BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22340.2
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489087 jgi|Araly1|489087|fgenesh2_kg.6__2221__AT5G22340.1 1696 0.0
> Ahg489087 jgi|Araly1|489087|fgenesh2_kg.6__2221__AT5G22340.1
Length=1258
Score = 1696 bits (918), Expect = 0.0
Identities = 1175/1291 (91%), Gaps = 50/1291 (4%)
Strand=Plus/Plus
Query 26 TCTCTCGCTACATGGAGAGTCTCTCGATTCCCGCCGCTTCTTGGTTTTCCGGCGGAACCA 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCGCTACATGGAGAGTCTCTCGATTCCCGCCGCTTCTTGGTTTTCCGGCGGAACCA 60
Query 86 TTCCTCCGACGAAGGTGAGAGTTTCTCCGCCGCATCATCTCCGGCGACC-TCCCAACAGG 144
||||||||||||| || ||| |||||| ||| ||||||| ||| |||| || ||||||
Sbjct 61 TTCCTCCGACGAATGTAAGAATTTCTCTACCGTATCATCTTCGGAGACCATCG-AACAGG 119
Query 145 AATTCCCATCGCTTGGCCGCCATTAATGCCGCTTCTCGCTCTGTGAGTGAGCTAGTGGAG 204
||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 AATTCCCCTCGCTTGTCCGCCATTAACGCCGCTTCTCGCTCTGTGAGTGAGCTAGTGGAG 179
Query 205 GAGGATGTGTTGCAAATGTTCATGAAAGACAGAGAAGAAAATGGAGATTTCATATCTAAA 264
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 180 GAGGATGTGTTGCAAATGTTCTTGAAAGACAGAGAAGAAAATGGAGATTTCATTTCTAAA 239
Query 265 GTTTCTGATAGGCTCTGGTTAAAGGAGATTCTCGAATCTATTGATGTTAATTCCAATGGA 324
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 240 GTTTCTGATAGGCTCTGGTTAAAGGACATTCTCGAATCTATTGATCTTAATTCTAATGGA 299
Query 325 GCTTCTTCTTCAGCTGTTGAACTAGATGATACTCGGGAAAGCTTGATAGATGGCGC---T 381
||||| |||||| |||||| |||||| || ||| ||| |||||||||| || || |
Sbjct 300 GCTTCCTCTTCAACTGTTGGACTAGA-GA--CTCAGGAGAGCTTGATAGCTGCCGTAGAT 356
Query 382 GATGATGATGA--AA-GTGGTTTCTTGAAACTTAAACCGACACAAGAATGGATTGGTTGG 438
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GATGATGATGATGAAAGTGGTTTCTTGAAACTTAAACCGACACAAGAATGGATTGGTTGG 416
Query 439 GAGAGTGATTCTGCCCCCATGAATAAGAAAGCTCTAGCTAAGGCACTACGAGATGACAGC 498
||||||||||| || ||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 417 GAGAGTGATTCCGCTCCCATTAATAAGAAAGCTCTAGCTAAGGCATTACGGGATGACAGG 476
Query 499 GAGAGAAGGAAGAAGTTTAACTTTCTGAAATATGAAGCTCTGAAGCGTGAACTCATGTAC 558
||||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 477 GAGAGAATGAAGAAATTTAACTTGCTGAAATATGAAGCTCTGAAGCGTGAACTGATGTAC 536
Query 559 CTGTCGATTGTAATTGGAACTGGATGCAGCGGATACTGTTTACTAGCTTTATCAGTTCAG 618
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 537 CTGTCGATTGTAATTGGAACTGGGTGTAGCGGATATTGCTTACTAGCTTTATCAGTTCAG 596
Query 619 GCTGCAGTCAGTTATGCAGTTGGGGTTCTATTCAGTTGCTTGTACCTTCAGCTTTTGTAT 678
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 597 GCTGCAGTCAGTTATGCAGTTGGGGTTCTTTTCAGTTGCTTGTACCTTCAGCTTTTATAC 656
Query 679 GGATACGCTGATGGTCTATCACGTGAAGCTGTTCCTGATATCTTCCTGaaaaaaaagtct 738
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 657 GGATACGCTGATGGGCTTTCACGTGAAGCTGTTCCTGGTATCTTCCTGAAAAAAAAGTCT 716
Query 739 aaaaaaaTCGGGATCAGAAGTGAAGACCTTGAGGACTTTGTAGTGAGGACAATCAGGGGC 798
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 717 AAAAAAATCGGGATCAGAAGTGAAGACCTTGAGGTCTTTGTAGAAAGGACCATCAGGGGC 776
Query 799 AGTGG-CATGGCTCTCTCTTCTCCACGCTTGGTGATACCAGCTGCAATTTATGGTTTGTG 857
|| || | |||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 777 AGCGGTC-TGGCTCTCTCTTCTCCACGCCTGGTGATCCCTGCTGCAATTTATGGTTTGTG 835
Query 858 GATACTCTCTCACAAGTATTTCCAGAACGACTTGTTCGACTTTCAG-T--T-CCAGCAAT 913
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||
Sbjct 836 GATACTCTCTCACAAGTATTTCCAGAACGACTTGTTCGACTTTCAGATAGTTCCAGCCAT 895
Query 914 GGTTGGTTTGTTTGTATACAAAGCTGCAACTCTCGTTCAAGTGTACAGAGACAACCAAGA 973
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 896 GGTTGGTTTGTTTGTATACAAAGCCGCAGCTCTGGTTCAAGTGTACAGAGACAACCAAGA 955
Query 974 TCTTCAGTTCATCTTCCCAGATGACTACTAACTGCAAAGTTCACAAGCGGCCTTCCGAGA 1033
||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 956 TCTTCAGTTCATCTTCCCAGATGACTACTAACTACAAAGTTCACAAG----------AGA 1005
Query 1034 TAGACCAGGAAACCACAGAATTGTGAATTGTTCGGTACATATTTTGAGAGAGGAACAGGA 1093
||||||| || | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1006 --GACCAGGGAATCGCAGAATTGTGAATTGTTCGGTACATATTTTGAGAGAGGA---G-- 1058
Query 1094 ACAGAAGCTAGACTCATCCGCTAAGACCGAGGATATAGTGAGTTATAGATCAAAACGGCG 1153
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1059 -CAGAAGCTAGACTCATCCGCTAAGACCGTGGATATAGTGAGTTATAGATCAAAACGGCG 1117
Query 1154 TT-TTTCGGCtttttttCAAAAGCAAAGCAACCTCTTCTATTTTTTAAAACATTCTGGGT 1212
|| ||| |||| || | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1118 TTATTT-GGCTCTTCT-CAAAAGCAAAGCAACCTCTTCTATTTTTAAAAACATTCTGGGT 1175
Query 1213 T-ACT--TTT-CTAACGAAAACAATAATACAATGTTTATATGCATGACTTGAATGAGTTT 1268
| ||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1176 TTACTACTTTTCTAACGAAAACAATAATACAATGTTTATCTGCATGACTTGA-TGAGTTT 1234
Query 1269 ACAATAAACTATATTGGATTTTGCTTCTTTC 1299
|| || ||| | ||||||||||||||||
Sbjct 1235 AC--TA---TAT-T-GGATTTTGCTTCTTTC 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5