BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22060.1 Length=1565 Score E Sequences producing significant alignments: (Bits) Value Ahg489058 jgi|Araly1|489058|fgenesh2_kg.6__2192__AT5G22060.1 2355 0.0 Ahg937016 jgi|Araly1|937016|scaffold_501207.1 1260 0.0 > Ahg489058 jgi|Araly1|489058|fgenesh2_kg.6__2192__AT5G22060.1 Length=1524 Score = 2355 bits (1275), Expect = 0.0 Identities = 1412/1478 (96%), Gaps = 9/1478 (1%) Strand=Plus/Plus Query 90 TTAttttttttAGGGTTTTCGTAAGAACAGAGCAAAAAACATGTTTGGAAGAGGACCTTC 149 ||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||| Sbjct 54 TTATTTTTTTTAGGGTTTTCGTAAG-A-AGAG-AGAAAACATGTTTGGAAGAGGACCTTC 110 Query 150 AAGGAAGAGCGATAACACAAAGTTCTACGAGATCCTTGGTGTTCCTAAGACCGCAGCACC 209 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 111 AAGGAAGAGCGATAACACCAAGTTCTACGAGATCCTTGGTGTTCCTAAGACCGCATCACC 170 Query 210 AGAAGATCTCAAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGG 269 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 GGAAGATCTCAAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGG 230 Query 270 TGATCCCGAAAAGTTTAAAGAGTTAGCACAGGCTTATGAAGTT-TTAAGTGATCCTGAGA 328 ||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||| Sbjct 231 AGATCCCGAAAAGTTTAAAGAGCTAGCTCAGGCTTATGAAGTTCTT-AGTGATCCTGAGA 289 Query 329 AGCGTGAGATCTATGATCAATATGGGGAAGATGCACTCAAGGAAGGAATGGGTGGTGGAG 388 |||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 290 AGCGTGAGATCTATGACCAATATGGGGAGGATGCACTCAAGGAGGGAATGGGTGGTGGAA 349 Query 389 GTGGTGGACACGATCCATTTGATATCTTCTCTTCCTTCTTTGGTAGTGGTGGACACCCAT 448 | ||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||| Sbjct 350 GCGGTGGGCACGATCCGTTTGATATCTTCTCTTCCTTCTTTGGTGGTGGTGGAAACCCAT 409 Query 449 TCGGAAGTCATAGCCGGGGAAGGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCTTGA 508 ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| Sbjct 410 TCGGAGGTCATAGCCGGAGAAGAAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCCTGA 469 Query 509 AGGTTTCCTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGG 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 AGGTTTCCTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGG 529 Query 569 CTTTGTGCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTG 628 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 TTTTGTGCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTG 589 Query 629 GCTGTCAAGGTTCGGGAATGAAGATCTCGATCAGGCAGTTTGGACCTGGAATGATGCAGC 688 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| Sbjct 590 GCTGTCAAGGTTCGGGAATGAAGGTCTCGATCAGGCAGGTTGGACCTGGAATGATTCAGC 649 Query 689 AGGTGCAGCATGCTTGTAATGATTGCAAAGGCACAGGAGAGACCATCAATGATCGGGACA 748 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 650 AGATGCAGCATGCTTGTAATGATTGCAAGGGCACAGGAGAGACCATCAATGATCGGGACA 709 Query 749 GGTGTCCACAATGCAAAGGAGAGAAGGTTGTCTCTGAGAAGAAGGTGCTTGAAGTAAATG 808 |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| Sbjct 710 GGTGTCCACAATGCAAAGCAGAGAAGGTTGTTTCCGAGAAGAAGGTGCTTGAAGTAAATG 769 Query 809 TGGAGAAGGGAATGCAACACAATCAGAAGATCACATTCAGTGGACAAGCCGATGAAGCGC 868 |||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| Sbjct 770 TGGAGAAGGGAATGCAACACAATCAGAAGATCACGTTCAATGGACAAGCAGATGAAGCGC 829 Query 869 CTGATACTGTCACCGGAGATATAGTGTTTGTCATTCAGCAGAAGGAGCACCCAAAGTTCA 928 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 830 CTGATACTGTTACCGGAGATATAGTGTTCGTCATTCAGCAGAAGGAGCACCCAAAGTTCA 889 Query 929 AAAGAAAGGGTGAGGATCTCTTTGTGGAGCACACCATCTCTCTAACCGAGGCCTTGTGTG 988 |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 890 AAAGAAAGGGGGATGATCTCTTTGTGGAGCACACCCTCTCTCTAACCGAGGCCTTGTGTG 949 Query 989 GCTTCCAGTTTGTCTTGACCCATTTGGACAAAAGACAGCTTCTCATCAAATCCAAGCCCG 1048 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 950 GCTTCCAGTTTGTTTTGACCCATTTGGACAAAAGGCAGCTTCTCATCAAATCCAATCCCG 1009 Query 1049 GAGAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACC 1108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 GAGAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACC 1069 Query 1109 AAAGGCCGTTCATGAAGGGTAAGCTATACATTCACTTCACGGTTGAATTCCCGGAATCGC 1168 ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||| Sbjct 1070 AAAGGCCGTTCATGAAGGGTAAGCTATACATCCACTTCACTGTTGAGTTCCCGGATTCGC 1129 Query 1169 TGAGCCCGGATCAGACAAAGGCCATTGAAGCAGTTTTGCCAAAGCCAACCAAGGCAGCTA 1228 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1130 TGAGCCCAGATCAGACAAAGGCCATTGAAGCAGTTTTGCCAAAGCCGACCAAGGCAGCTA 1189 Query 1229 TAAGCGATATGGAAATAGACGACTGCGAAGAGACGACTCTGCATGATGTGAACATTGAGG 1288 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1190 TAAGTGATATGGAAATAGACGAGTGCGAAGAGACGACTCTGCATGATGTGAACATTGAGG 1249 Query 1289 ATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGACGATGAGGAAGATC 1348 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1250 ATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGACGATGAGGATGAAC 1309 Query 1349 ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGTGATCAACATGCGCATCTTAGT 1408 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1310 ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGTGATCCACATGCGCATCTTAGT 1369 Query 1409 GATCTCCAATATTTGCTTCTGTCTTTTCTCCTTTTCATTGTATTATTTTTGGGTCTTTTT 1468 |||| |||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||| Sbjct 1370 GATCCCCAACATTTGCTTCT-TCTTTTCTCTTTTTCGTTGTATTATTTTTGGGTCTTTTT 1428 Query 1469 ATAGACTTTGCCAATTCAGTGGGAAGAACCTCGTCCTAATTCAAA-TCCTTGTTACACCA 1527 ||||||||||||||||||||||||||||||||||||||||||||| ||||| | | || | Sbjct 1429 ATAGACTTTGCCAATTCAGTGGGAAGAACCTCGTCCTAATTCAAAATCCTTATCA-AC-A 1486 Query 1528 ttttttttGGTTTGAGAAATAAACTTGTAGTTCTTGAG 1565 |||||||||||||||||||||||||||||||||||||| Sbjct 1487 TTTTTTTTGGTTTGAGAAATAAACTTGTAGTTCTTGAG 1524 > Ahg937016 jgi|Araly1|937016|scaffold_501207.1 Length=1386 Score = 1260 bits (682), Expect = 0.0 Identities = 1108/1308 (85%), Gaps = 51/1308 (4%) Strand=Plus/Plus Query 107 TTCGTAAGAACAGAGCAAAAAACATGTTTGGAAGAGGACCTTC-AAGGAAGAGCGATAAC 165 ||||| ||||| | || |||| ||||| || |||||||| || || ||||||||| ||| Sbjct 1 TTCGTTAGAAC-G-GC-GAAAAGATGTTCGGTAGAGGACCCTCGAA-GAAGAGCGACAAC 56 Query 166 ACAAAGTTCTACGAGATCCTT-GGTGTTCCTAAGACCGCAGCACCAGAAGATCTCAAGAA 224 || |||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||| Sbjct 57 ACTAAGTTCTACGAGAT-CTTAGGTGTTCCTAAGAGCGCATCACCAGAAGATCTCAAGAA 115 Query 225 AGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGGTGATCCCGAAAAGTT 284 |||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct 116 AGCTTACAAAAAAGCTGCTATCAAGAACCATCCTGATAAGGGTGGAGATCCCGAGAAGTT 175 Query 285 TAAAGAGTTAGCACAGGCTTATGAAGTT-TTAAGTGATCCTGAGAAGCGTGAGATCTATG 343 ||||||||||| || |||||||||||| || ||||| || |||||||||||||| |||| Sbjct 176 CAAAGAGTTAGCTCAAGCTTATGAAGTTCTT-AGTGACCCGGAGAAGCGTGAGATTTATG 234 Query 344 ATCAATATGGGGAAGATGCACTCAAGGAAGGAATGGGTGGTGGAGGTGGTGGACACGATC 403 | || ||||| || |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 235 ACCAGTATGGAGAGGATGCACTCAAGGAAGGAATGGGTGGTGGAGGAGGTGGACATGATC 294 Query 404 CATTTGATATCTTCTCTTCCTTCTTTGGTAGTGGTGGACACCCATTCGGA-A--GT--CA 458 |||||||||| ||||| ||||||||| | || | | | ||| || ||| | || | Sbjct 295 CATTTGATATTTTCTCATCCTTCTTT-G--GTCGAAG-C-CCC-TTTGGAGATGGTGGTA 348 Query 459 -TAGCCGGGGAAGGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCTTGAAGGTTTC-C 516 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 349 GCAGCCGGGGAAGGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCTTTGAAGGTTTCTC 408 Query 517 TTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGGCTTTGTGC 576 || |||||||| || || ||||||| ||||||||||||||||||||||| ||| | ||| Sbjct 409 TT-GAGGATGTGTACCTTGGAACAATGAAGAAGCTCTCACTTTCTAGGAATGCTCTCTGC 467 Query 577 TCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTGGCTGTCAA 636 |||||||||||||| ||||| ||||| |||||||| || |||||||||||||| |||||| Sbjct 468 TCAAAGTGTAACGGAAAGGGGTCAAAATCTGGAGCCTCCATGAAATGTGGTGGATGTCAA 527 Query 637 GGTTCGGGAATGAAGATCTCGATCAGGCAGTTTGGACCTGGAATGATGCAGCAGGTGCAG 696 ||||| || |||||| | || || |||||| | |||||||||||||| |||||| ||||| Sbjct 528 GGTTCTGGTATGAAGGTGTCAATTAGGCAGCTCGGACCTGGAATGATCCAGCAGATGCAG 587 Query 697 CATGCTTGTAATGATTGCAAAGGCACAGGAGAGACCATCAATGATCGGGACAGGTGTCCA 756 ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 588 CATGCATGTAATGAATGCAAAGGAACAGGTGAGACCATCAATGATCGCGACAGATGTCCG 647 Query 757 CAATGCAAAGGAGAGAAGGTTG-TCTC-TGAGAAGAAGGTGCTTGAAGTAAATGTGGAGA 814 |||||||||||||| ||||| | | || ||||||||||||||||||||| |||||||||| Sbjct 648 CAATGCAAAGGAGACAAGGT-GAT-TCCTGAGAAGAAGGTGCTTGAAGTGAATGTGGAGA 705 Query 815 AGGGAATGCAACACAATCAGAAGATCACATTC-AGTGGACAAGCCGATGAAGCGCCTGAT 873 ||||||||||||||| |||||||||||||||| | |||||||| |||||||||||||| Sbjct 706 AGGGAATGCAACACAGTCAGAAGATCACATTCGAA-GGACAAGCGGATGAAGCGCCTGAC 764 Query 874 ACTGTCACCGGAGATATAGTGTTTGTCATTCAGCAGAAGGAGCACCCAAAGTTCAAAAGA 933 |||||||| |||||||||||||||||| |||||||||| ||||| || |||||||| ||| Sbjct 765 ACTGTCACTGGAGATATAGTGTTTGTCCTTCAGCAGAAAGAGCATCCGAAGTTCAAGAGA 824 Query 934 AAGGGTGAGGATCTCTTTGTGGAGCACAC-CATCTCTCTAACCGAGGCCTTGTGTGGCTT 992 |||||||| || ||||||||||||||||| | | |||||||| || || || |||||||| Sbjct 825 AAGGGTGAAGACCTCTTTGTGGAGCACACACTT-TCTCTAACAGAAGCTTTATGTGGCTT 883 Query 993 CCAGTTTGT-CTTGACCCATTTGGACAAAAGACAGCTTCTCATCAAATCCAAGCCCGGAG 1051 || ||||| || ||| || ||||| ||| | |||||||| ||||| || || || | Sbjct 884 TCAATTTGTTCT-GACTCACTTGGATGGCAGAAATCTTCTCATTAAATCTAATCCTGGGG 942 Query 1052 AGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACCAAA 1111 ||||||| |||||||||||||||||||| || || ||||| |||||||| |||||||| | Sbjct 943 AGGTCGTGAAACCTGATTCATACAAGGCAATTAGCGATGAAGGAATGCCGATATACCAGA 1002 Query 1112 GGCCGTTCATGAAGGGTAAGCTATACATTCACTTCACGGTTGAATTCCCGGAATCGCTGA 1171 |||| ||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 1003 GGCCATTCATGAAGGGTAAGCTCTACATCCACTTCACAGTGGAGTTCCCAGACTCGCTGA 1062 Query 1172 GCCCGGATCAGAC-AAAGGCCATTG-AAGCAGTTTTGCC-AAAGCC--AACCAAGGCAGC 1226 |||| ||||| || |||| | | || |||| || |||| ||| || ||| || || Sbjct 1063 GCCCTGATCAAACCAAAG-C-ACTGGAAGCTGTGCTGCCTAAACCCTCAAC-AACTCAA- 1118 Query 1227 TATAAGCGATATGGAAATAGACGACTGCGAAGAGACGACTCTGCATGATGTGAACATTGA 1286 | | || || ||||| ||||| || ||||| ||||| || || || ||||| |||||||| Sbjct 1119 T-TGAGTGACATGGAGATAGATGAATGCGAGGAGACCACGCTCCACGATGTCAACATTGA 1177 Query 1287 GGATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGA---TGACGATGAGGA 1343 |||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| || Sbjct 1178 GGATGAAATGAAGAGGAAGGCACAAGCTCAAAGAGAGGCTTATGACGATGACGATGAAGA 1237 Query 1344 AGAT--C-A-CCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGT 1387 ||| | | ||| || |||||||| | ||||||||||| ||||||| Sbjct 1238 TGATGACCATCCC-GGTGGTGCTCAAAGGGTGCAATGTGCTCAGCAGT 1284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58620887055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5