BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G21170.2 Length=1271 Score E Sequences producing significant alignments: (Bits) Value Ahg489028 jgi|Araly1|489028|fgenesh2_kg.6__2162__AT5G21170.2 1801 0.0 > Ahg489028 jgi|Araly1|489028|fgenesh2_kg.6__2162__AT5G21170.2 Length=1244 Score = 1801 bits (975), Expect = 0.0 Identities = 1184/1277 (93%), Gaps = 46/1277 (4%) Strand=Plus/Plus Query 1 AtctctctcctctctttgtctctctcGCTTCTGTGATTTGGGC-TTTT-TCAGATGGGAA 58 |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| Sbjct 1 ATCTCTCTCCTCTCTTTGTCTCTCTCACTTCTGTGATTTGGGCTTTTTCTCAGATGGGAA 60 Query 59 ATGCGAACGGCAAAGACGAAGACGCCGCCGCCGGTAGCGGTGGTGCAGATGTTACCTCGT 118 |||||||||||||||| || ||||| ||||| || | || | ||||||||| | Sbjct 61 ATGCGAACGGCAAAGAAGACGACGCTACCGCC----GCCG-CCAGC-GGTGTTACCTCAT 114 Query 119 CCTCGGCGAGATCTAATGGCGGCGATCCTTCTGCACGCAGTCGTCACCGTCGTCCTTCTT 178 | ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 115 CTTCGGCGAGATCCAACGGCGGCGATCCTTCTGCACGCAGTCGTCATCGTCGTCCTTCTT 174 Query 179 CAGACTCTATGAGCAGTTCTCCTCCCGGAAGTCCTGCTCGATCTCCATCTCCTTTCTTAT 238 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 175 CAGATTCTATGAGCAGTTCTCCTCCCGGAAGTCCCGCTCGATCTCCATCTCCTTTCTTAT 234 Query 239 TCGCTCCTCAGCCCACATTGTTATTCCACGTTACATCTTACAACATTTGCTCACCTATGC 298 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 235 TCGCTCCTCAGCCCACATTGTTATTCCACCTTACATCTTACAACATTTGCTCACCTATGC 294 Query 299 GTCACCTCTTCCATTGTTTAGGCTTAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 358 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 295 GTCACCTCTTCCATTGTTTAGGCATAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 354 Query 359 TGGTTCCCGTGGCTCCATTGCAGAGAGCAAACGCCCCTCC-T--CCTAATAACATCCAAT 415 ||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||| Sbjct 355 TGGTTCCTGTGGCTCCATTGCAGAGAGCTAACGCCCCTCCTTCACCTAATAACATCCAAT 414 Query 416 GGAACCAATCACAGAGAGTTTTTGATAATCCCCCAGAGCAAGGAATCCCTACCATCATTA 475 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 415 GGAACCAATCACAGAGAGTTTTTGATAATCCACCAGAGCAAGGAATCCCTACTATCATTA 474 Query 476 CATGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCATGGGACAATTGGAGATCAA 535 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 475 CTTGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCCTGGGACAATTGGAGATCAA 534 Query 536 GGAAGAAGCTGCAGAAATCAGGG-AAAGACCACTCGATTCTCTTTGTCCTTCCATCTGGC 594 ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct 535 GGAAGAAGCTGCAGAAATC-GGGAAAAGACCACTCAATTCTCTTTGTCCTTCCATCTGGC 593 Query 595 ATATACCACTACAAGGTGATTGTGGACGGTGAATCCAAATACATCCCAGATTTACCCTTT 654 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 594 ATATACCACTACAAGGTGATTGTCGACGGTGAATCCAAATACATTCCAGATTTACCATTT 653 Query 655 GTAGCAGACGAAGTTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 714 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GTATCAGACGAAATTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 713 Query 715 AACCCAGAAAGCATAGTGGAGTTTGAGGCGCCACCATCACCTGATCATAGCTACGGTCAA 774 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 714 AACCCAGAAAGCATAGTGGAGTTTGAAGCGCCACCGTCACCTGATCATAGCTACGGTCAA 773 Query 775 ACCCTACCAGCCGCAGAAGATTACGCGAAAGAGCCACTGGCGGTGCCACCTCAGCTTCAT 834 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 774 ACCCTACCAGCCGCAGAAGATTACGCAAAAGAGCCACTTGCGGTGCCACCTCAGCTTCAT 833 Query 835 CTAACACTTCTTGGCA-CTACTGAAGAGACAGCCATAGCCACAAAGCCTCAACATGTGGT 893 |||||||||||||||| | || ||||| | |||| ||||||||||||||||||||||||| Sbjct 834 CTAACACTTCTTGGCAGC-ACGGAAGAAAGAGCCGTAGCCACAAAGCCTCAACATGTGGT 892 Query 894 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 952 Query 954 AACCCACAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1013 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 AACCCAGAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1012 Query 1014 ACCCTAAAAATTCAGTGCCACATTGttctctctctttctttctttttcatctctcAATTA 1073 ||||||||||||||||||||||||||||| | | | | | ||||| ||||| Sbjct 1013 ACCCTAAAAATTCAGTGCCACATTGTTCT-T-T-T--CAT--------ATCTC--AATTA 1057 Query 1074 TGTGAAAACATGTT-CTTTGTTCATAGTGACTAGTGAGTGCCCAACATTTGAGTTTATTA 1132 ||||||| | | || ||||||||||||||| ||| ||||||||| |||||||||| Sbjct 1058 TGTGAAACC-T-TTACTTTGTTCATAGTGA---GTG----CCCAACATT-GAGTTTATTA 1107 Query 1133 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGTAACGATTG 1192 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1108 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGCAACGATTG 1167 Query 1193 TTGT-TT-TAT-TTTC-TGCAAAAACTGTAAAATACATTCGCTAATAATGG-CTATAACA 1247 | | || ||| |||| |||||||||||| |||||||||| |||||||||| |||||||| Sbjct 1168 TACTCTTATATATTTCCTGCAAAAACTGTGAAATACATTCTCTAATAATGGGCTATAACA 1227 Query 1248 AGCTTATCTGCTAGCAA 1264 ||||||||||||||||| Sbjct 1228 AGCTTATCTGCTAGCAA 1244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47501154582 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5