BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22210.1
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489071 jgi|Araly1|489071|fgenesh2_kg.6__2205__AT5G22210.2 407 4e-113
> Ahg489071 jgi|Araly1|489071|fgenesh2_kg.6__2205__AT5G22210.2
Length=453
Score = 407 bits (220), Expect = 4e-113
Identities = 282/309 (91%), Gaps = 15/309 (5%)
Strand=Plus/Plus
Query 17 TTCGACTCACTTTCGGTTTCTGATGTTTTGTCTCTCTGATTG--A-A-A----------- 61
||| |||||||||||||||||||||||||||||| ||||||| | | |
Sbjct 1 TTCAACTCACTTTCGGTTTCTGATGTTTTGTCTCCCTGATTGAAAGAGATGGGGTTTTCC 60
Query 62 AAGATGGGAAACAAAGCTACAACGGTGAAAGAAGAACGCGAAGAGATCCATTTGAAGATT 121
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 61 AAGATGGGAAACAAAGCTACAACGGTGAAAGAAGAACGGGAAGAGATCCACTTGAAGATT 120
Query 122 GTACCTCCATTGGACAAAGTTTTTCTGCGTTGGCTCGCAAGAGATCTCCAGAGAGTTCAT 181
|||||||||||||||||||||||||| ||||||||||| |||||||| || ||| |||||
Sbjct 121 GTACCTCCATTGGACAAAGTTTTTCTACGTTGGCTCGCGAGAGATCTACAAAGATTTCAT 180
Query 182 GGATTCAAACCGAAGAACAACACTCGTGCGATCACTCCTCCAGATAGCTACATCGAGTTT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGATTCAAACCGAAGAACAACACTCGTGCGATCACTCCTCCAGATAGCTACATCGAGTTT 240
Query 242 ATGCGGTTAAATGGATCGCTTGATGTAGATTTAGATGACCCTGATCTTGCCCATTTGTTC 301
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 241 ATGCGGTTAAATGGATCGCTTGATGTGGATTTAGATGACCCTGAACTTGCCCATCTGTTC 300
Query 302 AAGTAAAAA 310
|||||||||
Sbjct 301 AAGTAAAAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16941081516
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5