BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22390.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489095 jgi|Araly1|489095|fgenesh2_kg.6__2229__AT5G22390.1 1177 0.0
> Ahg489095 jgi|Araly1|489095|fgenesh2_kg.6__2229__AT5G22390.1
Length=864
Score = 1177 bits (637), Expect = 0.0
Identities = 809/885 (91%), Gaps = 39/885 (4%)
Strand=Plus/Plus
Query 259 ATGGCAGCTTATGGAAGCTTTCACCGAATATTCGATAACCCAAGACAAGACAACTCTCCA 318
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCCTATGGAAGCTTTCACCGAATATTCGATAACCCAAGACAAGACAACTCTCCA 60
Query 319 AAGTCGTTTCTTGATACTCTCTCCTCTTCTTCACCTTGGAACCCAAGCAAAGGCCTCCAC 378
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAGTCTTTTCTTGATACTCTCTCCTCTTCCTCACCTTGGAACCCAAGCAAAGGCCTCCAC 120
Query 379 GTCACAACCCACCACGACGAAACGCCACCGCCGTTTACAGAGATATTCGGTGAGCTTCAT 438
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GTCACCACCCACCACGACGAAACGCCGCCGCCGTTTACAGAGATATTCGGTGAGCTTCAT 180
Query 439 TTCAGAGAATCATCCCATTCTTCTTACGAGAAAACCTCAGCCGAGAACAGCAGTCTTCAG 498
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 181 TTCAGAGAATCATCCCATTCTTCTTACGAGAAAACCTCAGCGGAGAACAGCAGTCTCCAA 240
Query 499 CTGTGTACGGAAGGTCTAGGGTCAGAGAGTTATTACGGCTTGGAAGATGAAAAAGTCAAC 558
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CTGTGTACGGAAGGTTTAGGGTCAGAGAGTTATTACGACTTGGAAGATGAAAAAGTCAAC 300
Query 559 GGTGATG-----G-TGACGGTGATGAT---GATGA-GA--TT---GAAGTGAAGGGTAAA 603
| | ||| | | |||| || ||| ||||| || || |||||||||||||||
Sbjct 301 GTTAATGTCAACGGTAACGGGGAAGATCATGATGAAGAGATTATTGAAGTGAAGGGTAAA 360
Query 604 GATAACGGAAGCAACGATGAGGAGGAGTGGGAACCACGAAGGAAGGAACGGAAAGAGTAT 663
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GATAACGGAAGCAACGATGAGGAG---TGGGAACCACGAAGGAAGGAACGGAAAGAGTAT 417
Query 664 CCTCCGGCGATGACTAGGATGAGCTTCAAGACTTATAGAAAAGAAGGGAGGCTTGTGTTG 723
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 CCTCCGGCGATGACTAGGATGAGCTTCAAGACGTATAGAAAAGAAGGGAGGCTTGTGTTG 477
Query 724 GAAGAAGTTAGGATTCCAAGGAGAGAGTTCCTTCGTGCAAGCCGCGAAGATGGTCGACTC 783
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 478 GAAGAAGTTAGGATTCCGAGGAGAGAGTTTCTTCGAGCAAGCCGCGAAGATGGTCGACTC 537
Query 784 AGGTTGAAGTTGGTTCAACCTGAGGACGACCATGACGAAGAGGAAGAGAATGAGAAAGAT 843
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 538 AGGTTGAAGTTGGTTCAACCCGAGGACGACCATGACGAAGAGGAAGAAAATGAGAAAGAT 597
Query 844 AAACATGTCGACGAGGATGAATAATTTTGTGAATTTTCATAGAATTGTATCCGTTGTTCC 903
||||||| |||| ||||||||||||| | | | | |||| |||||||
Sbjct 598 AAACATG---ACGATGATGAATAATTTT-T---T-------G--T---ATCCATTGTTCC 638
Query 904 GCAAGATAAATGTCAATTATGAATGTAAAAGCTTCTTTATGCGGGTTTTGTAGTTGAATC 963
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 639 GCAAGAAAAATGTCAATTATGAATGTAAAAGCTTCTTTATGCGGGTTTTGTAGTTCAATC 698
Query 964 TAGCTCTTGTCGCTTAATCATTCTGCCGAGTTCttttttt-CATTTACAACTTCTCTACC 1022
|||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 699 AAGCTTTTGTCGCTTAACCATTCTGCCGAGTTTTTTTTTTTCATTTACAACTTCTCTACC 758
Query 1023 ATTCTATCAATGGGCAATGGCAAGGAAACTAATTTAGTTTTGAGTAAGATATAATTGGTT 1082
| |||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 759 AAACTATCAATGGTCAATGGCAAGGAAATTAATTTA-TTTTGAGTAAGATATATTTGGTT 817
Query 1083 TTGTTTAAAGATTTTGGAAAAACCTCTTTAAATATTAAAAGCCAA 1127
||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 818 TTGTTTAAAAAATTTGGAAAAATCTCTTTAAATATTAAAAGCCAA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5