BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20920.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489000 jgi|Araly1|489000|fgenesh2_kg.6__2134__AT5G20920.1 1821 0.0
Ahg340977 jgi|Araly1|340977|fgenesh1_pg.C_scaffold_3000740 300 2e-80
> Ahg489000 jgi|Araly1|489000|fgenesh2_kg.6__2134__AT5G20920.1
Length=1190
Score = 1821 bits (986), Expect = 0.0
Identities = 1136/1203 (94%), Gaps = 32/1203 (3%)
Strand=Plus/Plus
Query 1 TATCTCAGATTAAAACAACCCCTGCGCCGCTTACTCTCTCTCAGATTCCTCCCGAAGCAA 60
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 TATCTCAGATTAAAACAAGCCCTGCGCCGCTTA--CTCTCGCAGATTCCTCCCGAAGCAA 58
Query 61 CC-TCGTTTACTCTCTACGCCAAT-TTCAGCGCTTAGACATCCCTTTTTGCAATCATGGC 118
|| | ||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 59 CCTTTGTTAACTCTCTACGCCAATCTT-AGCGCTTAGACATTCCTTTTTGCAATCATGGC 117
Query 119 TGATGAAATCAATGAGATAAGGGAAGAGCAAGAACAGCTCGCACCCTTTGATCCTTCCaa 178
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 TGATGAAAACAATGAGATAAGGGAAGAGCAAGAACAGCTCGCACCCTTTGATCCATCCAA 177
Query 179 gaagaaaaagaagaagaagGTTGTGATTCAGGAACCTGTCGAGGACTTAGCAGAGTCTTC 238
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 178 GAAGAAAAAGAAGAAGAAGGTTGTCATTCAGGAACCTGTTGAGGACTTAGCAGAGTCGTC 237
Query 239 ACAGACT-GAGAAATCTGATTCATTGCCTGTTAATGATGGTCTTGAGAGTTCATTTACTG 297
||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 ACAGA-TAGAGAAAACTGATTCATTACCTGTTAATGATGGTCTTGAGAGTTCATTTACTG 296
Query 298 GAATGAAGAAAAAGAAGAAGAAGCCAACTGAATCAAGCT-TATTGAACAACGAAAGTGTT 356
|||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 297 GAATGAAGAAAAAGAAGAAGAAGCCAGCTGAATCAAG-TGCATTGAACAACGAAAGTGTT 355
Query 357 GATGCTGGGGAAGATTTGGATGAGATTGCTAATGACGAGCAAGAGGGGGAAGAAGGAATA 416
|||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 356 GATGCTGGTGAAGATTTGGATGAGCTTGCTAATGACGAGGAAGAGGGGGAAGAAGGAAAA 415
Query 417 GTTCTACAGCAACGTTACCCCTGGGAGGGAAGTGAGAGGGATTACATATATGACGAGCTT 476
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 416 GTTCTACAGCAACGTTACCCCTGGGAGGGCAGTGAGAGGGATTACATATATGACGAGCTT 475
Query 477 CTTGGTAGAGTCTTTAACATTCTCCGTGAAAATAATCCGGAGCTTGCTGGAGATAGGCGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTTGGTAGAGTCTTTAACATTCTCCGTGAAAATAATCCGGAGCTTGCTGGAGATAGGCGT 535
Query 537 CGTACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGGACAAAGAAGACTGTCTTTGTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CGTACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGGACAAAGAAGACTGTCTTTGTC 595
Query 597 AACTTCATGGACCTTTGCAAGACGATGCATCGTCAACCAGATCATGTTATGCAATACTTG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AACTTCATGGACCTTTGCAAGACGATGCATCGTCAACCAGATCATGTTATGCAATACTTG 655
Query 657 CTTGCTGAGTTGGGTACTAGTGGTTCGCTTGATGGGCAGCAAAGGTTGGTTGTTAAGGGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTTGCTGAGTTGGGTACTAGTGGTTCGCTTGATGGGCAGCAAAGGTTGGTTGTTAAGGGA 715
Query 717 AGGTTTGCACCTAAGAATTTTGAAGGAATTTTGCGGCGATATATCACTGACTACGTCATT 776
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 716 AGGTTTGCACCTAAGAATTTTGAAGGAATTTTGCGACGGTATATCACTGACTACGTCATT 775
Query 777 TGCCTTGGTTGCAAGAGCCCAGACACCATTCTCTCCAAGGAGAACCGTCTCTTCTTTCTG 836
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 776 TGCCTTGGTTGCAAGAGCCCAGACACAATTCTCTCGAAGGAGAACCGTCTCTTCTTTCTG 835
Query 837 AGATGTGAAAAGTGTGGATCTCAACGATCTGTGGCTCCGATCAAAACAGGGTTTGTTGCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGATGTGAAAAGTGTGGATCTCAACGATCTGTGGCTCCGATCAAAACAGGGTTTGTTGCT 895
Query 897 CGTGTTAGTCGCAGGAAGACTTGAGAAATTAGAAGGTGAAGTGACCTTGGTATGGAGTTT 956
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 896 CGTGTTAGTCGCAGGAAGACTTGAGAAATTAGAAGGTGAAGTGAGCTTGTTATGGAGTC- 954
Query 957 GGAGCTAT--T-CT-----ACTGCTTCTGTATGAGTTTATGAGTTGAAGAAATACTTGTC 1008
|||||||| | || ||||||||||||||||||||||||||||| | ||||||||
Sbjct 955 GGAGCTATGCTTCTCTTCTACTGCTTCTGTATGAGTTTATGAGTTGAA-A--TACTTGTC 1011
Query 1009 TTGttttttttatt----ttgttttGGAATATGATTATGACTTGACTTTTAAAA-TGGGA 1063
||||||||||| || |||||| ||||||| | ||||||||||||| |||| |||||
Sbjct 1012 TTGTTTTTTTT-TTGAAGTTGTTTGGGAATAT--T-ATGACTTGACTTTAAAAAATGGGA 1067
Query 1064 TAGGATCAAAACCTTTTACTCTGTCAGGTTCATGTGGTCACCTTGAAGGTTGATTTAGTA 1123
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 1068 TAGGATCAAAACCTTTTACTCTGTCAGGTTCATTTGGTCAACTTGAAGGTCGATTTAGTA 1127
Query 1124 AATCCATGGACTTCTTTTTTGTGTTAAG-ATT-ATTCTTAGTTCAAAATTAATAGACTAA 1181
|||||||||||||| ||||||||| ||| | | |||||||||| ||||||||||||||||
Sbjct 1128 AATCCATGGACTTCATTTTTGTGTCAAGTAATCATTCTTAGTTAAAAATTAATAGACTAA 1187
Query 1182 TGA 1184
|||
Sbjct 1188 TGA 1190
> Ahg340977 jgi|Araly1|340977|fgenesh1_pg.C_scaffold_3000740
Length=519
Score = 300 bits (162), Expect = 2e-80
Identities = 336/416 (81%), Gaps = 28/416 (7%)
Strand=Plus/Plus
Query 475 TTCTTGGTAGAGTCTTTAACATTCTCCGTGAAAATAATCCGGAGCTTGCTGGAGATAGGC 534
||||| |||| |||||||| || || |||||||||| ||||||||||| ||||| | |||
Sbjct 53 TTCTTCGTAGGGTCTTTAATATCCTGCGTGAAAATAGTCCGGAGCTTGTTGGAGTTTGGC 112
Query 535 GTCGTACAGTTATGA-GGCCTCCTCAAGTTCTTCGTG-A-GG---G-GAC----A-A-AG 581
|| |||| |||| | |||| || ||||||||||||| | || | ||| | | ||
Sbjct 113 TTCTTACAATTAT-ATGGCCACCACAAGTTCTTCGTGAAGGGACAGAGACAGGGACACAG 171
Query 582 AAGACTGTCTTTGTCAACTTCATGGACCT-TTGCAAGACGATGCATCGTCAACCAGATCA 640
||||| |||||||||||||| ||||| || ||||||||| |||| ||| | ||||||||
Sbjct 172 AAGACAGTCTTTGTCAACTTTATGGA-CTATTGCAAGACCATGCGTCGACCCCCAGATCA 230
Query 641 TGTTAT-GCAATACTTGCTTGCTGAGTTGGGTACTAGTGGTTCGCTTGATGGGCAGCAAA 699
|||||| || || |||||||| |||| |||||||||| ||| | ||||||||||||||||
Sbjct 231 TGTTATGGCTAT-CTTGCTTGGTGAGATGGGTACTAGGGGTACACTTGATGGGCAGCAAA 289
Query 700 GGTTGGTTGTTAAGGGAAGGTTTGCACCTAAGAATTTTGAAG-GAATT-TTGCGGCGATA 757
|||||||||||| ||| || || ||| ||| | |||||| | || || || |||||
Sbjct 290 GGTTGGTTGTTAGGGGGAGATTCACACAGAAGCACTTTGAATCG--TTATTACGACGATA 347
Query 758 TATCACT-GACTACGTCATTTGC-CTTGGTTGCAAGAGCCCAGACACCATTCTCTCCAAG 815
|||| || ||||||||||| ||| || |||||||||||| ||||| | ||| | || |||
Sbjct 348 TATC-CTTGACTACGTCATGTGCTCT-GGTTGCAAGAGCACAGACGCAATTATTTC-AAG 404
Query 816 G-AGAACCGTCTCTTCTTTCTGAGATGTGAAAAGTGTGGATCTCAACGATCTGTGG 870
| |||| ||||||| |||| |||||||||||||||||||||| ||||| | ||||
Sbjct 405 GGAGAATCGTCTCTCCTTTTTGAGATGTGAAAAGTGTGGATCAGAACGACCAGTGG 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5