BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23060.1 Length=1457 Score E Sequences producing significant alignments: (Bits) Value Ahg489159 jgi|Araly1|489159|fgenesh2_kg.6__2293__AT5G23060.1 1982 0.0 > Ahg489159 jgi|Araly1|489159|fgenesh2_kg.6__2293__AT5G23060.1 Length=1335 Score = 1982 bits (1073), Expect = 0.0 Identities = 1241/1320 (94%), Gaps = 19/1320 (1%) Strand=Plus/Plus Query 23 TGAAGAAACAGTTTGCAGACAACATTGAAGAGAAG-CTCTAAAGATTCTTTGTCTCTTTC 81 ||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| Sbjct 1 TGAAGAAACAGTTTGCAGACAACATTGAAGAGAAGAAT-TAGAGATTCTTTGTCTCTTTC 59 Query 82 TCTGTCGCATTGATTTGTAAAAAAGTGTGGCAGAGAGAAACCATGGCTATGGCGGAAATG 141 ||||||||||||||| | |||||||||||||||| | ||| ||||||| ||||||| ||| Sbjct 60 TCTGTCGCATTGATTCG-AAAAAAGTGTGGCAGA-AAAAAACATGGCTTTGGCGGAGATG 117 Query 142 GCAACGAAGTCTTCACTATCTGCAAAACTCACTCTTCCTTCTTCTTCTACTAAGAAGACA 201 || | ||||||||||||||||||||||||||||||||||||||||||| | |||||| | Sbjct 118 GCTATGAAGTCTTCACTATCTGCAAAACTCACTCTTCCTTCTTCTTCTTCCAAGAAG--A 175 Query 202 CTGAGTCTGAGACAAGTCTCTGTTTCACTTCCAACATCAACTTCAATCTCTCTGTTATCT 261 | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 C--A--CTGAGACAAATCTCTGTTTCACTTCCAACATCAACTTCAATCTCTCTGTTATCT 231 Query 262 CTCTTTGCATCTCCTCCTCATGAAGCTAAAGCTGCTGTTTCCATTCCCAAGGACCAAATC 321 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 232 CTCTTTGCATCTCCTCCTCATGAAGCTAAAGCTGCTGTTTCCATTTCCAAGGACCAAATC 291 Query 322 GTCTCCTCTCTCACTGAAGTGGAGAAAACAATCAACCAAGTTCAAGAAACTGGTTCTAGT 381 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 292 GTCTCCTCTATCACTGAAGTGGAGAAAACAATCAATCAAGTTCAAGAAACTGGTTCTAGT 351 Query 382 GTATTTGATGCAACGCAGCGTGTGTTCCAAGTAGTAGGAGATGCTCTTAAACCAGCTTTG 441 || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 352 GTTTTTGATGCAACTCAGCGTGTGTTCCAAGTAGTAGGAGATGCTCTGAAACCAGCTTTG 411 Query 442 GACACTGCTTTACCCATT-GCAAAGCAAGCTGGTGAAGAAGCTATGAAGCTTGCTTCTCC 500 |||||||||||||| | | |||||||||||||||||||||||||| |||||||||||||| Sbjct 412 GACACTGCTTTACC-ACTCGCAAAGCAAGCTGGTGAAGAAGCTATAAAGCTTGCTTCTCC 470 Query 501 TGCTTTCTCTGAAGCTTCAAAGAAAGCTCAAGAAGCAATGCAGAGCTCTGGTTTTGATTC 560 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 TGCTTTCTCAGAAGCTTCAAAGAAAGCTCAAGAAGCAATGCAGAGCTCTGGTTTTGATTC 530 Query 561 TGAGCCTGTCTTTAATGCTGCAAAGACAGTAACAGATGTAGCACAACAGACGTCAAAAGC 620 ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 531 AGAGCCTGTCTTTAATGCTGCAAAGACAGTAACAGATGTAGCTCAACAGACGACAAAAGC 590 Query 621 GATAGAAGATGCTAAACCGATTGCTTCATCGACCATGGATACGATTTCTTCAGCTGACCC 680 ||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| || Sbjct 591 GATAGAAGATGCTAAGCCGATTGCTTCGTCGACCATTGAGACGATTTCTTCAGCTGATCC 650 Query 681 TAGTGTCATTGTTGTTGCTGCTGGTGCTGCGTTTCTTGCTTACCTTCTTCTCCCTCCTGT 740 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 TAATGTCATTGTTGTTGCTGCTGGTGCTGCGTTTCTTGCTTACCTTCTTCTCCCTCCTGT 710 Query 741 TTTCTCTGCCATCTCTTTTAACTTCCGTGGTTACAAAGGTGATCTTACGCCGGCTCAAAC 800 || |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 711 TTGGTCTGCCATTTCTTTTAACTTCCGTGGATACAAAGGTGATCTCACGCCGGCTCAAAC 770 Query 801 GCTTGACCTTCTTTGCACCAAGAACTACTTGATGGTGGATATAAGATCAGAGAAAGACAA 860 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 771 GCTTGATCTTCTTTGCACCAAGAACTACTTGATGGTAGATATAAGATCAGAGAAAGACAA 830 Query 861 GGAGAAAGCCGGGATTCCACGGCTCCCTTCGAATGCTAAGAACCGCGTGATCTCCATTCC 920 |||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| Sbjct 831 GGAGAAAGCCGGGATTCCACGGCTCCCTTCAAATGCTAAGAACCGTGTGATCGCCATTCC 890 Query 921 ATTAGAAGAACTACCAAACAAAGTAAAAGGAATCGTGAGGAACTCTAAACGAGTTGAAGC 980 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 891 ATTAGAAGAACTACCGAACAAAGTAAAAGGAATTGTGAGGAACTCGAAACGGGTTGAAGC 950 Query 981 AGAGATAGCAGCATTAAAGATTTCTTACCTCAAGAAAATCAACAAAGGCTCCAATATCAT 1040 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 951 AGAGATAGCAGCATTAAAGATTTCTTACCTCAAGAGAATCAACAAAGGCTCCAATATCAT 1010 Query 1041 CATCTTGGACTCGTACACGGATTCGGCTAAGATAGTGGCGAAAACGTTAAAGGTTCTCGG 1100 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1011 CATCTTGGACTCGTACTCGGATTCGGCTAAAATAGTGGCGAAAACGTTAAAGGTTCTCGG 1070 Query 1101 GTACAAGAATTGCTATATTGTGACAGATGGATTCTCTGGTGGCAGAGGATGGTTGCAGAG 1160 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1071 GTTCAAGAATTGTTATATTGTGACAGATGGATTCTCTGGTGGCAGAGGATGGTTGCAGAG 1130 Query 1161 CCGTTTAGGCACTGATTCTTACAACTTCTCGTTTGCACAAGTCTTGTCTCCATCGCGGAT 1220 ||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct 1131 CCGGTTAGGCACTGATTCTTACAACTTCTCGTTCGCGCAAGTCTTGTCTCCATCGCGTAT 1190 Query 1221 TATCCCGGCAGCTTCGAGAAGCTTTGGCACTAGGTCCGGAACCAAGTTCCTTCCTAGCTC 1280 ||||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct 1191 TATCCCGGCAGCTTCTAGAAGTTTTGGCACTAGATCCGGAACCAAGCTCCTTCCTAGCTC 1250 Query 1281 CGACTGAAAA-CA-GAGGATA-TATATA-GTTTTACAAGTGTTGTTT-AGTATTCC-TTT 1334 ||| |||||| || ||||||| |||||| | |||| ||||||||||| | |||||| ||| Sbjct 1251 CGAGTGAAAAACAAGAGGATACTATATATGGTTTAAAAGTGTTGTTTTA-TATTCCCTTT 1309 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54507140595 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5