BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20900.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488996 jgi|Araly1|488996|fgenesh2_kg.6__2130__AT5G20900.1 1465 0.0
Ahg946710 jgi|Araly1|946710|scaffold_702939.1 182 6e-45
> Ahg488996 jgi|Araly1|488996|fgenesh2_kg.6__2130__AT5G20900.1
Length=1054
Score = 1465 bits (793), Expect = 0.0
Identities = 996/1087 (92%), Gaps = 42/1087 (4%)
Strand=Plus/Plus
Query 4 AAAAATCAATATCTATCGCCAGGTGTCAAATTACAGGAGCTTCTGAGAAGGATAAATCTC 63
||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 AAAAATCAATATCAATCGCCACGTGTCAAGTTACAGGAGCTTCTGAGGAGGATAAATCTC 60
Query 64 GGAGGTTCCCGGTCTGAACGACGTAGAGACGAAGCGAAACAAAAGTACTCTAAGGGAGAG 123
|||||||||||||||||||||||| |||||||||||||||||||| | || || | |
Sbjct 61 GGAGGTTCCCGGTCTGAACGACGTGGAGACGAAGCGAAACAAAAGCATTC---GGCAAA- 116
Query 124 AAGTATCAAAATTCTCATCGGAAAAAGACAGATCTACAAATTTTGAGAGACAAGCCATGA 183
||| | || | | || | | || | | | || |||||||||| |||||
Sbjct 117 AAG-A-CAGA-T-CT-A-C--AA-----C---T-T-----TT--GAGAGACAAGTCATGA 152
Query 184 CTAAGGTGAAAGATGAGCCACGCGCTTCCGTTGAAGGTGGATGTGGTGTTGCCGACGGTG 243
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 153 ATAAGGTGAAAGACGAGCCACGCGCTTCCGTAGAAGGTGGATGTGGTGTTGCCGACGGTG 212
Query 244 ACGGCGGCGCGGCTGAGATCGGCGGTACCGGATCTGTTGAGAAATCGATTAACGAAGTTA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 ACGGCGGCGCGGCTGAGATCGGCGGTACCGGATCTGTTGAGAAATCGATTAACGAAGTTA 272
Query 304 GGTCCACGGAGATTCAAACCGCTGAGCCAACGGTTCCTCCAAATCAACTTACTATTTTCT 363
||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 273 GGTCCACGGAGATCCAAACTTCTGAGCCAACGGTTCTTCCAAGTCAACTTACTATTTTCT 332
Query 364 TTGGTGGAAGTGTTACTGTGTTTGATGGACTTCCATCAGAAAAGGTTCAAGAAATCCTTC 423
||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
Sbjct 333 TTGGTGGGAGTGTTACTGTGTTTGATGGACTTCCAGCAGAAAAGGTACAAGATATCCTCC 392
Query 424 GTATTGCTGCTAAAGCAATGGAGACAAAGAATTCTACAAGCATCAGTCCTGTCTCAT-CG 482
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 393 GTATTGCTGCTAAAGCAATGGAGACTAAGAATTCTACAAGCATCAGTCCTGTC-CATTCG 451
Query 483 CCAGCACTGAACAGAGCTCCTTCTTTCTCAAGCACATCTAATGTGGCATCACCAGCTGCA 542
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 452 CCAGCACTGAACAGAGCTCCTTCTTTCTCAAGCACATCTAATGTCGCTTCACCAGCTGCA 511
Query 543 CAGCCATTTCCTATTCAGCCAATCTCGTTTTGCAGATCCACGGCTGATCTACCTATTGCA 602
|||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 512 CAGCCATTTCCTATTCAGCCGATTTCGTTTTGCAGATCCGCGGCTGATCTACCTATTGCA 571
Query 603 AGGAGGCATTCGCTTCAACGATTCCTCGAGAAAAGACGGGACAGATTGGTCAACAAAAAC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AGGAGGCATTCGCTTCAACGATTCCTCGAGAAAAGACGGGACAGATTGGTCAACAAAAAC 631
Query 663 CCTTACCCTACTTCAGACTTCAAAAAGACAGATGTCCCAACAGGCAATGTCTCTATCAAG 722
|||||||||||||| ||| ||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 632 CCTTACCCTACTTCTGACATCAAAAAGACAGATGTCTCAACAGGAAATGTTTCTATCAAG 691
Query 723 GAGGAATTTCCAACTGCTTAGCAGAAGATCAAACCTC----C-ACATTAAGCTTATAAGC 777
||||||||||| ||||||||||||||||||||||||| | ||| ||||||| | ||
Sbjct 692 GAGGAATTTCCGACTGCTTAGCAGAAGATCAAACCTCAAGGCTACAATAAGCTTTTGAGT 751
Query 778 AAACTAAGTAAAACGTTTTGTCAATATAGTAATTAATATGATAATCTATCATGTACGCTG 837
||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||
Sbjct 752 AAACTAAGTAAAACGTTATGTCAATATGGT--T-AATATGATAATCTATCATGTACGCTG 808
Query 838 CTGTGTGTAATGTGTTGTATGATAGTGTCTGTATAGGTTTGCTAGACAAACCGAAGATTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CTGTGTGTAATGTGTTGTATGATAGTGTCTGTATAGGTTTGCTAGACAAACCGAAGATTG 868
Query 898 TTTCCATGTCTGGGAGTGGTCAGATATGTTTGCCATTTTACAATTCTACTGAAGAAACTA 957
||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 869 TTTCCTTGTCTGG-AGTGGTCAGATATGTTTGTCATTTTACAAGTCTACTGAAGAAACTA 927
Query 958 TTGTAGTT--AGTAACACTGTCCTAGAGTCTATCTAACTAATGACTCTTTGATGTTATGT 1015
|||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TTGTAGTTTTAGTACCAGTGTCCTAGAGTCTATCTAACTAATGACTCTTTGATGTTATGT 987
Query 1016 TATTGAACTTGTCATCTCTTCAAGATACAAT-TGTGTGTAAAGTAAAGAAGTCTGTGTTG 1074
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 988 TATTGAACTTGTTATCTCTTCAAGATACAATGTGTGTGTAAAGTAAAGAAGTCTGTGTTG 1047
Query 1075 TTATTAT 1081
|| ||||
Sbjct 1048 TTGTTAT 1054
> Ahg946710 jgi|Araly1|946710|scaffold_702939.1
Length=859
Score = 182 bits (98), Expect = 6e-45
Identities = 122/134 (91%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 160 CAAATTTTGAGAGACAAGCCATGACTAAGGTGAAAGATGAGCCACGCGCTTCCGTTGAAG 219
||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1 CAAGTTTTGAGAGACAAACCATGACTAAGGTTAAAGACGAGCCACGCGCTTCCGTAGAAG 60
Query 220 GTGGATGTGGTGTTGCCGACGGTGACGGCGGCGCGGCTGAGATCGGCGGTACCGGATCTG 279
||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 61 ATGGATGTGGTGTTGCCGACGGTGACGGCGGCGCAGCTGAGATCGGCAGAACCGGATCTG 120
Query 280 TTGAGAAATCGATT 293
||| |||| ||||
Sbjct 121 CTGATAAATTGATT 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5