BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G21430.1 Length=946 Score E Sequences producing significant alignments: (Bits) Value Ahg941682 jgi|Araly1|941682|scaffold_602226.1 1020 0.0 > Ahg941682 jgi|Araly1|941682|scaffold_602226.1 Length=697 Score = 1020 bits (552), Expect = 0.0 Identities = 646/693 (93%), Gaps = 0/693 (0%) Strand=Plus/Plus Query 51 TGTGTAAACCTTGGAGCTATGGCTTCCTTATCGACGATAACTCAACCATCTTTAGTCCAC 110 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 3 TGTGTGAACCTTGGAGCTATGGCTTCCTTATCGACGATAACTCAACCGTCTTTAGTGCAC 62 Query 111 ATTCCCGGTGAATCAGTCCTCCATCACGTACCAAGCACGTGCTCTTTCCCATGGAAGCCA 170 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 63 ATTCCCGGCGAATCCGTCCTCCATCACGTACCAAGCACGTGCTCTTTCCCGTGGAAACCA 122 Query 171 ACTATCAACACGAAGCGGATTATCTGTTCGCCGGCTAGGAACTCCAGCGAAGTATCGGCG 230 ||||||| |||||||||||||||||||||||| ||||||||||| | || || ||||| Sbjct 123 ACTATCACCACGAAGCGGATTATCTGTTCGCCTGCTAGGAACTCTGGTGAGGTTTCGGCA 182 Query 231 GAGGCAGAAACCGAAGGTGGATCTAGCACCGCCGTTGATGAAGCACCGAAAGAGTCTCCA 290 || ||||||||||||| ||||||||||||||| || ||||||||||||||||||||| | Sbjct 183 GAAGCAGAAACCGAAGTTGGATCTAGCACCGCAGTGGATGAAGCACCGAAAGAGTCTGCG 242 Query 291 TCTTTAATATCCGCTCTCAACGTCGAACGCGCGCTACGTGGCCTTCCAATTACAGATGTT 350 |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 243 TCTTTAATATCCGCTCTCAACGTCGAACGCGCTCTTCGTGGCCTTCCGATTACAGATGTG 302 Query 351 GATCATTATGGACGGCTTGGGATTTTCAGAAATTGTTCTTATGATCAGGTTACAATTGGT 410 ||||| ||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| Sbjct 303 GATCACTATGGACGGCTTGGGATTTCCAGAAATTGCTCTTATGATCAGGTTAGAATTGGT 362 Query 411 TACAAAGAAAGAGTTAAAGAGTTGAAGGAACAAGGACTAGATGAAGAACAACTCAAGACC 470 ||| |||| |||||||| ||| | ||||||||||| ||||| |||||||||||||||| | Sbjct 363 TACCAAGATAGAGTTAAGGAGCTAAAGGAACAAGGCCTAGACGAAGAACAACTCAAGAAC 422 Query 471 AAGATGGATCTTATCAAAGAGTCATATACGATATTGTCGACCGTGGAAGAGAGAAGAATG 530 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AAGATGGATCTTGTCAAAGAGTCATATACGATATTGTCGACCGTGGAAGAGAGAAGAATG 482 Query 531 TACGATTGGAGTCTAGCAAGAAGCGAAAAAGCAGAACGGTACGTGTGGCCATTTGAGGTT 590 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 483 TACGATTGGAGTCTAGCCAGAAGCGAAAAAGCAGAGCGGTACGTGTGGCCATTTGAGGTT 542 Query 591 GACATCATGGAACCATCCAGGGAAGAGCCACCTCCTCAGGAACCGGAAGATGTAGGACCA 650 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 543 GACATCATGGAACCATCCAGGGAAGAGCCGCCTCCTCAGGAACCGGAAGATGTCGGACCA 602 Query 651 ACGAGGATTTTGGGATACTTCATTGGAGCATGGCTTGTCCTTGGTGTTGCTCTTTCGGTT 710 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 603 ACGAGGCTTTTGGGATACTTCATTGGGGCATGGCTTGTCCTTGGTGTTGCTCTTTCTGTT 662 Query 711 GCGTTCAATCGTTAGCCAAATTTCGTTTCTTTA 743 || |||||||||||||||||| ||||||||||| Sbjct 663 GCATTCAATCGTTAGCCAAATGTCGTTTCTTTA 695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35111206557 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5