BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22830.1 Length=1736 Score E Sequences producing significant alignments: (Bits) Value Ahg489136 jgi|Araly1|489136|fgenesh2_kg.6__2270__AT5G22830.1 2342 0.0 > Ahg489136 jgi|Araly1|489136|fgenesh2_kg.6__2270__AT5G22830.1 Length=1475 Score = 2342 bits (1268), Expect = 0.0 Identities = 1419/1490 (95%), Gaps = 17/1490 (1%) Strand=Plus/Plus Query 3 TTTTTTGGTAAAATTATCCTTAAAGCTAAAAATCTCCATAACCAAAGCTTCTTCGTTCCA 62 |||||| |||||||||||| | ||||||||| ||||||||||||||||||| | ||||| Sbjct 1 TTTTTTTGTAAAATTATCC-TCAAGCTAAAATTCTCCATAACCAAAGCTTC--C-TTCCA 56 Query 63 CCAGCACCAAACCAACAATGGCGTTAACTCCAATTCCTTCAACATTCActtctctcttca 122 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 57 CCAGCACCAAACCAACAATGGCGTTAACTCCAATTCCTTCAACATTCACTTCACTCATCA 116 Query 123 act-tctccgatcactctccatatccatctccatctctccattatcttcttcctggatct 181 | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 A-TATCTCCGATCATTCTCCATATCCATCTCCATCTCTCCATTATCTTCTTCCTGGATCT 175 Query 182 tctccttccttttctctccagttatctGCGT-TGAGTAGAACTCCGATCTACTTCGAGGC 240 |||||||||||||||||||| ||||| || | ||||||||||||||||||| |||||||| Sbjct 176 TCTCCTTCCTTTTCTCTCCACTTATCGGC-TCTGAGTAGAACTCCGATCTATTTCGAGGC 234 Query 241 ACTTAAAGTTTTATCGAGATCGAAATGTTTCGCCAAGTCTCCGACAACCGCCGAGGATTT 300 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 235 ACTTAAAGTTTTATCGAGATCGAAATGTTTCGCCAAGTCTCCCACAACTGCCGAGGATTT 294 Query 301 CGTCGGCGATTACGAATCCCTTAACGTTAGCGACGACGACGATGGTAGTGACAGTAATAG 360 |||||| ||||||||| |||| ||||||| | |||||| |||||||||||||||||||| Sbjct 295 CGTCGGAGATTACGAAACCCTAAACGTTA--G-CGACGATGATGGTAGTGACAGTAATAG 351 Query 361 TAGTGATGGAGATAACGGAGGAGGAAGAGATGATTCAAAGAAGATCGAttcttcttcttc 420 |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 352 TAGTGATGGAGATAAC---GGAGGAAGAGAGGATTTAAAGAAGATCGATTCTTCTTCTTC 408 Query 421 ttcttcATCAAGTGACTCTACGTCTCTGGGAATTCGTGAACCGGTTTATGAGGTTGTGGA 480 ||| | |||||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct 409 TTC-T--TCAAGTGATTCTACATCGCTAGGAATTCGTGAACCGGTTTATGAGGTTGTGGA 465 Query 481 AGTGAAGGCGACTGGAGCAATATCTACAAGGAAGATTAACAGACGACAGCTGCTTAAATC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 466 AGTGAAGGCGACTGGAGCAATATCTACAAGGAAGATTAACAGACGACAGCTGCTCAAATC 525 Query 541 CAGTGGTCTTCGTCCAAGAGATATACGAAGCGTTGATCCTTCGTTGTTTATGACAAACTC 600 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 526 CAGTGGTCTTCGTCCGAGAGATATCCGAAGCGTTGATCCTTCGTTGTTTATGACAAACTC 585 Query 601 AGTGCCATCTCTATTGGTCCGTGAACATGCGATTCTGCTAAATTTGGGCTCCCTGAGAGC 660 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 586 AGTGCCATCTTTATTGGTCCGTGAACATGCGATTTTGCTAAATTTGGGCTCCCTGAGAGC 645 Query 661 AATAGCCATGCGAGACCGTGTCCTTATATTTGATTATAACCGGAGAGGAGGAAGAGCTTT 720 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 AATAGCAATGCGAGACCGTGTCCTTATATTTGATTATAACCGGAGAGGAGGAAGAGCTTT 705 Query 721 TGTAGATACATTGATGCCTCGGCTTAACCCAAGAAGTATGAATGGAGGACCCTCTATGCC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 TGTAGATACATTGATGCCTCGGCTTAACCCAAGAAGTATGAATGGAGGACCCTCTATGCC 765 Query 781 ATTTGAACTAGAGGCTGTTGAATCGGCGCTAATCTCAAGGATACAACGATTAGAGCAAAG 840 ||||||| |||||| ||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 766 ATTTGAATTAGAGGTTGTTGAATCAGCGCTTATATCAAGGATACAACGATTAGAGCAAAG 825 Query 841 GCTTATGGACATTGAACCCCGTGTCCAAGCTCTACTTGAGGTTTTACCCAACCGCTTAAC 900 ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 826 GCTTATGGACATTGAACCCCGTGTCCAAGCTCTTCTTGAAGTTTTGCCCAATCGCTTAAC 885 Query 901 TGCCGATATATTGGAGGAACTTCGTATTAGCAAACAAAGACTGGTTGAATTGGGCTCCCG 960 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 886 TGCTGATATATTGGAGGAACTTCGTATTAGCAAACAAAGACTGGTTGAATTGGGCTCCAG 945 Query 961 AGCTGGAGCTCTTAGACAAATGCTCCTGGATCTTTTAGAGGATCCCCATGAAATACGCCG 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 946 AGCTGGAGCTCTTAGACAAATGCTCCTGGATCTTTTAGAGGATCCCCATGAAATACGCCG 1005 Query 1021 CATATGCATCATGGGAAGAAATTGCACACTTAGAAGAGGAGACGATGATTTGGAGTGTAC 1080 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1006 CATATGCATCATGGGAAGAAATTGCACTCTTAGAAGAGGAGACGATGATTTGGAGTGTAC 1065 Query 1081 ATTACCCTCAGATAAGCTGATTGCTGAGGAAGAAGAGGAGGAAATCGAAATGCTCTTGGA 1140 ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1066 GTTACCCTCAGACAAGCTGATTGCCGAGGAAGAAGAGGAGGAAATTGAAATGCTCTTGGA 1125 Query 1141 GAACTATCTGCAAAGATGTGAGTCATGCCATGGACAAGCAGAAAGACTTCTGGATTCTGC 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1126 GAACTATCTGCAAAGATGTGAGTCATGCCATGGACAAGCAGAAAGACTTCTGGATTCTGC 1185 Query 1201 AAAGGAAATGGAAGACTCAATTGCTGTCAATCTAAGTTCTCGGAGGCTTGAGGTCAGCAG 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1186 AAAGGAAATGGAAGACTCAATTGCTGTCAATCTAAGTTCTCGGAGGCTTGAGGTCAGCAG 1245 Query 1261 GTTCGAGTTGCTTCTTCAGGTCGGTACATTTTGTGTTGCAGTTGGTGCTCTCATCGCAGG 1320 |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1246 ATTCGAGCTGCTTCTTCAGGTCGGTACATTCTGTGTTGCAGTTGGTGCTCTCATCGCAGG 1305 Query 1321 TATATTCGGCATGAACTTGAGGTCCTATCTTGAAGAACAAGCTTCTGCATTCTGGCTAAC 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1306 TATATTCGGCATGAACTTGAGGTCCTATCTTGAAGAACAAGCTTCTGCATTCTGGCTAAC 1365 Query 1381 AACGGGTGGAATCATCATAGGCGCTGCAGTCGCCTTCTTTCTCATGTATTCCTATCTCAG 1440 ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 1366 AACAGGTGGAATCATCATAGGCGCTGCAGTCGGCTTCTTCCTCATGTATTCCTATCTCAG 1425 Query 1441 TAGACGCAAAATCTTTTGAACCTTCAATCCTAAAAGACGAAAGAAGAGGT 1490 |||||| |||||||| ||||||||||||||||||||| | || ||||||| Sbjct 1426 TAGACGAAAAATCTTCTGAACCTTCAATCCTAAAAGATGGAACAAGAGGT 1475 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65134318950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5