BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G21105.1 Length=2239 Score E Sequences producing significant alignments: (Bits) Value Ahg489021 jgi|Araly1|489021|fgenesh2_kg.6__2155__AT5G21105.1 2710 0.0 > Ahg489021 jgi|Araly1|489021|fgenesh2_kg.6__2155__AT5G21105.1 Length=1930 Score = 2710 bits (1467), Expect = 0.0 Identities = 1718/1836 (94%), Gaps = 30/1836 (2%) Strand=Plus/Plus Query 89 ATGGGTGTGTGGTGGATAGTGCTGGTGGTGGCTGTCTTGACTCACACGGCGTCTGCCGCC 148 |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGGTTGTGTGGTGGATA--G-TGGTGGTGGCTGTCTTGACTCACACGGCGTCTGCCACC 57 Query 149 GTGAGAGAATATCATTGGGAGGTGGAGTACAAGTATTGGTC-GCCGGACTGCAAAGAGGG 207 |||||||| ||| |||||||||| |||||||||| |||| | ||||||||||||||| || Sbjct 58 GTGAGAGAGTATGATTGGGAGGTTGAGTACAAGTTTTGG-CAGCCGGACTGCAAAGAAGG 116 Query 208 CGCCGTTATGACCGTCAACGGCGAGTTTCCTGGTCCCACCATAAAAGCCTTCGCCGGAGA 267 ||||| |||||| |||||||| |||||||||| ||||||||||||||| |||||||||| Sbjct 117 TGCCGTCATGACCATCAACGGCCAGTTTCCTGGCCCCACCATAAAAGCCGTCGCCGGAGA 176 Query 268 CACCATCGTCG-TCAATCTCACCAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGC 326 ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 177 CACCATCGTCGTTC-ATCTCACGAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGC 235 Query 327 ATGGAATCCGTCAGTTCGGAAGTCCATGGGCAGATGGAGCAGCAGGAGTTACTCAATGCG 386 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 236 ATGGAATCCGTCAGTTGGGAAGTCCATGGGCAGATGGAGCAGCAGGAGTTACCCAATGTG 295 Query 387 CAATTAACCCTGGAGAGACTTTTACCTACAATTTCACTGTTGAAAAGCCGGGAACACATT 446 | ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct 296 CCATTAATCCTGGAGAGACGTTTACCTACAAATTCACTGTTGAGAAGCCGGGAACACATT 355 Query 447 TCTACCATGGACACTATGGCATGCAGAGATCAGCTGGGCTATACGGATCGTTGATTGTGG 506 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TCTACCATGGACACTACGGCATGCAGAGATCAGCTGGGCTATACGGATCGTTGATTGTGG 415 Query 507 ACGTGGCTAAAGGAAAGAGCGAGAGATTGAGATACGATGGTGAGTTTAATCTCTTACTCA 566 |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 416 ACGTGGCTAAAGGACAGAGAGAGAGGTTGAGATACGATGGTGAGTTTAATCTCTTACTAA 475 Query 567 GTGACTGGTGGCATGAGGCTATTCCCTCCCAAGAACTCGGTCTTTCTTCCAAACCTATGC 626 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 476 GTGACTGGTGGCATGAGCCTATTCCTTCCCAAGAACTCGGTCTTTCTTCCAAACCTATGC 535 Query 627 GCTGGATCGGTGAAGCTCAGAGCATATTGATAAATGGGAGGGGACAATTCAATTGTTCAT 686 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 536 GCTGGATCGGTGAAGCTCAGAGCATATTGATAAATGGAAGGGGACAATTCAATTGTTCAT 595 Query 687 TAGCGGCGCAATTTAGCAACAACACATCATTACCAATGTGCACGTTTAAAGAAGGTGATC 746 | ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 596 TGGCGGCGCAATTTAGCAACA-CA--TCATTACCAATGTGCACGTTTAAAGAAGGTGATC 652 Query 747 AGTGCGCCCCACAGATACTCCACGTGGAGCCGAACAAGACTTACCGAATCAGACTCTCCA 806 |||| || ||||||| |||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 653 AGTGTGCACCACAGAAACTCAACGTGGAGCCTAACAAGACTTACCGAATCAGACTCGCCA 712 Query 807 GCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGGGACACAAGCTAGTGGTGGTCG 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 713 GCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGGGACACAAGCTAGTGGTGGTAG 772 Query 867 AAGCCGACGGCAACTACATAACGCCGTTCA-CGACCGACGATATCGACATATACTCCGGC 925 ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| Sbjct 773 AAGCCGACGGCAACTACATTACGCCGTTCATC-ACCGACGATATCGACATATACTCCGGC 831 Query 926 GAAAGCTACTCCGTCCTTCTCACCACCGATCAAGACCCTTCACAAAACTATTACATCTCC 985 || ||||| || || ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 832 GAGAGCTATTCTGTTCTTCTCACCACCGATCAAGACCCATCACAAAACTACTACATCTCC 891 Query 986 GTCGGCGTCCGTGGCCGGAAACCAAACACAACTCAGGCACTCACTATAT-TAAATTACGT 1044 |||||||||||||| ||||||||||||||||| || |||||| | || | |||||||||| Sbjct 892 GTCGGCGTCCGTGGTCGGAAACCAAACACAACACAAGCACTCTCCAT-TCTAAATTACGT 950 Query 1045 AACTGCCCCTGCTTCAAAACTCCCTTCTTCTCCTCCACCGGTGACTCCACGGTGGGACGA 1104 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 951 AACTGCCCCTGCTTCAAAACTCCCTTCTTCTCCTCCGCCGGTGACTCCACGGTGGGACGA 1010 Query 1105 TTTCGAACGAAGCAAAAATTTCTCTAAGAAGATCTTCTCAGCGATGGGATCACCATCGCC 1164 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1011 TTTCGAACGAAGCAAAAATTTCTCCAAGAAGATCTTCTCAGCGATGGGATCTCCATCGCC 1070 Query 1165 GCCGAAGAAATACAGAAAACGGTTGATTCTTCTCAACACACAGAATCTAATCGACGGATA 1224 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1071 GCCGAAGAAATACAGAAAACGGTTGATTCTTCTCAACACTCAGAATCTAATCGACGGATA 1130 Query 1225 CACGAAATGGGCGATCAACAACGTCTCTCTAGTGACTCCGGCAACGCCGTATCTCGGTTC 1284 |||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1131 CACGAAATGGGCTATTAACAATGTCTCTCTAGTGACTCCGGCAACGCCATATCTCGGTTC 1190 Query 1285 GGTTAAATACAACTTGAAACTCGGATTTAACCGGAAATCGCCGCCGAGGAGTTACCGTAT 1344 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1191 GGTTAAATACAATTTGAAACTCGGGTTTAACCGGAAATCGCCGCCGAGGAGTTACCGTAT 1250 Query 1345 GGATTACGATATTATGAATCCACCGCCGTTTCCTAACACCACTACAGGAAACGGAATATA 1404 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1251 GGATTACGACATTATGAATCCACCGCCGTTTCCTAACACCACTACAGGAAACGGGATTTA 1310 Query 1405 CGTTTTCCCGTTTAATGTAACGGTCGACGTGATTATCCAAAACGCTAACGTTTTAAAAGG 1464 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1311 CGTTTTCCCGTTTAATGTAACGGTCGACGTGATTATCCAAAACGCAAACGTTTTAAAAGG 1370 Query 1465 TATTGTTAGTGAGATTCATCCATGGCATCTTCACGGTCACGATTTCTGGGTTTTGGGTTA 1524 | | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1371 TGTAGTCAGTGAGATTCATCCATGGCATCTTCACGGTCACGACTTCTGGGTTTTGGGTTA 1430 Query 1525 CGGTGACGGGAAATTTAAACCGGGAATTGATGAGAAGACGTATAATTTGAAGAATCCGCC 1584 |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1431 CGGTGATGGAAAATTTAAACCGGGAATTGATGAGAAGACGTATAATTTGAAGAACCCGCC 1490 Query 1585 GTTACGGAATACGGCGATTTTGTATCCGTATGGATGGACGGCGATAAGGTTTGTGACGGA 1644 |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1491 ATTACGGAATACGGCGATTTTGTATCCGTATGGATGGACGGCGTTAAGGTTTGTAACGGA 1550 Query 1645 TAATCCAGGGGTTTGGTTTTTTCATTGTCACATTGAACCGCATTTGCATATGGGAATGGG 1704 ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 1551 TAATCCAGGGGTTTGGTTTTTTCATTGCCATATTGAACCGCATTTGCATATGGGTATGGG 1610 Query 1705 TGTGGTTTTCGCGGAGGGATTAAACCGTATTGGTAAGGTACCTGATGAGGCGTTGGGTTG 1764 ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| Sbjct 1611 TGTGGTTTTCGCGGAGGGATTGAACCGGATTGGTAAGATACCTGATGAGGCGTTGGGTTG 1670 Query 1765 TGGTTTAACCAAGCAATTTCTCATGAACCGGAACCGCAATTGATTTAGTAAGGTATGACG 1824 |||||||||||||||||| |||||||||||||||| | | ||| | | | |||| Sbjct 1671 TGGTTTAACCAAGCAATTCCTCATGAACCGGAACC--A-TA-ATT-A--A---T--GACG 1718 Query 1825 GCATTTGAGTGTG--CTTTTTTGTTTTGTGGTTGTGTTCGGTATGTTGTCAACCGAAGAT 1882 ||||||||||||| ||||| ||||||| | |||||||| |||| |||| |||||||||| Sbjct 1719 GCATTTGAGTGTGTGCTTTTCTGTTTTG-G-TTGTGTTCCGTATATTGTAAACCGAAGAT 1776 Query 1883 TGGTTCATGTTATTGGTATAGTTGGTTAGTTGGTTA 1918 |||||||||||||||||||||||||| ||| ||||| Sbjct 1777 TGGTTCATGTTATTGGTATAGTTGGTAAGTCGGTTA 1812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84293712185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5