BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23120.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489169 jgi|Araly1|489169|fgenesh2_kg.6__2303__AT5G23120.1 1742 0.0
> Ahg489169 jgi|Araly1|489169|fgenesh2_kg.6__2303__AT5G23120.1
Length=1319
Score = 1742 bits (943), Expect = 0.0
Identities = 1141/1231 (93%), Gaps = 36/1231 (3%)
Strand=Plus/Plus
Query 28 ACATCAATGGCGTCTCTGCAACTCTGCGACGGTTATCTTCTCTTCAAGCCCTCTGTTTCT 87
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACATCAATGGCGTCTCTGCAACTCTGCGACGGTTATCTTCTCTTCAAGCCCTCTG----- 55
Query 88 CCTCGATTCCTCTCTCAACGCATTTCTCATCGCCTAATCCCTAAAGCCTCATCTTCTCCT 147
| || ||| |||||||||| ||||| ||||| |||||||||| | | || | ||
Sbjct 56 --T---TT-CTC-CTCAACGCATCTCTCACCGCCTCATCCCTAAAG-C-C-TC--C-GCT 102
Query 148 CCTCCATCTCCATCACCATCATCGTCCTCTTCATCCTTATCTTTCAGTCGGCGGGAGCTT 207
| || || | | || | || ||||| |||||||||||||||||||||||||||
Sbjct 103 --T-CA---CCGT---CGTC-T--TCTTCTTCCTCCTTATCTTTCAGTCGGCGGGAGCTT 150
Query 208 CTGTACCAATCGGCAGCTGTATCACTCTCGCTTTCTT---CCATTGTTGGACCAGCGAGA 264
|| ||||||||||| |||||||||||||| | || || ||| || | ||||| |
Sbjct 151 CTATACCAATCGGCGGCTGTATCACTCTC-CATTGTTGGACCA--GTAAAAGAAGCGAAA 207
Query 265 GCTGATGAACAGTTATCCGAATGGGAAAGAGTGTTTCTCCCAATCGATCCCGGTGTTGTT 324
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GCTGATGAACAGTTATCAGAATGGGAAAGAGTGTTTCTCCCAATCGATCCCGGTGTTGTT 267
Query 325 CTTCTCGACATTGCTTTCGTCCCCGACGAACCTAGCCGAGGGTTTTTACTTGGAACGAGA 384
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 268 CTTCTCGACATTGCTTTCGTCCCCGACGAACCTAGCCGCGGGTTTTTACTGGGAACGAGA 327
Query 385 CAGACTTTGTTAGAGACTAAAGATGGTGGAAGCACTTGGAATCCACGTTCGATTCCTTCA 444
|||||| | |||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 328 CAGACTCTATTAGAGACTAAAGACGGTGGAAACACTTGGAATCCACGCTCGATTCCTTCA 387
Query 445 GCTGAAGAAGAAGATTTCAATTATAGATTCAATTCGATTAGCTTTAAAGGCAAAGAAGGA 504
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 388 GCTGAAGAGGAAGATTTCAATTATAGATTCAATTCGATTAGCTTTAAAGGCAAACAAGGA 447
Query 505 TGGATTATTGGCAAACCTGCGATTTTATTGTACACTGCTGATGCTGGAGAGAATTGGGAT 564
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 448 TGGATTATTGGCAAGCCTGCAATTTTGTTGTACACTGCTGATGCTGGAGAGAATTGGGAT 507
Query 565 AGGATTCCTCTAAGTTCTCAGCTTCCTGGAGATATGGTGTTTATAAAAGCGACAGAAGAT 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 508 CGGATTCCTCTAAGTTCTCAGCTTCCTGGAGATATGGTGTTTATAAAAGCGACAGGAGAT 567
Query 625 AAGAGTGCAGAGATGGTTACTGATGAAGGTGCTATTTATGTTACTTCAAACAGGGGATAT 684
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 568 AAGAGCGCAGAGATGGTTACTGATGAAGGTGCTATTTATGTTACTTCAAACAAGGGATAT 627
Query 685 AACTGGAAAGCTGCTATTCAGGAAACTGTTTCAGCTACCTTGAACAGAACAGTATCCAGT 744
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 628 AACTGGAAAGCTGCTATTCAGGAAACTGTTTCAGCTACCTTGAACAGAACGGTATCTAGT 687
Query 745 GGAATCAGTGGTGCTAGTTACTACACGGGAACTTTCAGTGCTGTTAATCGTTCACCTGAT 804
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 688 GGAATCAGTGGTGCTAGTTACTACACGGGAACCTTCAGTGCCGTTAATCGTTCACCTGAC 747
Query 805 GGAAGATATGTCGCTGTTTCGAGCCGTGGTAACTTCTTTCTGACATGGGAGCCTGGGCAG 864
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 748 GGAAGATATGTCGCTGTTTCCAGCCGTGGTAACTTCTTTCTGACATGGGAGCCTGGGCAG 807
Query 865 CCTTACTGGCAACCACACAATAGAGCTGTTGCTAGAAGAATTCAGAACATGGGATGGAGA 924
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 808 CCTTACTGGCAACCACACAATAGAGCTGTTGCCCGAAGAATTCAGAACATGGGATGGAGA 867
Query 925 GCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGTGGAGGACTTTATCTTAGCAAAGGTACT 984
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 868 GCTGATGGTGGTCTGTGGCTTCTTGTTCGTGGTGGAGGACTTTATCTTAGCAAAGGCACT 927
Query 985 GGGATTACAGAGGAGTTTGAAGAAGTTCCAGTACAAAGCCGTGGCTTTGGCATTCTAGAT 1044
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GGGATCACAGAGGATTTTGAAGAAGTTCCAGTACAAAGCCGTGGCTTTGGCATTCTAGAT 987
Query 1045 GTTGGATATCGCTCAGAGGAAGAAGCATGGGCAGCAGGAGGCAGTGGCATACTACTGAGA 1104
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 988 GTTGGATATCGCTCAGAGGAAGAAGCATGGGCAGCAGGAGGCAGTGGAATACTACTGAGA 1047
Query 1105 ACAAGAAATGGAGGCAAATCATGGAACCGTGACAAAGCTGCTGATAATATCGCAGCTAAC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 ACAAGAAATGGAGGCAAATCATGGAACCGTGACAAAGCTGCTGATAATATCGCAGCTAAC 1107
Query 1165 CTATACGCAGTCAAATTTGTGGATGACAAGAAAGGATTTGTGCTTGGCAACGATGGAGTC 1224
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1108 CTCTACGCAGTCAAATTTGTGGATGACAAGAAAGGGTTTGTGCTTGGCAACGATGGAGTC 1167
Query 1225 TTGCTCCGATATGTTGGCTGAAGAATTTaaa 1255
||||||||||| ||||| |||| |||| |||
Sbjct 1168 TTGCTCCGATACGTTGGATGAAAAATTGAAA 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5