BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22350.1 Length=1851 Score E Sequences producing significant alignments: (Bits) Value Ahg941738 jgi|Araly1|941738|scaffold_602282.1 2169 0.0 > Ahg941738 jgi|Araly1|941738|scaffold_602282.1 Length=1326 Score = 2169 bits (1174), Expect = 0.0 Identities = 1277/1327 (96%), Gaps = 6/1327 (0%) Strand=Plus/Plus Query 173 AATCGATAATC-TAACCGGCATGAGGCCAATCCTATTGCCGGATCCACCCAGTCTATCTA 231 |||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||| | Sbjct 3 AATCGA-AATCGAAACCGGCATGAGGCCAATCCTGTTGCCGGATCCACCCAGTTTATCCA 61 Query 232 CCGGCGTCCCTGATATTTTCGAACAAGGCGGTTCCCATAACGTCGTCAGACGCGCCGTCG 291 ||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||| Sbjct 62 CCGGCGTACCTGATATTTTCGAACAAGGCGGTGCTCAGAACGTCGTCAGACGCGCCGTCG 121 Query 292 TCATCGGAAACGGTTTCCCTGGCTCCGAGAATCAGTGTATCGGTCTCGTTCGTGCGCTCG 351 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 122 TCATCGGAAACGGTTTCCCTGGCTCCGAGAATCAGTGTATCGGTCTCGTTCGTGCCCTCG 181 Query 352 GCTTATCTGATAATCACCTTCTCTACCGAGTGACAAGGCCTAAAGGA-GGACTAAATGAG 410 ||||| | ||||||||||| |||||||||||||| |||||||||||| ||| |||||||| Sbjct 182 GCTTAGCCGATAATCACCTACTCTACCGAGTGACCAGGCCTAAAGGAGGGA-TAAATGAG 240 Query 411 TGGCTGCACTGGCTCCCAGTTGGTTTTCACAAGAAGTTGGACTTTATCCTCAGGCATATT 470 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGGCTGCACTGGCTTCCAGTTGGTTTTCACAAGAAGTTGGACTTTATCCTCAGGCATATT 300 Query 471 TACCTCTACTCCAGATTGATGCTTGGATCCAAACAAAGTAAATACATCTCATCTGTACCC 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TACCTCTACTCCAGATTGATGCTTGGATCCAAACAAAGTAAATACATCTCATCTGTACCC 360 Query 531 TCAGAGAATGGTGGTAATGTAGGTTTGGCCTCTATTCTAGAGGCTGATGTGAAGGGCATT 590 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 361 TCAGAGAATGGTGCTAATGTAGGTTTGGCGTCTATTCTAGAGGCTGATGTGAAGAGCATT 420 Query 591 GTAAATTTGGCCCGTCAGACCTATGAAAAGGATGGCCCGTTGATCGTGATTGCATGTGGA 650 || ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 421 GTGAATATGGCCCGTCAGACCTATGAAAAGGATGGCCCTTTGGTCGTGATTGCATGTGGA 480 Query 651 AGAGATACTATTTCTATTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTT 710 |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 481 AGAGATACAATTTCTATTGCTAGCTCGATAAGGCGTTTGGCTTCGGAAAACGTCTTCGTT 540 Query 711 GTTCAGATACAACATCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCTCGT 770 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 541 GTTCAGATAAAACATCCTAGATCACATTTAAATAGGTTTGATATGGTGATCACGCCTCGT 600 Query 771 CACGACTACTATCCTCTAACACTCGAAGCGCAGGAGCAGGTCCCTAGATTTATGCGTAGT 830 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 601 CACGACTACTATCCTCTAACACTCGAAGCGCAAGAGCAGGTTCCTAGATTTATGCGTAGT 660 Query 831 TGGATAACTCCACGTGAACCTCCTCAGGATCATGTAGTCTTGACTACTGGAGCTCTACAC 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TGGATAACTCCACGTGAACCTCCTCAGGATCATGTAGTCTTGACTACTGGAGCTCTACAC 720 Query 891 CAGATCGATTATGCCTCACTCCGTAAAGCAGCTAGTGCCTGGCATGATGAATTTGCTGCT 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CAGATCGATTATGCCTCACTCCGTAAAGCAGCTAGTGCCTGGCATGATGAATTTGCTGCT 780 Query 951 CTTCCGAAGCCTTTAGTTGTGGTTAACATCGGCTGGCCTAGAAGTAACTGTCGGTATGGA 1010 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CTTCCAAAGCCGTTAGTTGTGGTTAACATCGGCTGGCCTAGAAGTAACTGTCGGTATGGA 840 Query 1011 GCAGACCTCGCAAAACAGCTAACAGACTCCCTTCTTAATGTCCTTGCTACCTGTGGAAGT 1070 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GCAGACCTAGCAAAGCAGCTAACAGACTCCCTTCTTAATGTCCTTGCTACCTGTGGAAGT 900 Query 1071 GTCAGAATTACTCTTTCCTACAAAACCCCTGCAAAGGTTTCAAGAGTAATCTTCAAAGAA 1130 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GTCAGAATTGCTCTTTCCTACAAAACCCCTGCAAAGGTTTCAAGAGTAATCTTCAAAGAA 960 Query 1131 CTTGGAGATAACCCCAAAGTTTACATATGGAATGGCCAAGAACCAAATCCTTACATGGGG 1190 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 961 CTTGGAGATAACCCCAAAGTTTACATATGGAATGGCCAAGAACCAGATCCTTACATGGGA 1020 Query 1191 CATCTAGCTTGGGGTGATGCTTTTGTGGTGACAGCAGATTCAGTCAGTCTGATAAGCGAA 1250 |||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||| Sbjct 1021 CATCTAGCTTGGGGTGATGCCTTTGTGGTAACAGCAGATTCTGTCGGTCTGATAAGCGAA 1080 Query 1251 GCTTGTAGCACCGGGAAACCAGTGTACGTTGTTGGAGCCGATCACTGTAAATGGAAGATT 1310 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1081 GCTTGTAGCACTGGGAAACCAGTGTATGTTGTTGGAGCCGATCACTGTAAATGGAAGATT 1140 Query 1311 GCAGAATTCCAAAAGTCTTTGAGGGAGCGAGGAGTTGTCCGCTCATTTACAGGTTTCGAA 1370 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1141 GCAGAATTCCAAAAATCTTTGAGGGAGCGAGGAGTCGTCCGCTCATTTACAGGTTTCGAA 1200 Query 1371 GATATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCTACGAGA 1430 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1201 GATATGTCGGAAAGTTGGAGTTATCCGCCATTGAGTGACACAGCAGAGGCAGCTACGAGA 1260 Query 1431 ATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTTGAATTA-TATACTCTTC 1489 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1261 ATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTTGAAT-ACTATACTCTTC 1319 Query 1490 TTTGCTG 1496 ||||||| Sbjct 1320 TTTGCTG 1326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69514697125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5