BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21940.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941688 jgi|Araly1|941688|scaffold_602232.1 1190 0.0
> Ahg941688 jgi|Araly1|941688|scaffold_602232.1
Length=837
Score = 1190 bits (644), Expect = 0.0
Identities = 777/838 (93%), Gaps = 21/838 (3%)
Strand=Plus/Plus
Query 165 TTCCAAGATTTTTCTAATAGCGATGGATTGTGTTGAATC-T-T-A--TT--TA--TCCGG 215
|||||||| ||||||| ||||||||||| |||||||||| | | | || || |||||
Sbjct 1 TTCCAAGA-TTTTCTACTAGCGATGGATAGTGTTGAATCTTATGAGTTTAATATCTCCGG 59
Query 216 AGATAATTCTGATGAATCTCCGGTGATGCATACTTGGTTttctccgtctccgtctccgtc 275
|||||||||||||||||||||| ||||| || |||| | | | |||||||| |||||
Sbjct 60 CGATAATTCTGATGAATCTCCGGGGATGCGTAGTTGG---T-T-C-TCTCCGTCCCCGTC 113
Query 276 tgactcttcctcttctccttcatcttctgcttcttcttccATTGGGAGGAATAGCGACGA 335
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 114 TGACTCTTCCTCTTCTCCTTCTTCTTCTGTTTCTTCTTCCATTGGGAGGAATAGCGACGA 173
Query 336 CGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCC 395
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TGGTGAGAAATCTTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCC 233
Query 396 GTATAAAGGTCCTCTTGAAATGATGGAATCTCTCGAACAAGTCTTACCTGTTAGGAAAGG 455
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 234 GTATAAAGGTCCTCTTGAAATGATGGAGTCTCTCGAACAAGTCTTACCTGTTAGGAAAGG 293
Query 456 GATATCGAAGTATTACAGTGGAAAGTCAAAGTCTTTTACTAATTTAACGGCGGAGGCAGC 515
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 294 GATATCGAAGTATTACAATGGAAAGTCAAAGTCTTTTACTAATTTTGCGGCGGAGGCAGC 353
Query 516 TTCGGCGTTGACTTCTTCTTCGTCGATGAAAGATTTAGCGAAGCCGGAGAATCCTTACAG 575
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 354 GTCGGCGTTGACTTCTTCTTCGTCGATGAAAGATTTAGCGAAGCCGGAGAATCCCTACAG 413
Query 576 TAGGAGGAGGAGGAATCTCCTCTGCCATCAGATTTGGGAAAATAACAAGACGACTCCACG 635
| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 414 TCGGAGGAGGAGGAATCTTCTCTGCCATCAGATTTGGGAGAATAACAAGACGACACCACG 473
Query 636 TGGTGGGATCTCGAAGAAACACGTTATGAGTTCTAGCAGAAGCGCTTTGACGCTAGCTAT 695
||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 474 TGGCGGGATCTCGAAGAAACACGTTATGAGTTCGAGTAGAAGTGCTTTGACGCTTGCTAT 533
Query 696 GGCTGTTGCGGCTGGTGTGATGACCGGAGAAGGATCTTCT-TCCGGAGGTGACTCGTCGC 754
||| |||||||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct 534 GGCGGTTGCGGCTGGTGTGATGACCGGAGAAGGATCTT-TATCAGGTGGTGACTCGTCGC 592
Query 755 CGGGATCAAGTCCGACGACTTCTGGATCTCCTCCGAGGCAGCTACATCATCATCAACATC 814
|||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||||
Sbjct 593 GGGGATCAAGTCCGACGACATCTGGATCTCCACCGAGGCAGATACATCATCA--A-CATC 649
Query 815 AGATGAAGAAGCTTCCTCCGTTGTATCCTAGGAGTCAAGGGTCTTTTGGTAATTTGACTT 874
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 650 AGATGAAGAAGCTTCCTCCCTTGTATCCTAGGAGTCAAGGGTCTTTTGGTAATTTGACGT 709
Query 875 CGTCTCAGTCGTCGTTGGGTTTTTGTGCCTGGAGATCGTTTTCGGTGGCTGATTTTCCGA 934
|||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||
Sbjct 710 CGTCTCAGTCGTCGTTGGGTTTTTGTTCCTGGAGATCGCATTCTGTGGCGGATTTTCCGA 769
Query 935 GGTGTTTTCCGGCGACGGCGAGTGGGATTGGGTTTAATGACTCGTAGGAAATGATGAT 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GGTGTTTTCCGGCGACGGCGAGTGGGATTGGGTTTAATGACTCGTAGGAAATGATGAT 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5