BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23100.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941831 jgi|Araly1|941831|scaffold_602375.1 1232 0.0
> Ahg941831 jgi|Araly1|941831|scaffold_602375.1
Length=877
Score = 1232 bits (667), Expect = 0.0
Identities = 791/847 (93%), Gaps = 23/847 (3%)
Strand=Plus/Plus
Query 133 GACTTTGCCTCCAAGAGACACAATAGTTTCCACTGGACAAGAAAAGTCGGATCAGACGAA 192
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 GACTTTACCTCCAAGAGACACAATAGTTTCCACTGGACAAGAAAAGTCGGATCAGACGAA 104
Query 193 AACGACGACGTTTCTTCTCATAAACCTCTTCCTCATCACAAC-AACACTAAACCTTCTTC 251
||||||||||||||||| |||||||||||||||||| || || || || | | |||||||
Sbjct 105 AACGACGACGTTTCTTCCCATAAACCTCTTCCTCATAAC-ACTAA-AC-ACA-CTTCTTC 160
Query 252 TTCTTCATCTTCATCTTCCTCTAATGTAATCACTCACaaaaaaaaGCTTCAATCTTTCGC 311
|||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 161 TTCTTCATCTTCATCTTCTTCTAATGTAATCACTCCCAAACGAAAGCTTCAATCTTTCGC 220
Query 312 CGTTTCTCGTCTCCGGTCAGTTATCGCTACTCTAAGCAGAGCACGACCCGGTAACCAAAA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 221 CGTTTCTCGTCTCCGGTCAGTTATCGCTACTCTAAGCAGAGCACGACCCGGTAACCACAA 280
Query 372 CTCCGGGCTCGGGTCACGGGTCGTGGGTACACTTTTCGGGTCTCGTCGTGGTCACGTGCA 431
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 281 CTCCGGACTCGGGTCACGGGTCGTGGGTACACTTTTCGGATCTCGTCGCGGTCACGTGCA 340
Query 432 TTTCTCTATCCAGAAAGATCCTAATTCTCCACCGGCGTTTTTAATCGAACTCGCTACTCC 491
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TTTCTCAATCCAGAAAGATCCTAATTCTCCACCGGCGTTTTTAATCGAACTCGCTACTCC 400
Query 492 GATTAGTGGGTTAGTCAAAGAAATGGCTTCAGGACTCGTTAGAATCGCTTTGGAGTGTGA 551
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 401 GATTAGTGGGTTAGTTAAAGAGATGGCTTCAGGACTCGTTAGAATCGCTTTGGAGTGTGA 460
Query 552 TAAGGGGAAAGAGGAAGAAGAAGGAGAAGaaaaaaaCGGAACTTTACGTCACGGCGGAGG 611
|||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 461 TAAGGGTAAAGAGGAAGTAGAAGGAGATGAAAAAAACGGAACTTTACGTCACGGCGGAGG 520
Query 612 AGACAAGACGAAGACGACGACGACGGCGGCGGTTTCACGGCGGTTGGTGGAGGAGCCGAT 671
||||||||||| || | || | ||| ||||||||||||||||||| ||||||||
Sbjct 521 AGACAAGACGA---CG--G-CG--G-CGG---TTTCACGGCGGTTGGTGGAAGAGCCGAT 568
Query 672 GTGGAGAACTTATTGTAACGGGAAAAAGTGTGGATTTGCTACGAGGAGAGAGTGTGGTGA 731
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 569 GTGGAGGACTTATTGTAACGGGAAAAAGTGTGGATTTGCGACGAGGAGAGAGTGTGGTGA 628
Query 732 GAAGGAGAAAAAGGTTTTGAAAGCTCTTGAGATGGTTTCAATGGGCGCCGGAGTCTTACC 791
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 629 GAAGGAGAAAAAGGTTTTGAAAGCTCTTGAGATGGTTTCTATGGGCGCCGGAGTTTTACC 688
Query 792 AGAGACGGAGGAGATAGGCGGTGGTGGCGGCGGCGGAGGAG-A--TATAATGTATATGAG 848
||||||||||||| || ||| || |||||||||||||||| | |||||||||||||||
Sbjct 689 GGAGACGGAGGAGACAGACGGCGGCGGCGGCGGCGGAGGAGGAGATATAATGTATATGAG 748
Query 849 GGCGAAATTCGAGAGAATTGTTGGGTCGCGTGATTCAGAAGCCTTCTACATGATGAATCC 908
||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 749 GGCGAAATTTGAGAGGATTGTTGGGTCGCGTGATTCAGAAGCTTTCTATATGATGAATCC 808
Query 909 TGATAGTAATGGAGCTCCTGAGCTTAGTATCTATCTACTCAGAATCTGATGAACAAGACG 968
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 809 TGATAGTAATGGAGCTCCTGAGCTTAGTATCTATCTACTCAGAATCTGAAGAA---GACG 865
Query 969 ATGATCG 975
|||||||
Sbjct 866 ATGATCG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5