BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22380.1 Length=919 Score E Sequences producing significant alignments: (Bits) Value Ahg489094 jgi|Araly1|489094|fgenesh2_kg.6__2228__AT5G22380.1 1153 0.0 Ahg897197 jgi|Araly1|897197|Al_scaffold_0005_1163 250 1e-65 > Ahg489094 jgi|Araly1|489094|fgenesh2_kg.6__2228__AT5G22380.1 Length=816 Score = 1153 bits (624), Expect = 0.0 Identities = 755/819 (92%), Gaps = 5/819 (1%) Strand=Plus/Plus Query 16 AGCTACAACTAATTAGAGTGTTTCTTGTTGTTAAAAATATCGTACAAAAATGGCCGATGA 75 |||||||| |||||||||| |||||| | ||| |||||||||||||||||| ||||| Sbjct 1 AGCTACAATTAATTAGAGTTTTTCTTAATATTACCTATATCGTACAAAAATGGCGGATGA 60 Query 76 GGTCACAATCGGGTTTCGCTTCTATCCCACGGAAGAAGAACTGGTTTCGTTCTACCTACG 135 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 61 GGTCACAATCGGGTTTCGCTTCTATCCCACGGAAGAGGAACTGGTTGCGTTCTACCTACG 120 Query 136 AAACCAGCTCGAAGGAAGGAGTGATGACTCAATGCATCGTGTCATTCCCGTACTTGACGT 195 ||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| || Sbjct 121 AAACCAGCTTGAAGGAAGGAGTGACGACTCAATGCACCGTGTCATTCCTGTTCTTGATGT 180 Query 196 CTTTGAGGTCGAGCCTAGTCATCTTCCAAATGTTGCTGGAGTGAGATGTCGAGGAGACGC 255 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 181 CTTTGAGGTCGAGCCTAGTCATCTTCCAAATGTTGCGGGAGTGAGATGTCGAGGAGACGC 240 Query 256 TGAGCAATGGTTCTTCTTCGTGCCACGACAAGAACGCGAAGCAAGAGGAGGCAGACCGAG 315 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 241 TGAGCAATGGTTCTTCTTCGTGCCACGACAAGAACGCGAAGCTAGAGGAGGTAGACCGAG 300 Query 316 TAGAACTACTGGTTCAGGATACTGGAAAGCAACTGGATCACCTGGTCCAGTCTTTTCCAA 375 |||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 301 TAGAACCACGGGGTCAGGATACTGGAAAGCGACTGGATCACCTGGTCCTGTCTTTTCCAA 360 Query 376 AGACAACAAAATGATTGGAG-CAAAGAAAACTATGGTTTTCTACACTGGAAAAGCACCCA 434 |||||| ||||||||||| ||| |||||||||||||||||||||||| |||||||| | Sbjct 361 CGACAACCGAATGATTGGAGTCAA-GAAAACTATGGTTTTCTACACTGGGAAAGCACCAA 419 Query 435 CAGGAAGAAAAACTAAATGGAAAATGAATGAGTACCACGCCGTTGACGAAACAGTCAACG 494 | ||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||| Sbjct 420 CCGGAAGAAAAACAAAATGGAAGATGAATGAGTACAAAGCCGTTGACGAAACAGTCAACG 479 Query 495 CTTCCACAATCCCTAAGCTGAGACGTGAGTTCAGTTTATGTCGAGTCTACATAACAACAG 554 ||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||| Sbjct 480 CTTCCACAATCCCTAAGTTGAGACATGAATTCAGTTTATGTCGTGTCTACATAACAACAG 539 Query 555 GAAGCTCCAGAGCTTTTGATAGACGTCCTGAGGGAGTTTTGCAGACAGAGAGAATGCTAA 614 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 540 GAAGCTCCAGAGCTTTTGATAGACGTCCTGTGGAAGTTTTGCAGACAGAGAGAATGCTTA 599 Query 615 CAAGTGATGTTGCAGTAGCTGAGACATCGTTCCGTGTGGAAAGCTCA-CTGGAAACTTCG 673 ||||||||||||| || |||||||||||||| ||||| ||||||||| | |||||||||| Sbjct 600 CAAGTGATGTTGCGGTGGCTGAGACATCGTTTCGTGTCGAAAGCTCATC-GGAAACTTCG 658 Query 674 ATTTCAGGAGGAGAACATATTGATGTCTCTATGAACACAGAGTTTGTTGATGGACTATCA 733 ||||||||||||||| |||||||| ||||||||| |||||||| ||||||||| || || Sbjct 659 ATTTCAGGAGGAGAAAATATTGATCTCTCTATGAGTACAGAGTTGGTTGATGGATTAACA 718 Query 734 GAACCGATGTGGGACTGGGAACAGCTGACTTGGCCTTGAAGCTATATAGATTTTATAATC 793 ||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 719 GAACCAATCTGGGAATGGGAACAGCTGAGTTGGCCTTGAAGCTATATAGATTTTATAATG 778 Query 794 AAGCAAATTTAAACTTGTTTCAATTGCTTATTGTTAGTT 832 |||||||||||| ||||||||||||||||||||||||| Sbjct 779 AAGCAAATTTAAG-TTGTTTCAATTGCTTATTGTTAGTT 816 > Ahg897197 jgi|Araly1|897197|Al_scaffold_0005_1163 Length=699 Score = 250 bits (135), Expect = 1e-65 Identities = 317/403 (79%), Gaps = 19/403 (5%) Strand=Plus/Plus Query 86 GGGTTTCGCTTCTATCCCACGGAAGAAGAACTGGTTTCGT-TCTACCTACGAAACCAGCT 144 |||||||| |||||||| || |||| ||| || || ||| | |||||| ||| |||||| Sbjct 22 GGGTTTCGGTTCTATCCGACAGAAGTAGAGCTTCTTACGTAT-TACCTAAGAATCCAGCT 80 Query 145 CGAAGGAAGGAGTGATGACTCAATGCATC-GTGTCATTCCCG-TACTTGACGTCTTTGAG 202 | || |||| ||| | | || || | || ||| | ||| | || || || ||| || Sbjct 81 TGGTGG-AGGA--AATGCCACCATTCA-CAGTCTCA-TACCGATCCTCGATGTGTTT-AG 134 Query 203 -GTCGAGCCTA-GTCATCTTCCAAATGTTGCTGGAGTGAGATGTCGAGGAGACGCTGAGC 260 || ||||||| | || ||||||||| |||| |||| ||| |||||||||||||| || | Sbjct 135 CGTTGAGCCTACG-CAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGGAGACGCAGAAC 193 Query 261 AATGG-TTCTTCTTCGTGCCACGACAAGAACGCGAAGCAAGAGGAGGCAGACCGAGTAGA 319 ||||| || |||||||||||| ||||||| || ||||| |||||||| ||||||||||| Sbjct 194 AATGGCTT-TTCTTCGTGCCAAGACAAGAGCGGGAAGCTAGAGGAGGAAGACCGAGTAGG 252 Query 320 ACTACTGGTTCAGGATACTGGAAAGCAACTGGATCACCTGGTCCAGTCTTTTC-CAAAGA 378 || ||||||||||||||||||||||||||||| ||||| || || || || || | || Sbjct 253 ACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCAGGCCCCGTGTTCTCGCCG-GA 311 Query 379 CAACAAAATGATTGGAGCAAAGAAAACTATGGTTTTCTACACTGGAAAAGCACCCACAGG 438 ||| | |||| |||| ||||| || ||||||||||| || ||||||||||| || || Sbjct 312 TAACCGAGTGATCGGAGTTAAGAAGACGATGGTTTTCTATACCGGAAAAGCACCTACTGG 371 Query 439 AAGAAAAACTAAA-TGGAAAATGAATGAGTACCACGCCGTTGA 480 ||||| || ||| ||||| |||||||| ||| | || ||||| Sbjct 372 GAGAAAGAC-AAAGTGGAAGATGAATGAATACAAAGCAGTTGA 413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34081887798 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5