BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22300.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894102 jgi|Araly1|894102|Al_scaffold_0006_2098 1522 0.0
Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1 409 3e-113
> Ahg894102 jgi|Araly1|894102|Al_scaffold_0006_2098
Length=1071
Score = 1522 bits (824), Expect = 0.0
Identities = 996/1079 (92%), Gaps = 12/1079 (1%)
Strand=Plus/Plus
Query 203 ATGTCCATGCAACAAGAAACGTCTCACATGACGGCGGCTCCACAGACCAACGGCCATCAA 262
||| ||||||||||||||| ||||| | ||||||||| | | || || | |||||
Sbjct 1 ATGACCATGCAACAAGAAATGTCTCTTGTCACGGCGGCT-C-C--TCC--CGTCGATCAA 54
Query 263 ATCTTCCCTGAGATTGACATGTCCGCCGGCGATTCCTCCTCCATCGTACGAGCTACAGTC 322
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 55 ATCTTCCCTGAGGTTGACATGTCCGCCGGCGATTCTTCCTCCATCGTACGAGCTACCGTC 114
Query 323 GTCCAAGCCTCTACAGTCTTCTACGATACTCCCGCCACGCTAGATAAGGCAGAGAGACTG 382
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 115 GTCCAAGCCTCCACCGTCTTCTACGATACTCCCGCCACGCTAGATAAGGCGGAGAGATTG 174
Query 383 CTTTCTGAGGCAGCGGAGAATGGATCTCAGCTAGTGGTGTTCCCGGAGGCTTTCATCGGT 442
||| ||||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 175 CTTGCTGAGGCGGCGGACAATGGGTCTCAGCTTGTGGTGTTCCCGGAGGCTTTTATCGGT 234
Query 443 GGATATCCACGTGGCTCTACCTTTGAATTGGCTATTGGTTCTCGTACCGCTAAAGGACGA 502
|||||||| |||||||||| ||| |||||||| |||||| |||| |||||||||||| ||
Sbjct 235 GGATATCCTCGTGGCTCTAGCTTCGAATTGGCGATTGGTGCTCGCACCGCTAAAGGAAGA 294
Query 503 GATGACTTTCGCAAGTACCATGCTTCTGCCATTGATGTTCCTGGCCCTGAAGTGGAACGA 562
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 295 GATGATTTTCGCAAATACCATGCTTCTGCCATTCATGTTCCTGGCCCTGAAGTGGAACGA 354
Query 563 TTAGCGTTAATGGCCAAGAAGTACAAAGTATACTTGGTTATGGGTGTGATAGAGAGGGAA 622
|| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 355 TTGGCGGAAATGGCCAAGAAGTATAAAGTATTCTTGGTTATGGGTGTGATAGAGAGGGAA 414
Query 623 GGCTACACGCTATACTGCACCGTTCTTTTCTTCGATTCACAAGGTCTGTTCTTAGGTAAG 682
||||| |||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct 415 GGCTATACGCTATATTGCACCGTTCTTTTCTTTGATTCACAAGGTCAGTTCTTGGGTAAG 474
Query 683 CACCGCAAACTCATGCCTACAGCTCTTGAACGTTGCATTTGGGGATTTGGAGATGGATCA 742
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 CATCGGAAACTCATGCCTACAGCTCTTGAACGTTGCATCTGGGGATTTGGAGATGGATCA 534
Query 743 ACCATCCCTGTGTTCGATACTCCTATTGGGAAAATCGGTGCTGCTATTTGTTGGGAAAAT 802
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 535 ACCATCCCTGTTTTCGATACTCCTATTGGCAAAATCGGTGCTGCTATTTGTTGGGAAAAT 594
Query 803 AGGATGCCTTCTTTGAGAACCGCAATGTATGCCAAAGGCATTGAGATTTATTGTGCACCT 862
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGGATGCCGTCTTTAAGAACCGCAATGTATGCCAAAGGCATTGAGATTTATTGTGCACCT 654
Query 863 ACTGCTGATTCAAGAGAAACTTGGCTAGCATCAATGACTCATATTGCACTTGAGGGTGGA 922
||||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 655 ACTGCTGATTCTAGAGAAACTTGGCTAGCATCAATGACTCACATCGCTCTTGAAGGTGGA 714
Query 923 TGTTTTGTTTTGTCAGCTAACCAGTTTTGTCGTCGGAAAGACTATCCTTCTCCGCCGGAA 982
|||||||||||||| ||||||||||||||||| ||||||||||||||| || | || |||
Sbjct 715 TGTTTTGTTTTGTCGGCTAACCAGTTTTGTCGCCGGAAAGACTATCCTCCTTCACCAGAA 774
Query 983 TACATGTTTTCCGGTTCAGAAGAGAGCCTAACACCGGACTCTGTTGTCTGCGCTGGTGGA 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 775 TACATGTTTTCCGGTTCAGAAGAGAGCCTAACACCGGACTCTGTTGTCTGCGCCGGTGGA 834
Query 1043 AGCTCTATCATTTCACCTTTGGGAATTGTTTTAGCTGGACCAAACTATAGA-GGAGAAGC 1101
|||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||
Sbjct 835 AGCTCTATCATTTCACCTTTGGGAATCGTTTTAGCTGGACCAAACTAT-GAAGGAGAGGC 893
Query 1102 TCTTATCACAGCTGATCTAGATCTTGGGGACATAGCACGAGCCAAGTTTGATTTTGATGT 1161
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 TCTTATCACAGCTGATCTAGATCTTGGGGACATAGCACGAGCCAAGTTTGATTTCGATGT 953
Query 1162 GGTCGGACATTACTCGAGGCCTGAAGTGTTTAGCTTGAACATAAGGGAGCATCCGAGAAA 1221
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGTCGGGCATTACTCGAGACCTGAAGTGTTTAGCTTGAACATAAGGGAGCATCCGAGAAA 1013
Query 1222 AGCGGTCAGCTTCA--AG-ACGTCAAAGGTAATGGAAGATGAATCCGTCTAACAAATGA 1277
|||||| || ||| | ||||||||||||||| |||||||||||||| |||||||||
Sbjct 1014 AGCGGTTAGTTTCTCCACTACGTCAAAGGTAATGAAAGATGAATCCGTC-AACAAATGA 1071
> Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1
Length=1095
Score = 409 bits (221), Expect = 3e-113
Identities = 726/960 (76%), Gaps = 73/960 (8%)
Strand=Plus/Plus
Query 299 TCCTCCATCGTACGAGCTA-CAGTCGTCCAAGCCTCTACAGTCTTCT-ACGATACTCCCG 356
||||||| ||| |||| || || |||| ||| | || || ||| | | ||||||||||||
Sbjct 86 TCCTCCACCGTGCGAGTTACCA-TCGTTCAATCGTCCACCGTC-TATAACGATACTCCCG 143
Query 357 CCACGCTAGATAAGGCAGAGAGACTGCT-TTCT-GAGGCAGCGGAG-AATGGAT-CTCAG 412
|||| |||| ||||| |||| | | | || | ||||| || ||| || || | | ||
Sbjct 144 CCACATTAGACAAGGCGGAGA-AGT-TTATTGTAGAGGCGGC-GAGCAA-GGGTGCGAAG 199
Query 413 CTAGTGGTGTTCCCGGAGGC-TTTCATCGGTGGATATCCACGTGGCTCTACCTTTGAATT 471
|||||| ||||||||||||| ||| |||||||| ||||| ||||| | || |||| ||
Sbjct 200 CTAGTGTTGTTCCCGGAGGCGTTT-ATCGGTGGTTATCCTCGTGGTTTTAGGTTTGGTTT 258
Query 472 GGCTATTGG-TTCTCGTACCGCTA-AAGGACGAGATGACTTTCGCAAGTACCATGCTTCT 529
|| | || | || || || | |||| || ||||| || ||||| ||||||||||||
Sbjct 259 AGCGGTGGGAGT-TCATAACG-AAGAAGGCCGTGATGAGTTCCGCAACTACCATGCTTCT 316
Query 530 GCCATTGATGTTCCTGGCCCTGAAGTGGAACGATTAGCGTTA-ATGGCCAAGAAGTACAA 588
|| ||| | ||||||||||||||||| ||| |||| || | | ||||| ||| ||||
Sbjct 317 GCTATTAAAGTTCCTGGCCCTGAAGTAGAAAGATTGGC-TGAGTTGGCCGGGAAAAACAA 375
Query 589 AGTATACTTGGTTATGGGTG-TGATAGAGAGGGAAGGCTACACGCTATACTGCACCGTTC 647
|| ||||||| ||||| | | ||||||| ||| || || || || || || |||| ||
Sbjct 376 TGTGCACTTGGTAATGGGGGCT-ATAGAGAAGGATGGGTATACACTCTATTGTACCGCTC 434
Query 648 TTTTC-TTCGATTCACAAGGTCTGTTCTTAGGTAAGCACCGCAAACTCATGCCTACAGCT 706
||||| || | | ||||||||| |||||| ||||||||||| ||| ||||||||||| ||
Sbjct 435 TTTTCTTTAG-TCCACAAGGTCGGTTCTTGGGTAAGCACCGGAAAGTCATGCCTACATCT 493
Query 707 CTT-GAACGTTGCATTTGGGGAT-TTGGAGATGGATCAACCATCCCTGTGTT-CGATACT 763
|| ||||||||||| ||||| | || || |||||||||||||| || || ||| |||
Sbjct 494 -TTGGAACGTTGCATATGGGG-TCAAGGGGACGGATCAACCATCCCCGT-TTACGACACT 550
Query 764 CCTATTGGGAAAATCGGTGCTGCTATTTGTTGGGAAAATAGGATG-CCTTCTTTGAGAAC 822
|| ||||| ||||| |||||||||||||| ||||| ||||| ||| || || | |||||
Sbjct 551 CCCATTGGAAAAATTGGTGCTGCTATTTGCTGGGAGAATAGAATGCCCCTC-TACAGAAC 609
Query 823 CGCAATGTATGCCAAAGGCATTGAGATTTATTGTGCACCTACTGCTGATTCAA--GA-GA 879
||| |||| || ||||||||||||||||||||||||||||||||||||| | | |
Sbjct 610 TGCATTGTACGCTAAAGGCATTGAGATTTATTGTGCACCTACTGCTGATT-ATTCGTTGG 668
Query 880 AACTTGGCTAGCATCAATGACTCATATTGCACTTGAGGGTGGATGTTTTGTTTTGTCAGC 939
|| | ||| |||||| |||| ||| ||||| | || ||||||||||| || ||||||||
Sbjct 669 AA-T-GGCAAGCATCGATGATTCACATTGCGGTAGAAGGTGGATGTTTCGTGTTGTCAGC 726
Query 940 TAACCAGTTTTGTC--GTCGGAAAGACTATCCTTCTCCG-CCGGAATACATGTTT--TC- 993
| ||||| || | | || ||||| | ||| | | || || ||| ||||| |
Sbjct 727 GCATCAGTTCTG-CAAG-CGCAAAGAGT-TCCCTGAACATCCTGATTACTTGTTTAATGA 783
Query 994 CGGTTCAGAAGAGAGCCTAAC-ACCG-GA-C-T-CTGTTGTCTGCGCTGGTGGAAGC-TC 1047
| || | ||| | | ||| | | || | | ||||| || | | || || || ||
Sbjct 784 CA-TT--GTAGACA-C-TAAAGAACATGATCCTACTGTT-TCCG-GA-GGCGGTAGTGTC 835
Query 1048 TATCATTTCACCTTTGGGA-ATTGTTTTAGCTGGACCAAACTATAGAGG-AGAAGCTCTT 1105
|| ||||||||||||||| | ||| | || |||||||||||| || ||| | |||
Sbjct 836 -ATTATTTCACCTTTGGGACAG-GTTCTCGCCGGACCAAACTAT-GAATCAGAGGGTCTC 892
Query 1106 ATCACAGCTGATCTAGATCTTGGGGACATAGCACGAGCCAAGTT-TGATTTTGATGTGGT 1164
||||||||||||| |||||||| || |||||| |||||||||| | | || ||||||||
Sbjct 893 GTCACAGCTGATCTTGATCTTGGTGATATAGCAAGAGCCAAGTTAT-ACTTCGATGTGGT 951
Query 1165 CGGACATTACTCGAGGCCTGA-AGTGTTTAGCTTGAACA-TAAGGGAGCATCCGA-GAAA 1221
||||||||||| | ||| || | | |||| ||||| | ||| ||||| |||| ||||
Sbjct 952 TGGACATTACTCAAAGCCAGATATT-TTTAACTTGA-CTGTAAATGAGCACCCGAAGAAA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5