BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22080.1 Length=1042 Score E Sequences producing significant alignments: (Bits) Value Ahg489060 jgi|Araly1|489060|fgenesh2_kg.6__2194__AT5G22080.1 1648 0.0 > Ahg489060 jgi|Araly1|489060|fgenesh2_kg.6__2194__AT5G22080.1 Length=1039 Score = 1648 bits (892), Expect = 0.0 Identities = 997/1046 (95%), Gaps = 14/1046 (1%) Strand=Plus/Plus Query 2 TCTCCGTTCTCTACTCTTGTCGTCGTTGgaagaa-gaggaagagagaggacaagagaatc 60 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 TCTTCGTTCTCTACTCTTGTCGTCGTTGGAAGAAGGAGGAAGAGAGAGGACAAGAGAATC 60 Query 61 ataagaagaagaCATAGTCATGGGAGAGGTGAAAGTAGACGACGATGCGATTCTTAAATC 120 |||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATAAGAAG-ACA-AGAGTCATGGGAGAGGTGAAAGTAGACGACGATGCGATTCTTAAATC 118 Query 121 CTTCCTCGCCGAGGTCGGAGAAGTTGAGAGAGATAACGAAGTCGGCAGGATTCTCTCATG 180 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 119 CTTCCTCGCCGAGGTCGGAGAAGTTGAGAGAGATAACGAAGTCGTCAGGATTCTCTCATG 178 Query 181 CTTCAAGCTGAATCCGTTTGAGCATCTTAACCTCTCTTTCGATTCTTCCACGGATGATGT 240 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 179 CTTCAAGCTGAACCCGTTTGAGCATCTTAACCTCTCTTTTGATTCTTCCACGGATGATGT 238 Query 241 TAAAAGGCAGTACAGAAAGATTTCTTTGATGGTTCATCCTGATAAATGCAAACATCCACA 300 |||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 239 TAAAAGGCAGTATAGAAAGATTTCTTTGATGGTGCATCCTGACAAATGCAAGCATCCACA 298 Query 301 AGCACAGGAGGCTTTCGGAGCATTGGCAAAAGCGCAACAACTGCTGCTAAACGACCAAGA 360 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 299 AGCACAGGAGGCTTTTGGAGCATTGGCAAAAGCCCAACAACTACTGCTAAACGACCAAGA 358 Query 361 AAGAGATTATATTCTTACCCAAGTCCATGCTGCAAAAGAAGAGCTTAAGATGAAGAGAAA 420 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 359 AAGAGATTATATTCTCACCCAAGTCCATGCGGCAAAAGAAGAGCTTAAGATGAAGAGAAA 418 Query 421 GAAACAGTTAAAGAAAGACACCGCCTCTAAAATAAAGTCCTTGGTTGATGAGGGAAAGCA 480 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GAAACAGTTAAAGAAAGATACCGCCTCTAAAATAAAGTCCTTGGTTGATGAGGGAAAGCA 478 Query 481 TGAGCACATATATGAGCAATCTGAGGAGTTTCAGAAGGAGCTCAAGTTAAAGGTCCGAGA 540 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TGAACACATATATGAGCAATCTGAGGAGTTTCAGAAGGAGCTCAAGTTAAAGGTCCGAGA 538 Query 541 GATATTAACAGACCAAGAGTGGCGTAGAAGAAAAATGGCAATGAGAATATCAGAAGAAGA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GATATTAACAGACCAAGAGTGGCGTAGAAGAAAAATGGCAATGAGAATATCAGAAGAAGA 598 Query 601 GGGGAGACTGAAGAAGGATGAAGCAGAACAAAAGGAGATATGGAAGAAAAAGCGTGAGCA 660 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GGGAAGACTGAAGAAGGATGAAGCAGAACAAAAGGAGATATGGAAGAAAAAGCGTGAGCA 658 Query 661 TGAAGAACAGTGGGAAGGAACAAGAGAAAAAAGGGTATCAAGCTGGAGAGACTTTCAGAA 720 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TGAAGAACAGTGGGAAGGGACAAGAGAAAAAAGGGTATCAAGCTGGAGAGACTTTCAGAA 718 Query 721 AGCAGGAAAGAAGGCCAAAAAAGGAGAGACGCGACCTCCAAAATTGAAGACAGAGGATCC 780 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 719 ATCAGGAAAGAAGGCCAAAAAAGGAGAGACGCGTCCTCCAAAATTGAAGACAGAGGATCC 778 Query 781 GAACAAATCATACGTCCAAAGGCCGGTCAAGAAAGGCTGATCTCTGCCTTCATTTGTTTT 840 ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 779 GAACAAATCGTACGTCCAAAGGCCGGTCAAGAAAGGCTGATCTCTACCTTCTTTTGTTTC 838 Query 841 TGCTGTTGTTGACATTGATAGATATTGGTCTTCTCGAGGATAATCTCAGACTCTCTCTTC 900 ||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||| Sbjct 839 TGCTGTTGTTGACATTGATAGAT-T-GGTCTTCTAGAGGATACTCTCAGACTCTCTCTTC 896 Query 901 TTGTGTCTGTGTTTCTTCCCTTTGTACATCACCAACTTCATTCGTCTTTCCAAATACATC 960 |||||||||| | |||| |||||||||||| |||||||||| ||||||||||||||||| Sbjct 897 TTGTGTCTGT-T--CTTCTCTTTGTACATCATCAACTTCATTTGTCTTTCCAAATACATC 953 Query 961 AGAGACAGGGAAGCGATATCTCACTTCTCACAT--T-ATGACCTTAACTT---ATTGCGT 1014 ||| ||||||||| |||||||||||||||||| | ||||||||||||| ||||||| Sbjct 954 AGAAACAGGGAAGAGATATCTCACTTCTCACACGCTCATGACCTTAACTTTGTATTGCGT 1013 Query 1015 CTCAGTCCAGATGATGTCATTAGCCT 1040 || ||||||||||||||| ||||||| Sbjct 1014 CTTAGTCCAGATGATGTCTTTAGCCT 1039 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38771006589 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5