BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22800.1 Length=3105 Score E Sequences producing significant alignments: (Bits) Value Ahg941792 jgi|Araly1|941792|scaffold_602336.1 4678 0.0 Ahg907425 jgi|Araly1|907425|Al_scaffold_0002_506 219 1e-55 > Ahg941792 jgi|Araly1|941792|scaffold_602336.1 Length=2979 Score = 4678 bits (2533), Expect = 0.0 Identities = 2830/2977 (95%), Gaps = 6/2977 (0%) Strand=Plus/Plus Query 4 CCTCCTC-ATACTCTCTGATGAATTTCTCCAGAGTAAACCTCTTCGATTTTCCTCTTAGA 62 ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCTCCTCAAAACTCTGTGATGAATTTCTCCAGAGTAAACCTCTTCGATTTTCCTCTTAGA 62 Query 63 CCAATTTTGCTTTCGCATCCTTCTTCTATTTTCGTTTCTACACGTTTTGTTACCAGAACC 122 || ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 63 CCGATTTTACTTTCGCATCCCTCTTCTATTTTCGTTTCTAAACGTTTTGTTACCAGAACC 122 Query 123 TCTGCAGGTGTTTCTCCTTCTATCTTACTTCCCAGATCAACTCAGTCTCCTCAGATTATT 182 ||||| | |||||||||||||| ||| ||||||| |||||||||||| ||||||||||| Sbjct 123 TCTGCTGCTGTTTCTCCTTCTACCTTGCTTCCCAAATCAACTCAGTCAGCTCAGATTATT 182 Query 183 GCTAAGAGCTCATCAGTATCAGTACAGCCAGTGTCTGAGGATGCTAAGGAGGATTATCAG 242 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 183 GCCAAGAGCTCATCAGTATCAGTACAGCCGGTGTCTGAGGATGCTAAGGAGGATTATCAG 242 Query 243 TCCAAAGATGTTAGTGGAGATTCAATACGGCGGCGTTTTCTTGAATTCTTTGCTTCTCGT 302 ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 243 TCCAAGGATGTTAGTGGAGATTCTATACGGCGGCGGTTTCTCGAATTCTTTGCCTCTCGT 302 Query 303 GGTCATAAGGTGCTTCCAAGTTCGTCTCTTGTACCAGAAGATCCTACCGTCTTGCTAACA 362 || |||||||||||||||||| |||||||||| |||||||||||||| ||| |||||||| Sbjct 303 GGGCATAAGGTGCTTCCAAGTGCGTCTCTTGTGCCAGAAGATCCTACTGTCCTGCTAACA 362 Query 363 ATTGCAGGAATGCTTCAGTTTAAGCCTATTTTCCTTGGAAAGGTACCTAGAGAGGTTCCT 422 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 363 ATTGCAGGAATGCTTCAGTTTAAGCCTATTTTCCTGGGAAAGGTACCTAGACAGGTTCCT 422 Query 423 TGTGCAACCACTGCGCAAAGGTGTATACGTACGAATGATTTGGAGAATGTTGGGAAAACG 482 |||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||| Sbjct 423 TGTGCAACCACTGCACAAAGGTGCATACGTACCAACGATTTGGAGAATGTTGGGAAAACG 482 Query 483 GCTAGGCACCATACTTTCTTTGAGATGCTTGGGAACTTTAGCTTTGGTGATTACTTCAAG 542 || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 GCCAGGCACCATACCTTCTTTGAGATGCTTGGGAACTTTAGCTTTGGTGATTACTTCAA- 541 Query 543 AAA-GAAGCGATAAAATGGGCATGGGAGCTTTCAACTATTGAGTTTGGGCTACCAGCTAA 601 ||| ||||| |||| ||||||||||||||| || ||||||||||||||| |||| ||||| Sbjct 542 AAAGGAAGCCATAAGATGGGCATGGGAGCTGTCGACTATTGAGTTTGGGTTACCTGCTAA 601 Query 602 TAGAGTTTGGGTTAGTATATATGAAGACGATGATGAAGCTTTTGAAATCTGGAAGAATGA 661 ||| ||||||||||| || || |||||||||||||||||||||||||||||||| ||||| Sbjct 602 TAGGGTTTGGGTTAGCATTTACGAAGACGATGATGAAGCTTTTGAAATCTGGAAAAATGA 661 Query 662 AGTTGGTGTTTCTGTTGAGCGGATAAAGAGAATGGGTGAAGCTGACAACTTTTGGACTAG 721 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 AGTTGGTGTGCCTGTTGAGCGGATAAAGAGAATGGGTGAAGCTGACAACTTTTGGACTAG 721 Query 722 TGGACCAACTGGTCCTTGTGGTCCATGCTCTGAGTTGTACTATGACTTCTATCCTGAGAG 781 |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 722 TGGACCAACTGGTCCTTGTGGTCCATGCTCAGAGTTATACTATGATTTCTATCCTGAGAG 781 Query 782 AGGTTATGATGAAGATGTTGATCTTGGGGATGATACCAGATTTATTGAGTTCTATAATTT 841 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 AGGTTCTGATGATGATGTTGATCTTGGGGATGATACCAGATTTATTGAGTTCTATAATTT 841 Query 842 GGTTTTCATGCAGTATAACAAGACGGAAGATGGATTGCTTGAGCCCTTGAAACAGAAGAA 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 GGTTTTCATGCAGTATAACAAGACGGAAGATGGATTGCTTGAGCCCTTGAAACAGAAGAA 901 Query 902 TATAGATACTGGTCTTGGTTTGGAACGTATAGCTCAAATCCTTCAGAAGGTTCCAAACAA 961 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 TATAGACACTGGTCTTGGTTTGGAACGTATAGCTCAAATCCTTCAGAAGGTTCCAAACAA 961 Query 962 CTACGAGACAGATTTGATATATCCAATCATTGCAAAGATCTCAGAGTTGGCGAATATCTC 1021 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 962 CTACGAGACAGATTTGATATATCCAATCATTGCGAAGATCTCAGAGTTGGCGAATATCTC 1021 Query 1022 ATATGACTCTGCAAATGACAAGGCAAAGACAAGTTTAAAAGTGATTGCAGATCACATGCG 1081 ||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1022 ATACGACTCTGCAAATGAAAAGGCAAAGACAAGTCTAAAAGTAATTGCAGATCACATGCG 1081 Query 1082 GGCAGTTGTCTATCTCATATCAGATGGTGTTTCTCCTTCAAATATTGGCAGAGGTTATGT 1141 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1082 GGCAGTTGTCTATCTCATATCAGACGGTGTTTCGCCTTCAAATATTGGCAGAGGTTATGT 1141 Query 1142 GGTTAGGAGGCTAATAAGAAGAGCAGTTCGGAAGGGGAAGTCTCTCGGAATAAATGGGGA 1201 || |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1142 AGTAAGGAGGCTTATAAGAAGGGCAGTTCGGAAGGGGAAGTCTCTCGGAATAAATGAGGA 1201 Query 1202 TATG-AATGGTAATCTAAAGGGAGCGTTTTTGCCAGCGGTTGCTGAAAAGGTGATAGAGT 1260 || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1202 TA-GAAATGGTAATCTAAAGGGAGCGTTTTTGCCAGCAGTTGCTGAAAAGGTGATAGAGT 1260 Query 1261 TGAGCACTTATATTGATTCAGATGTAAAACTAAAGGCCTCACGCATCATTGAGGAGATTA 1320 ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1261 TGAGCACCTATATTGATTCAGATGTAAAACTAAAGGCCCCACGAATCATTGAGGAGATTA 1320 Query 1321 GGCAAGAAGAACTTCACTTTAAGAAAACTCTGGAAAGAGGAGAAAAGTTACTTGACCAAA 1380 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GGCAAGAGGAACTTCACTTTAAGAAAACTCTGGAAAGAGGAGAAAAGTTACTTGACCAAA 1380 Query 1381 AGCTTAACGATGCATTGTCAATTGCTGATAAAACTAAGGATACGCCTTATCTGGATGGAA 1440 ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1381 AGCTTAACGATGCCCTGTCAATTGCTGATAAAACTAAGAATACGCCTTATCTGGATGGAA 1440 Query 1441 AAGATGCGTTTCTTCTTTATGACACATTTGGCTTTCCTGTGGAGATAACTGCAGAAGTTG 1500 |||||||||||||||| |||||||||| ||||| || ||||||||||| |||||||||| Sbjct 1441 AAGATGCGTTTCTTCTGTATGACACATACGGCTTCCCGGTGGAGATAACCGCAGAAGTTG 1500 Query 1501 CTGAAGAACGTGGAGTCAGTATAGATATGAATGGTTTTGAAGTGGAAATGGAGAATCAAA 1560 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1501 CTGAAGAACGTGGAGTCAGTATAGATATGAAAGGTTTTGAAGTAGAAATGGAGAATCAAA 1560 Query 1561 GACGTCAATCTCAAGCTGCTCACAATGTTGTAAAACTGACAGTTGAAGACGATGCTGACA 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1561 GACGTCAATCTCAAGCTGCTCACAATGTTGTAAAACTGACAGTTGAAGACGATGCTGATA 1620 Query 1621 TGACGAAAAATATTGCAGACACTGAGTTCCTTGGATATGACAGTCTCTCTGCTCGTGCTG 1680 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 TCACGAAAAATATTGCAGGCACTGAGTTCCTTGGATATGACAGTCTCTCTGCTCGTGCTG 1680 Query 1681 TTGTGAAAAGTCTTTTGGTGAATGGGAAGCCTGTGATAAGGGTTTCTGAAGGCAGTGAAG 1740 |||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||| Sbjct 1681 TTGTTAAAAGTCTTTTGGTGGATGGGAAGCCTGTGATAAAGGTGTCTGAAGGCAGTAAAG 1740 Query 1741 TAGAGGTTCTGCTGGACAGAACTCCGTTCTATGCTGAATCAGGAGGTCAAATTGCAGATC 1800 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1741 TAGAGATTCTGCTTGACAGAACTCCGTTCTATGCTGAATCAGGAGGTCAAATTGCAGATC 1800 Query 1801 ATGGTTTTCTTTATGTTAGCAGTGATGGGAACCAAGAGAAAGCTGTTGTTGAGGTAAGTG 1860 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1801 ATGGTTTTCTTTATGTTAACAGTGATGGGAACCAAGAGAATGCTGTTGTTGAGGTAAGTG 1860 Query 1861 ATGTGCAGAAGTCTCTTAAAATTTTTGTTCACAAGGGCACTGTAAAAAGTGGAGCTCTAG 1920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1861 ATGTGCAGAAGTCTCTTAAAATTTTTGTTCACAAGGGCACTGTAAAAAGTGGAGCTCTAG 1920 Query 1921 AAGTTGGCAAGGAGGTGGAAGCAGCAGTAGATGCAGACTTGAGGCAACGAGCGAAGGTTC 1980 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1921 AAGTTGGCAAAGAGGTGGAAGCAGCAGTAGATGCAGACAAGAGGCAACGAGCGAAGGTTC 1980 Query 1981 ACCATACCGCCACTCATTTGCTCCAATCGGCACTTAAAAAAGTAGTAGGACAAGAAACAT 2040 ||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1981 ACCATACAGCCACCCATTTGCTGCAATCGGCACTTAAGAAAGTAGTAGGACAAGAAACAT 2040 Query 2041 CACAGGCTGGTTCATTAGTAGCTTTTGACCGCCTCAGATTCGATTTCAATTTTAATCGGT 2100 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2041 CTCAGGCTGGTTCATTAGTAGCTTTTGACCGCCTGAGATTCGATTTCAATTTTAATCGGT 2100 Query 2101 CCCTGCATGATAATGAGCTTGAGGAAATCGAATGCCTGATCAATAGGTGGATTGGGGATG 2160 ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 2101 CCCTGCATGATAACGAGCTCAAGGAAATCGAATGCCTGATCAACAGGTGGATTGGGGATG 2160 Query 2161 CTACACGTCTTGAAACAAAAGTCCTTCCTCTTGCTGATGCAAAACGTGCTGGAGCCATCG 2220 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2161 CTACACGTCTTGAAACAAAAGTCCTTCCTCTTGCTGATGCAAAACGAGCTGGAGCCATCG 2220 Query 2221 CAATGTTTGGGGAAAAATATGATGAAAACGAGGTTCGTGTAGTAGAAGTTCCTGGTGTCT 2280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2221 CAATGTTTGGGGAAAAATATGATGAAAACGAGGTTCGTGTAGTAGAAGTTCCTGGTGTCT 2280 Query 2281 CCATGGAACTTTGTGGTGGCACTCATGTTGGCAATACTGCAGAAATACGAGCCTTCAAGA 2340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2281 CCATGGAACTTTGTGGTGGCACTCATGTTGGCAATACTGCAGAAATACGAGCCTTCAAAA 2340 Query 2341 TTATCTCAGAACAGGGCATTGCATCTGGAATCCGGCGTATAGAAGCGGTTGCAGGTGAAG 2400 || ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 2341 TTCTCTCAGAACAGGGCATTGCATCTGGAATCAGGCGTATCGAAGCGGTTGCGGGTGAAG 2400 Query 2401 CATTCATTGAATACATAAACTCACGGGATTCTCAAATGACACGTCTATGCTCGACTCTCA 2460 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2401 CATTCATTGAATACATAAACTCACAGGATTCTCAAATGACACGTCTATGCTCGACTCTCA 2460 Query 2461 AGGTGAAAGCAGAGGATGTTACAAACAGAGTGGAGAATCTTCTAGAGGAACTACGTGCTG 2520 |||||||||||||| | |||| | | | ||||||||| |||||| ||||||| ||||| | Sbjct 2461 AGGTGAAAGCAGAGAAGGTTATAGAGACAGTGGAGAAACTTCTAAAGGAACTGCGTGCAG 2520 Query 2521 CTAGAAAAGAAGCCTCCGACTTGCGTTCAAAAGCAGCTGTCTATAAAGCATCTGTCATAT 2580 ||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 2521 CTAAAAAAGAAGCCTCTGACTTGCGTTCAAAAGCAGCGGTCTATAAAGCATCTGTCATAT 2580 Query 2581 CGAACAAAGCATTTACTGTAGGAACTTCACAGACTATAAGAGTGCTCGTTGAGTCGATGG 2640 |||| || |||||||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 2581 CGAAGAATGCATTTACTGTAGGAACTTCACAGACGATAAGAGTGCTTGTCGAGTCTATGG 2640 Query 2641 ATGACACCGATGCTGACTCATTAAAGAGTGCAGCTGAGCATTTGATAAGCACATTGGAAG 2700 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 2641 ATGACACCGATGCTGACTCATTAAAGAGTGCAGCTGAGCATTTGATAACCACGTTGGAAG 2700 Query 2701 ATCCAGTCGCTGTGGTACTAGGATCATCTCCAGAAAAAGACAAGGTTAGTTTAGTTGCTG 2760 ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 2701 ATCCAGTGGCTGTGGTATTAGGATCATCTCCAGAGAAAGACAAGGTTAGTTTAGTTGCTG 2760 Query 2761 CATTTAGTCCTGGAGTAGTCTCCCTAGGTGTTCAAGCAGGGAAATTCATTGGCCCCATAG 2820 |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 2761 CATTTAGTCCAGGAGTAGTCTCTCTAGGAGTTCAAGCAGGGAAATTCATTGGCCCCATAG 2820 Query 2821 CTAAGCTGTGTGGCGGAGGAGGTGGTGGAAAGCCCAATTTTGCTCAGGCAGGCGGCAGAA 2880 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2821 CTAAGCTGTGTGGTGGAGGAGGTGGTGGAAAACCCAATTTTGCTCAGGCAGGCGGCAGAA 2880 Query 2881 AGCCTGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACTCTAT 2940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2881 AGCCTGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACTCTAT 2940 Query 2941 CCGAAAAGCTAGGGTGAAGCACAAACTTCAAAAGTGA 2977 |||||||||||||||||||||||| |||||||||||| Sbjct 2941 CCGAAAAGCTAGGGTGAAGCACAA-CTTCAAAAGTGA 2976 > Ahg907425 jgi|Araly1|907425|Al_scaffold_0002_506 Length=216 Score = 219 bits (118), Expect = 1e-55 Identities = 128/133 (96%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 2825 GCTGTGTGGCGGAGGAGGTGGTGGAAAGCCCAATTTTGCTCAGGCAGGCGGCAGAAAGCC 2884 ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 84 GCTATGTGGCGGAGGAGGTGGTGGAAAACCCAGTTTTGCTCAGGCAGGCGGCAGAAAGCC 143 Query 2885 TGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACTCTATCCGA 2944 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 144 TGGAAATCTCCCAAGTGCCTTAGCGAAAGCTCGGGAAGATCTCGTGGCAACTCTATCCGA 203 Query 2945 AAAGCTAGGGTGA 2957 ||||||||||||| Sbjct 204 AAAGCTAGGGTGA 216 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117279864355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5