658 CGCCATCAGTGGAGAATGGCGGCTCAGGCTCCTCTGGATCATCTGCTCTTTTAGGCTGTA 717 |||||||| |||||||||| ||||| ||||||||||| || ||||||||| ||||||||| Sbjct 462 CGCCATCAATGGAGAATGGAGGCTCTGGCTCCTCTGGCTCCTCTGCTCTTCTAGGCTGTA 521 Query 718 TGCAACAATTCAAGCTCTTCGAGACTCAAGCGAATTTCTATATGATTGGTTGGAACGGTA 777 ||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||| | || Sbjct 522 TGCAAGAATTCAAACTCTTCGAGACTCAATCGAATTTCTACATGATTGGTTGGAATGCTA 581 Query 778 GTGGAGTATATAGAATACTTAAGATAGACCGGCTCGAAGCATCTGAGCTTAATCTCAGAG 837 ||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||||||| Sbjct 582 GTGGAGTCTATAGAATACTAAAGATAGACCGCCTCGATGCGTCTGAGCTTAATCTCAGAG 641 Query 838 AGGATTCGACTGCGTATACCAAAAAAGAATGCTACGAGTTGCTTAAACGGATACACGAAG 897 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 AGGATTCGACTGCTTATACCAAAAAAGAATGCTACGAGTTGCTTAAACGGATACACGAAG 701 Query 898 GAAACAAGGCGACTGGTGGACTGAAACTTGTCACTGTTTGTTATGGAATCATTGGGTTCA 957 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 702 GAAACAAGGTGACTGGTGGACTCAAACTTGTCACTGTTTGTTATGGAATCATTGGGTTCA 761 Query 958 TTAAGTTTTTGGGACCATATTACATGCTGCTTATAACTGAAAGAAGAGAGATAGGTGAAA 1017 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 762 TTAAGTTTTTGGGACCATACTACATGCTGCTTATAACTGAAAGAAGAGAGATCGGTGAAA 821 Query 1018 TTTGTGGTCACATTGTTTACGAAGTGTCAAAGAGTGATATGATTGCATTGCAACATTCTA 1077 |||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||||| Sbjct 822 TTTGTGGTCACAGTGTTTATGAAGTGTCAAAGAGTGATATAATTGCATTGCAAAATTCTA 881 Query 1078 GCGTGCTTTGCAACACTGCAAATTTAAGAGACGAGAACAGGTACAAGAGACTCCTGTGTA 1137 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 882 GCGTGCTTTGCAACACTGCAAATTCAAGAGACGAAAACAGGTACAAGAGACTCCTGTGTA 941 Query 1138 TGGTGGACCTTACGAAAGACTTCTTTTTCAGCTATTCTTACAATATAATGCGAAGTTTCC 1197 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 942 TGGTGGACCTTACAAAAGACTTCTTTTTCAGCTATTCGTACAATATAATGCGAAGTTTCC 1001 Query 1198 AGAAGAATATATGCGACCATGAGAGTGGAGGTACTCTCTATAAGAAAATGTTTGTGTGGA 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 AGAAGAATATATGCGACCATGAGAGTGGAGGTACTCTCTATAAGAAAATGTTTGTGTGGA 1061 Query 1258 ACGAATTCTTGACTCGGGGAACTCGACATCACCTTCGGAATACCCTGTGGACTGTAGCAT 1317 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 ATGAATTCCTGACTCGGGGAACTCGACATCACCTTCGGAATACCCTGTGGACTGTAGCAT 1121 Query 1318 TGGTGTATGGGTTTTTTAAGCAGACAATACTTTCCGAAGCTGGACGGAATTTCAAACTCA 1377 |||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 1122 TGGTGTATGGTTTTTTTAAGCAGACAACACTTTCTGAAGCTGGACGGAATTTCAAACTCA 1181 Query 1378 CTCTTATTGCTAGGCGTTCCCGCCATAATGCTGGAACCAGGTACTTGAAACGAGGAATAA 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 CTCTTATTGCTAGGCGTTCCCGCCATAATGCTGGAACCAGGTACTTGAAACGAGGAATAA 1241 Query 1438 ACGAAAGTGGCAATGTTGCTAATGATGTGGAAACAGAACAGATAGTGTCTGAGGATGTTC 1497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1242 ACGAAAGTGGCAATGTTGCTAATGATGTGGAAACAGAGCAGATAGTGTCTGAGGACGTTC 1301 Query 1498 CAGTAGACCGTCCCATGCAAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCTCTAT 1557 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1302 CTGTAGACCGTCCCATGCAAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCTCTAT 1361 Query 1558 TCTGGTCACAGGAGACCTCACGGATGAAAGTTAAGCCTGATATAGTATTGTCAAAAAGGG 1617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 TCTGGTCACAGGAGACCTCACGGATGAAAGTTAAGCCTGATATAGTATTGTCAAAAAGGG 1421 Query 1618 ACCTGAACTATGAGGCAACTAGAGTTCACTTTGAAAATCTTGTGGAGCGTTATGGAGTCC 1677 ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||| Sbjct 1422 ACCTGAACTATGAGGCAACTAGACTTCACTTTGAAAACCTTGTGGAGCGATATGGAATCC 1481 Query 1678 CCATCATTATTCTGAACTTGATCAAGACCAACGAGAGGAAACCCAGGGAGTCGATTCTCC 1737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1482 CCATCATTATTCTGAACTTGATCAAGACCAACGAGAGGAAACCCAGGGAGTCGATTCTCC 1541 Query 1738 GGGCAGAGTTTGCTAATGCAATTGACTTTATAAACAAAGATCTGCCGGAAGAAAATCGGC 1797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1542 GGGCAGAGTTTGCTAATGCAATTGACTTTATAAACAAAGATCTGCCGGAAGAAAATCGGC 1601 Query 1798 TTAGATTCCTCCACTGGGACTTGCACAAACATTTTCACAGCAAAACAGAAAATGTATTGG 1857 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1602 TTAGATTCCTCCATTGGGACTTGCACAAACATTTTCACAGCAAAACAGAAAACGTATTGG 1661 Query 1858 CACTTCTTGGAAAAGTAGCTGCCTGTGCTTTGATGCTAACAGGTTTCTTTTATTATCAAC 1917 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1662 CACTTCTTGGAAAAGTAGCTGCTTGTGCTTTGATGCTAACAGGGTTCTTTTATTATCAAC 1721 Query 1918 TTACACCAGCAATGAAGCTTGAGGGTTATATGAGCTTGTCTTCGTCTGATGCCGACACGT 1977 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || Sbjct 1722 TTACACCAGCAATGAAGCTTGAGGGTTATATGAGCTTGTCTTCATCTGATGCCGATATGT 1781 Query 1978 CTCCACATAATAGTTCTGATGATGATAGTAGGGATTATGACTCATTAGAGAAGAATTGCC 2037 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 1782 CTCCACATAATAGTTCTGATGATGATAGTAGGGATTGTGACTCATTAGAGAAGAGTTTTC 1841 Query 2038 GCCCAAGTAAGAATGTTGCAAATGGTGATTATGATGTCAAGCCTAGCAGGCTCCAGAGTG 2097 ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| | Sbjct 1842 GCCCAAGTAAGAATGTTACAAATGGCGATTATGATACCAAGCCTAGCAGGCTCCAGAGGG 1901 Query 2098 GAGTGCTGCGGACCAACTGCATAGATTGCCTTGATCGTACAAATGTTGCCCAATATGCAT 2157 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1902 GAGTGCTGAGGACTAACTGCATAGATTGCCTTGATCGTACAAATGTTGCCCAATATGCAT 1961 Query 2158 ATGGTTGGGCTGCTCTAGGGCAACAGCTTCATGCTTTAGGAATTAGAGATGCTCCAACAA 2217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1962 ATGGTTGGGCTGCTCTAGGGCAACAGCTTCATGCTTTAGGAATTAGAGATGCTCCAACAA 2021 Query 2218 TAGAACTTGATGATCCTTTGTCTAGTACTTTAATGGGGTTATACGAGAGAATGGGAGACA 2277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2022 TAGAACTTGATGATCCTTTGTCTAGTACTTTAATGGGGTTATACGAGAGAATGGGAGACA 2081 Query 2278 CACTAGCTTATCAATATGGTGGATCTGCAGCCCACAATAAGGTTTTTAGTGAAAGGCGAG 2337 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2082 CTCTAGCTTATCAATATGGTGGATCTGCAGCCCACAATAAGGTTTTTAGTGAAAGGCGAG 2141 Query 2338 GCCAGTGGAGAGCAGCAACCCAGTCACAAGAGTTCTTGAGGACTCTGCAACGTTATTATA 2397 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2142 GACAGTGGAGAGCAGCAACCCAGTCACAAGAGTTCTTGAGGACTCTGCAACGTTACTATA 2201 Query 2398 ATAACGCATATATGGATGCGGATAAACAAGATGCCATTAATATATTTCTTGGTACTTTCC 2457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2202 ATAACGCATATATGGATGCGGATAAACAAGATGCCATTAATATATTTCTTGGTACTTTCC 2261 Query 2458 GGCCTGAACAAGGGAGCCAGGCGGTTTGGGAGTTGCGTTCAGATTCCCACTCTAATGGAC 2517 | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2262 GTCCTGAACAAGGGAGTCAGGCGGTTTGGGAGTTGCGTTCAGATTCCCACTCCAATGGAC 2321 Query 2518 GAAGTGGAGAGATAAGCATGGGGGAAGATGAAAAGTTTCTTGTAAAGAGGTGCTTATCAG 2577 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 2322 GAAGTGGAGAGATAAGCATGGGGGAAGATGAAAGGTTTCTTGTGAAGAGGTGCTTATCAG 2381 Query 2578 ATGGGAATATTCTCCATGAAAGTCACACTCCGATGTCTGCAATGAGTAGAAAGAATGAAA 2637 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 2382 ATGGGAATATTCTCCATGAAAGTCACACTCCGATGTCCGCAATGAGTAGGAAGAGTGAAA 2441 Query 2638 GCATATCACATAGAGGTTTTGTGTCGTCACACCAAGTGACTCGTACTCATATAATTTCAG 2697 |||||||||||| ||||||||||||||||||||||||||||| | | ||| | |||||| Sbjct 2442 GCATATCACATAAAGGTTTTGTGTCGTCACACCAAGTGACTC--A-T-ATA-A-TTTCAG 2495 Query 2698 AATCATCACCAGATATGCCAGCTGCCGGTGATGTAACATTATCGAGGTGTACTCCGTCAA 2757 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2496 AGTCATCACCAGATATGCCAGCTGCCGGTGATGTAACATTATCGAGGTGTACTCCGTCAA 2555 Query 2758 TGCCTAGCACACAtttttttGGAGATGTCCAAAAAGTTCAACATAATGGTAGTAGCTCCA 2817 ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 2556 TGCCTAGCACACATTTTTTTGGAGATGCCCAAAAAATTCAACATAATGGTAGTAGCTCCA 2615 Query 2818 TTTACTTGTCCGAGCAAGAAGATATGTCTAGTGTCTCAAATTTCGTTGATATTGAGTGGC 2877 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2616 TTTACTTGTCCGAGCAAGAAGATATGTCTAGTGTCTCAAATTTTGTTGATATTGAGTGGC 2675 Query 2878 TTTCGTCGTCAGAAAATCTATGTGAGAACGATCACTTGTCCAGGCCGTCAGCGCTTACAA 2937 |||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||| Sbjct 2676 TTTCGTCGTCGGAAAATCTATGTGAGAACGATCAATTGTCCAGGCCGTTAGCGGTTACAA 2735 Query 2938 TATATTCAACCGCAGAGACGTCTTCATCAGAGAATATCATCACTGAAGTAAAACAATT-G 2996 |||| |||||||| ||||||||||||||||||||||| |||||||||| |||||| || | Sbjct 2736 TATACTCAACCGCGGAGACGTCTTCATCAGAGAATATTATCACTGAAGCAAAACA-TTCG 2794 Query 2997 ACGCCAGCTATGAGA-GAGAGTGGATCAAGCAGCAGGAAGGGAAAAGAACCAGTGGAAAC 3055 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2795 ACGCCAGCTATGA-ACGAGAGTGGATCAAGCAGCAGGAAGGGAAAAGAACCAGTGGAAAC 2853 Query 3056 CGAACTGTCTGTACACACAAAGATTCGCGATGATTTCCCAGATAGCTTCAAACAATGGGT 3115 ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 2854 CGAACTGTCTGTACACACAAATATTCGGGATGATTTTCCAGATAGCTTCAAACAATGGGT 2913 Query 3116 AGCATACGGGGAAGCACTCTGCCATTGAAGATCTCTCAACTTTCCATTTCCAACAAAGAA 3175 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| Sbjct 2914 AGCATACGGGGAAGCACTCTGCCATTGAAGCTCTCTCAACCTTCCATTTCCAACAA-GAA 2972 Query 3176 CATACTTTGCTTTCACCAAACTTAAAAGTCTTCT-GAACATTTGGGTATAACGGTGCAAA 3234 | |||||||| |||||| |||||| ||||||| || |||||||||||||||||||||| Sbjct 2973 CGTACTTTGCCTTCACCTTACTTAAG-GTCTTCTTGA-CATTTGGGTATAACGGTGCAAA 3030 Query 3235 CATGGAGAAGCGACTGGT-G----GAAAGATCCTCAGTACCATGTATATGAGGCTTCACG 3289 |||||||||||||||||| | ||||||| | ||||||||||||| |||||||||||| Sbjct 3031 CATGGAGAAGCGACTGGTAGAAAAGAAAGATTCGCAGTACCATGTATCTGAGGCTTCACG 3090 Query 3290 GTGACGACCGAACGGTCAAAAGAGAT-AGAACTATTAAGAGGAGCAAATACTAAATAAGC 3348 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3091 GTGACGGCCGAACGGTCAAAAGAGATTAGAACTATTAAGAGGAGCAAATACTAAATAAGC 3150 Query 3349 TGAGAAGTTTGAGTTTGCAGTCTTGCAGAGAAAACGAAAATTTCATCTTTATGGAGAGAA 3408 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 3151 TGAGAAGTTTGAGTTTGCAGTCTTGCAGAGAAAAGGAAAATTTCATCTTTATGGAGA-AA 3209 Query 3409 G-AAATTAAACTTGTGATAATCTGAGACTTTTGTTAGGGTCtttttttGGGGGGTTTGAA 3467 | |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 3210 GGAAATTAAACTTGTGATAATCTGAGACTTTTGTTAGGGTCTTTTTTTTGGG--TTTGAA 3267 Query 3468 GTCT--GTTGTAAATAT--CTGTATCATTTGTTAATCCATCTCGTAAGGTCTTTACTATT 3523 |||| ||||||||||| |||||| ||| |||||||||||| |||||||||||||| || Sbjct 3268 GTCTATGTTGTAAATATATCTGTATGATT-GTTAATCCATCTTGTAAGGTCTTTACTGTT 3326 Query 3524 CGTaaaaaaaaa---aTC-CATTCGTCTAACCTGTAGTCGCTTCAAAACACAACTGCATT 3579 || ||||||||| || ||||||| |||||||||||||||||||||| |||||||||| Sbjct 3327 CGGAAAAAAAAATCCATAACATTCGTATAACCTGTAGTCGCTTCAAAACGCAACTGCATT 3386 > Ahg484790 jgi|Araly1|484790|fgenesh2_kg.5__782__AT3G43220.1 Length=2981 Score = 1971 bits (1067), Expect = 0.0 Identities = 2084/2561 (81%), Gaps = 126/2561 (5%) Strand=Plus/Plus Query 639 AAA-TCAGCTATGACCTCATCGCCATCAGTGGA-GAATGGCGGCTCAGGCTCCTCTGGAT 696 ||| ||||||||| | |||||||||| | ||| | |||| || | | ||||||||||| Sbjct 310 AAATTCAGCTATGTCTTCATCGCCATTAACGGACG-ATGGTGGTTTAAGCTCCTCTGGAA 368 Query 697 C-A-TC-TGCTCTTTTA-G--GC-TGTATGCAACAATTCAAGCTCTTCGAGACTCAAGCG 749 | | | | ||| |||| | | | |||||| ||||||| || ||||| |||||| || Sbjct 369 CAACACATTCTC-TTTACGCTTCTTCTATGCAGGAATTCAAACTGTTCGAAACTCAATCG 427 Query 750 AA-TTTCTATATGATTGGTT-GGAACGGTAGTGGAGTATATAGAATACTTAAGATAGACC 807 || ||| || |||||||||| ||| | | |||||||| |||||| |||| ||||| || | Sbjct 428 AACTTT-TACATGATTGGTTGGGATC-GAAGTGGAGTTTATAGAGTACTAAAGATTGATC 485 Query 808 GGCTCGAAGCATCTGAGCTTAATC-TCAGAGAGGATTCGACTGCGTATAC-CAAA-AAAG 864 | || || | ||||||||||| | | || | ||||||||| | | ||| |||| |||| Sbjct 486 GTCTTGATCCGTCTGAGCTTAA-CATTAGTCAAGATTCGACT-CAT-TACACAAAGAAAG 542 Query 865 AATGCTACGAGTTGCTTAAACGGATACACGAAGGAAACAAGGCGACTGGTGGACTGAAAC 924 ||||||| |||||||| ||||||||||| |||||||| ||||| || ||||| ||||||| Sbjct 543 AATGCTATGAGTTGCTCAAACGGATACATGAAGGAAATAAGGCTACGGGTGGGCTGAAAC 602 Query 925 TTGTCACTGTTTGTTATGGAATCATTGGGTTCATTAAGTTTTTGGGACCATATTACATGC 984 |||||||| |||||||||| |||||||| || |||| || |||||||| |||||||||| Sbjct 603 TTGTCACTCTTTGTTATGGTATCATTGGCTTTGTTAAATTCTTGGGACCCTATTACATGC 662 Query 985 TGCTTATAACTGAAAGAAGAGAGATAGGTGAAATTTGTGGTCACATTGTTTACGAAGTGT 1044 |||||||||||||||||||| | ||||||||||||| |||||| | ||| || | || | Sbjct 663 TGCTTATAACTGAAAGAAGACAAATAGGTGAAATTTTTGGTCATAGTGTCTATGCTGTAT 722 Query 1045 CAAAGAGTGATATGA-TTGCATTGCA-ACATTCTAGC-GTGCTTTGCAACACTGCAAATT 1101 ||||||| || || | |||| ||||| | |||||| | | | ||||||| ||| ||| Sbjct 723 CAAAGAGCGAGAT-AGTTGCGTTGCAGA-ATTCTA-CTCTACAGTGCAACATTGCCAATA 779 Query 1102 TAAGAGACGAGAACAGGTACAAGAGACTCCTGTGTATGGTGGACCTTACGAAAGACTTCT 1161 ||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 780 TAAGAGATGAAAACAGATACAAGAGACTCCTCTGTATGGTGGACCTTACGAAAGACTTCT 839 Query 1162 TTTTCAGCTATTCTTACAATATAATGCGAAGTTTCCAGAAGAATATATGCGACCATGAGA 1221 |||||||||||||||||||||||||| |||||| |||||||||| ||||| | | |||| Sbjct 840 TTTTCAGCTATTCTTACAATATAATGAGAAGTTACCAGAAGAATGTATGCAATTACGAGA 899 Query 1222 GTGGAGGTACTCTCTATAAGAAAATGTTTGTGTGGAACGAATTCTTGACTCGGGGAACTC 1281 ||| | ||||||| ||||||||||||| ||||| || |||||||||||||||| || Sbjct 900 CCGGACATGTTCTCTATGAGAAAATGTTTGTCTGGAATGAGTTCTTGACTCGGGGAA-TC 958 Query 1282 -GACATCACCTTCGGAATACCCTGTGGACTGTAGCATTGGTGTATGGGTTT-TTTAAGCA 1339 ||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||| Sbjct 959 CGACATCATCTTCGGAATACCCTGTGGACTGTAGCATTGGTTTATGG-TTTCTTTAAGCA 1017 Query 1340 GACAA-TACTTTCCGAAGCTGGACGGAATTTCAA-ACTCACTCTTATTGCTAGGCGTTCC 1397 | | | ||||| ||| |||| ||| |||| || | |||| |||||||||||||||||| Sbjct 1018 GGCCTCT-CTTTCTGAATCTGGGCGGGATTTTAAGA-TCACCCTTATTGCTAGGCGTTCC 1075 Query 1398 CGCCATAATGCTGGAACCAGGTACTTGAAACGAGGAATAAAC-GAAAGTGGCAATGTTGC 1456 || |||||||||||||||||||||||||| |||||| ||||| || | |||||||||||| Sbjct 1076 CGTCATAATGCTGGAACCAGGTACTTGAAGCGAGGAGTAAACAGATA-TGGCAATGTTGC 1134 Query 1457 TAATGATGTGGAAACAGAACAGATAGTGTCTGAGGATGTTCCAGTAGACCGTCCC-ATGC 1515 ||||| || || || || ||||||||||| || |||||||| | ||||| ||| |||| Sbjct 1135 CAATGACGTCGAGACTGAGCAGATAGTGTCCGAAGATGTTCCTGAAGACCA-CCCTATGC 1193 Query 1516 AAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCTCTATTCTGGTCACAGGAGACCT 1575 || |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 1194 AAGTAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCACTTTTCTGGTCACAAGAGACCT 1253 Query 1576 CACGGA-TGAAAGTTAAGCCTGATATAGTATTGTCAAAAAGGGA-CCTGAACTATGAGGC 1633 |||| | |||| | ||||| |||||||| |||||||||| || || || ||||||||| Sbjct 1254 CACG-ACTGAATCTAAAGCCGGATATAGTCTTGTCAAAAAAAGAACCAGA-CTATGAGGC 1311 Query 1634 AACTAGAGTTCACTTTGAAAATCTTGTGGAGCGTTATGGAGTCCCCATCATTATTCTGAA 1693 |||||| |||||||||| || ||||| || || |||||| ||||||||| |||||||| Sbjct 1312 GACTAGACTTCACTTTGATAACCTTGTAGAACGATATGGAAACCCCATCATCATTCTGAA 1371 Query 1694 CTTGATCAAGACCAACGAGAGGAAACCCAGGGAGTCGATTCTCCGGGCAGAGTTTGCTAA 1753 |||||||||||| || || | || || || ||||| || ||||| | |||||||| ||| Sbjct 1372 CTTGATCAAGACAAAAGAAAAGAGGCCTAGAGAGTCAATCCTCCGAGAAGAGTTTGTTAA 1431 Query 1754 TGCAATTGACTTTATAAACAAAGATCTGCCGGAAGAAAATCGGCTTAGATTCCTCCACTG 1813 |||||||||||| |||||||||||| | || || |||||||| || ||||||||||||| Sbjct 1432 TGCAATTGACTTCATAAACAAAGATTTACCTGAGGAAAATCGTCTGCGATTCCTCCACTG 1491 Query 1814 GGACTTGCACAAACATTTTCACAGCAAAACAGA-AAATGTATTGGCACTTCTTGGAAAAG 1872 |||| |||||||||||||||| || |||||| | |||||| |||||||| ||||| |||| Sbjct 1492 GGACCTGCACAAACATTTTCAGAGAAAAACA-ACAAATGTCTTGGCACTCCTTGGCAAAG 1550 Query 1873 TAGCTGCCTGTGCTTTGATGCTAACAGGTTTCTTTTATTATCAACTTACACCAGCAATGA 1932 ||||||||||||| ||||||||||||| ||| ||||| |||||| | |||||||| |||| Sbjct 1551 TAGCTGCCTGTGCATTGATGCTAACAGATTTGTTTTACTATCAAGTAACACCAGCTATGA 1610 Query 1933 AGCTTGAGGGTTATATGAGCTTGTC-T--TCGTCTGATGCCGACAC-G----T----CTC 1980 || |||||||||| ||||||||||| | || |||||||| ||||| | | ||| Sbjct 1611 AGATTGAGGGTTACATGAGCTTGTCGTCCTCTTCTGATGCTGACACTGGGGATATATCTC 1670 Query 1981 CACATAATAGTTCTGATGATGATAGTAGGGATTATGACTCATTAGAGAAGAATTGCC-GC 2039 |||| | |||||||||||||||| | | | | | | | || |||||||| | || | Sbjct 1671 CACACACTAGTTCTGATGATGAT-G-A----T-A-G-C-C-TT-GAGAAGAAAT-CCAGT 1717 Query 2040 CCAAGTAAGAATGTTGCAAATGGTGATTATGATGTCAAGCCTAGC-AGGCTCCAGAGTGG 2098 ||||||||| |||| ||| | | |||||||||||| | | ||||| |||||||| Sbjct 1718 AGGAGTAAGAATATTGCTTATGAAAAATGTGATGTCAAGCC-ACCCAGGCTTCAGAGTGG 1776 Query 2099 AGTGCTGCGGACCAACTGCATAGATTGCCTTGATCGTACAAATGTTGCCCAATATGCATA 2158 || || ||||||| ||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 1777 CGTTCTTAGGACCAATTGCATTGATTGCCTTGACCGTACAAATGTAGCACAATATGCATA 1836 Query 2159 TGGTTGGGCTGCTCTAGGGCAACAGCTTCATGCT-TTAGGAATTAGAGATGCTCCAACAA 2217 ||||||||||||||| ||||| ||||| |||| | ||||| |||||| ||| |||| | | Sbjct 1837 TGGTTGGGCTGCTCTTGGGCAGCAGCTACATG-TATTAGGGATTAGAAATGTTCCAGCCA 1895 Query 2218 TAGAACTTGATGATCCTTTGTCTAGTACTTTAATGGGGTTATACGAGAGAATGGGAGACA 2277 |||||||||||||||| ||| ||| | | ||||||||||| || ||||||||||| |||| Sbjct 1896 TAGAACTTGATGATCCCTTGGCTATTTCGTTAATGGGGTTGTATGAGAGAATGGGTGACA 1955 Query 2278 CACTAGCTTATCAATATGGTGGATCTGCAGCCCACAATAAGGTTTTTAGTGAAAGGCGAG 2337 |||||||| |||| ||||||||||| ||||||||||| |||||||| || || || ||| Sbjct 1956 CACTAGCTCATCAGTATGGTGGATCCGCAGCCCACAACAAGGTTTTCAGCGAGAGAAGAG 2015 Query 2338 GCCAGTGGAGAGCAGCAACCCAGTCACAAGAGTTCTTGAGGACTCTGCAACGTTATTATA 2397 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||| Sbjct 2016 GCCAGTGGAGAGCAGCAACTCAGTCACAGGAGTTCTTGAGAACTCTGCAACGATATTATA 2075 Query 2398 ATAACGCATATATGGATGCGGATAAACAAGATGCCATTAATATATTTCTTGGTACTTTCC 2457 ||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||| Sbjct 2076 ATAACGCATATATGGATGCAGATAAACAAGACGCCATTAATATATTTCTTGGCACATTCC 2135 Query 2458 GGCCTGAACAAGGGA--GCCAGGCGGTTTGGGAGTTGCGTTCAGATTCCCACTCTAATGG 2515 ||||||||| |||| ||||| | | |||||||| | ||| |||| | ||||||||| Sbjct 2136 AGCCTGAACA-GGGAATGCCAG-CAATCTGGGAGTTACAATCAAATTCTCTCTCTAATGG 2193 Query 2516 ACGAAGTGGAGAGATAAGCATGGGGGAAGATGAAAAGTTTCTTGT-AAAGAGGTGCTTAT 2574 ||||| ||||||||| ||||| | ||||||| | ||||||||| ||| |||||||||| Sbjct 2194 ACGAAATGGAGAGATGAGCATAGCAAAAGATGAGAGGTTTCTTGTGAAA-AGGTGCTTAT 2252 Query 2575 CAGATGGGAA-TATTCTCCATGAAAGTCACACTCCGA-TGTCTGCAATGAGTAGAAA-GA 2631 |||||||| | | ||||||| |||||| || ||| | || | || |||||||| || || Sbjct 2253 CAGATGGGGACT-TTCTCCACGAAAGTTGCATTCC-ACTGCCAGCCATGAGTAGCAATGA 2310 Query 2632 ATGAAAGCATATCACATAGAGGTTT-TGTGT-CG-TCACACCAAGTGACTCGTACTCATA 2688 ||||||||| |||| | |||||| | || | | ||| || |||| | | |||| Sbjct 2311 -TGAAAGCATGCCACAGAAAGGTTTCTCCGTACCATTACAGCATGTGA---G--C-CATA 2363 Query 2689 TAATTTCAGAATCATCACCAGATATGCCAGCTGCCGGTGATGTAACATTATCGAGGTGTA 2748 | ||||||| |||||| | ||||| |||| | | ||||||| ||||||| ||||||| Sbjct 2364 TTCTTTCAGAGTCATCATCTGATATACCAGTTTCTAATGATGTAGCATTATCAAGGTGTA 2423 Query 2749 CTCCGTCAATGCCTAGCACACAtttttttGGAGATGTCCAAAAAGTTCAACATAATGGTA 2808 |||| ||||||||| | | ||| | || |||||||| ||||| ||||| | | ||||| Sbjct 2424 CTCCTTCAATGCCTCGGAAACAGCTCTTCGGAGATGTGCAAAAGGTTCATCGTTTTGGTA 2483 Query 2809 GTAGCTCCA-TTTACTT-G-TCCGAGCAAGAAGATATGTCTAGTGTCTCAAATTTCGTTG 2865 | | || | ||||||| | | | | | ||||| |||||||||||||| ||||| |||| Sbjct 2484 GC-GATCAAGTTTACTTTGGTGGG-G-AGGAAGACATGTCTAGTGTCTCCAATTTTGTTG 2540 Query 2866 ATATTGAGTGGCTTTCGTCGTCAGAAAATCTATGTGAGAACGATC-ACTTGTCCAGGCCG 2924 || |||||||||||| || |||||||||| ||| ||||| | || | ||| | ||| || Sbjct 2541 ATGTTGAGTGGCTTTTATCATCAGAAAATCCATGCGAGAATGCTCTATTTGAC-AGGTCG 2599 Query 2925 TCAGCGCTTACAATATATTCAACCGCAGA-GACGTCTTCATCAGAGAATATCATCACTGA 2983 || |||||||||| | ||| || || || |||||||||| ||||||||| | ||| || Sbjct 2600 TCGGCGCTTACAAAAAATTTGACAGC-GAAGACGTCTTCAACAGAGAATAGCGTCAATGG 2658 Query 2984 AGTAAAACAATTGACGCCAGCTATGAGAGAGAGTGGATCAAGCAGCAGGAAGGGAAAAGA 3043 |||| ||||| | | ||| ||| || || ||||| ||||||||||| |||||||| | Sbjct 2659 AGTAGGACAATCGGCACCAACTACAAGTGAAAGTGGGTCAAGCAGCAGTAAGGGAAA-G- 2716 Query 3044 ACCAGTGGAAACCGAACTGTCTGTACACACAAAGATTCGCGATGA-TTTCCCAGATAGCT 3102 | || |||| || | | ||| || |||||| ||||| ||||| |||||||| Sbjct 2717 ----G---AA-CCGA--TGG--G-A-ACA-AA-GATTCGGGATGACTTTCC-AGATAGCT 2759 Query 3103 TCAAACAATGGGTAGCATACGGGGAAGCACTCTGCCATTGA 3143 ||||| |||||||||||||||| |||||||||||||| ||| Sbjct 2760 TCAAAGAATGGGTAGCATACGGTGAAGCACTCTGCCACTGA 2800 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 138948199023 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5