BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23210.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489176 jgi|Araly1|489176|fgenesh2_kg.6__2310__AT5G23210.1 2881 0.0
Ahg941844 jgi|Araly1|941844|scaffold_602388.1 610 1e-173
> Ahg489176 jgi|Araly1|489176|fgenesh2_kg.6__2310__AT5G23210.1
Length=1839
Score = 2881 bits (1560), Expect = 0.0
Identities = 1754/1846 (95%), Gaps = 19/1846 (1%)
Strand=Plus/Plus
Query 22 TTTTCCAGAATTTGATTTTTCTCATGTGTCTTATCTTATGAATATGGTTACCACCCAGTG 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCCAGAATTTGATTTTTCTCATGTGTCTTATCTTATGAATATGGTTACCACCCAGTG 60
Query 82 AGACTACAGAGTGTTCTTATCTGTCTCTGAATCCCATTCTCTCTCTCACAC-A-ACATTA 139
|||||||||||||||||||||||||||||||| |||||||||||||| | | | ||||||
Sbjct 61 AGACTACAGAGTGTTCTTATCTGTCTCTGAAT-CCATTCTCTCTCTCTCTCAACACATTA 119
Query 140 TATAAGCTTACACAGTCACTTCACAATTTCCACAAATTCGA-TATATTAAACTATAATAA 198
||||| |||||||||||||||||||||||| |||||||||| | ||||||| ||||||||
Sbjct 120 TATAAACTTACACAGTCACTTCACAATTTCTACAAATTCGATTTTATTAAATTATAATAA 179
Query 199 ACTAAAAAGAAATGGGTTCTCATAGTGTTGAGTTCTCTGTTCTTGTCCTATTTCTTGTGT 258
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AATAAAAAGAAATGGGTTCTCATAGTTTTGAGTTCTCTGTTCTTGTCCTATTTCTTGTGT 239
Query 259 CCTTTCTTCTTGGCTCAACATCAGCAGAAAAGCTGTGCAGTGACAACGACGGCGACAACG 318
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCTTTCTTCTTGGCTCATCATCAGCAGAAAAGCTGTGCAGTGACAACGACGGCGACAACG 299
Query 319 GTTGTTTCCGGTCTAGGGTTTTGGCAGCGCAACGAGCTGATCGAGTGAAAGAGCTTCCGG 378
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 300 GTTGTTTCCGGTCTAGGGTTTTGTCGGCGCAACGAGCTGATCGAGTGAAGGAGCTTCCGG 359
Query 379 GACAGCCGCCAGTGAAATTCCGGCAATACGCCGGTTATGTGACGGTTAATGAAACACATG 438
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GACAGCCACCGGTGAAATTCCGGCAATACGCCGGTTATGTGACGGTTAATGAAACACATG 419
Query 439 GAAGAGCATTGTTCTATTGGTTCTTTGAAGCCACTCAGAATCCAAGCAAAAAACCTGTCC 498
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 420 GAAGAGCATTGTTCTATTGGTTCTTTGAAGCCACTCATAATCCAAGCAAAAAACCTCTCC 479
Query 499 TCCTTTGGCTCAATGGAGGACCGGGATGTTCATCAATCGGATTCGGAGC-TGCAGAAGAA 557
|||||||||||||||||||||| |||||||||||||| ||||| ||||| | ||||||||
Sbjct 480 TCCTTTGGCTCAATGGAGGACCTGGATGTTCATCAATTGGATTTGGAGCAT-CAGAAGAA 538
Query 558 CTGGGACCATTCTTCCCACAAAACTCGAGTCAGCCTAAACTCAAGCTAAATCCATACAGC 617
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTGGACCATTCTTCCCTCAAAACTCGAGTCAGCCTAAACTCAAGCTAAATCCATACAGC 598
Query 618 TGGAACAAAGCGGCGAATTTGTTATTCTTGGAATCGCCGGTTGGAGTTGGATTCTCCTAT 677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGAACAAAGCGGCGAATTTGTTATTCTTGGAATCGCCGGTTGGAGTTGGATTCTCCTAC 658
Query 678 ACTAACACAAGCCGTGATATAAAACAACTCGGCGACACTGTCACAGCGAGAGACTCGTAC 737
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 659 ACTAACACAAGCCGTGATATAAATCAACTCGGCGACACCATCACAGCGAGAGACTCGTAC 718
Query 738 AACTTCCTTGTCAACTGGTTCAAGAGATTTCCC-CAGTACAAGTCACACGACTTCTACAT 796
|| |||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct 719 AATTTCCTTGTCAACTGGTTCAAGAGA-TTCCCTCAATACAAGTCACACGAATTCTACAT 777
Query 797 TGCCGGAGAAAGCTACGCCGGCCATTACGTCCCACAACTTTCGGAGCTCATCTACAAAGA 856
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 778 CGCCGGTGAAAGCTACGCCGGCCATTACGTTCCTCAACTTTCGGAGCTCATCTACAATGA 837
Query 857 AAACAAGATTGCGTCCAAGAAAGATTTCATTAATCTCAAGGGTTTAATGATAGGAAACGC 916
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 AAACAAGATTGCGCCCAAGAAAGATTTCATTAATCTTAAGGGTTTAATGATAGGAAACGC 897
Query 917 GTTATTGGATGACGAAACGGATCAAAAGGGGATGATAGAATATGCATGGGATCACGCGGT 976
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTATTAGATGACGAAACGGATCAAAAGGGGATGATAGAATATGCATGGGATCACGCGGT 957
Query 977 GATATCAGATGCATTGTACGAGAAAGTGAA-CAAAAACTGCGATTTCAAACAAAAACTTG 1035
||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||||||
Sbjct 958 GATATCAGATGCATTGTACAAGAAAGTGAATC-AAAACTGTGATTTCAAACAAAAACTTG 1016
Query 1036 TGACCAAGGAATGCAACGAC-GCTTTAGATGAGTATTTTGATGTATACAAGATCCTTGAC 1094
|||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 TGACCAAGGAATGCAATG-CGGCTCTAGATGAGTATTTTGATGTATACAAGATCCTTGAC 1075
Query 1095 ATGTACAGTCTGTACGCTCCAAAGTGTGT--CC-CCACCTCCACGAACTCCTCTACTTCT 1151
||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1076 ATGTACAGTCTGTACTCTCCGAAGTGTGTCCCCACCACCTCCACGAACTCCTCTACTTCT 1135
Query 1152 CATTCAGTCGCCGGAAACCGCCCCCTACCCGCATTCCGAAGCATTCTACGACCCCGTCTC 1211
||||||||||| |||||||||||| ||||||| ||||||||| |||| ||||||||||||
Sbjct 1136 CATTCAGTCGCTGGAAACCGCCCCTTACCCGCGTTCCGAAGCGTTCTCCGACCCCGTCTC 1195
Query 1212 ATCTCTCACAATGAAGGATGGAGGAGGATGGCCGCCGGGTACGATCCATGTGCATCAGAG 1271
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1196 ATCTCTCACAATGAAGGATGGAGGAGGATGGCGGCCGGGTACGACCCATGTGCATCGGAG 1255
Query 1272 TATACAGAAAAATATATGAACAGAAAAGATGTTCAGGAGGCACTTCACGCTAATGTCACC 1331
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1256 TATACAGAAAAGTATATGAACAGGAGAGATGTTCAGGAGGCACTTCACGCTAATGTCACC 1315
Query 1332 AACATCTCTTACCCTTGGACTCATTGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCC 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AACATCTCTTACCCTTGGACTCATTGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCC 1375
Query 1392 GCTTCTATGCTTCCAACCTTAAGAACACTTGTTTCAGCGGGATTACGCGTATGGGTTTTC 1451
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1376 GCTTCTATGCTTCCAACCTTAAGAACACTTGTATCAGCGGGATTACGCGTATGGGTTTTC 1435
Query 1452 AGTGGGGATACAGACGGGCGAATCCCCGTGACCGCAACCAGATACTCACTAAAGAAGCTA 1511
|||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1436 AGTGGGGATACAGATGGACGAATCCCAGTGACCGCAACCAGATACTCATTAAAGAAGCTT 1495
Query 1512 GGTCTTAAGATAGTCCAAGACTGGACACCTTGGTACACCAAACTACAGGTCGGAGGGTGG 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GGTCTTAAGATAGTCCAAGACTGGACACCTTGGTACACCAAACTACAGGTCGGAGGGTGG 1555
Query 1572 ACGGTGGAGTATGACGGTTTAATGTTTGTGACGGTAAGAGGAGCGGGACACCAGGTTCCG 1631
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1556 ACGGTGGAGTATGATGGGTTAATGTTTGTGACGGTAAGAGGAGCGGGACACCAAGTTCCG 1615
Query 1632 ACATTTAAACCTAGAGAAGCTCTTCAGCTCATTCATCATTTTCTAGGCAATAAGAAACTT 1691
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1616 ACATTCAAACCTAGAGAAGCTCTTCAGCTCGTTCATCATTTTCTAGGCAATAAGAAACTT 1675
Query 1692 CCTACTTTTCCCTTTTGATATTTTCTCTACCCACAGATTTTATGATCTTTATATAATTCT 1751
||||| | ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1676 CCTACATATCCCTTTTGATATATTCTCAACCCACAGATTTTATCATCTTTATATAATTCT 1735
Query 1752 TAA-AACAATAATAAACAGATTTGAGCAAAA-TAGGCCATTATATTAGAATTGTACAAAT 1809
||| || |||||||||||||||||||||||| | ||||||||||||||||||||| | ||
Sbjct 1736 TAAGAA-AATAATAAACAGATTTGAGCAAAACT-GGCCATTATATTAGAATTGTATATAT 1793
Query 1810 GTTTTATCGCGTTTTACATGTTTTCTCGTGTTACAGTGACCTCTAA 1855
| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1794 GATTTATCGCGTTTTACATGTTTTCTCGTGTTACTGTGACCTCTAA 1839
> Ahg941844 jgi|Araly1|941844|scaffold_602388.1
Length=411
Score = 610 bits (330), Expect = 1e-173
Identities = 360/375 (96%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 1356 TGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCCGCTTCTATGCTTCCAACCTTAAGA 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 TGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCCGCTTCTATGCTTCCAACCTTAAGA 96
Query 1416 ACACTTGTTTCAGCGGGATTACGCGTATGGGTTTTCAGTGGGGATACAGACGGGCGAATC 1475
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 97 ACACTTGTATCAGCGGGATTACGCGTATGGGTTTTCAGTGGGGATACAGATGGACGAATC 156
Query 1476 CCCGTGACCGCAACCAGATACTCACTAAAGAAGCTAGGTCTTAAGATAGTCCAAGACTGG 1535
|| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 157 CCAGTGACCGCAACCAGATACTCATTAAAGAAGCTTGGTCTTAAGATAGTCCAAGACTGG 216
Query 1536 ACACCTTGGTACACCAAACTACAGGTCGGAGGGTGGACGGTGGAGTATGACGGTTTAATG 1595
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 217 ACACCTTGGTACACCAAACTACAGGTCGGAGGGTGGACGGTGGAGTATGATGGGTTAATG 276
Query 1596 TTTGTGACGGTAAGAGGAGCGGGACACCAGGTTCCGACATTTAAACCTAGAGAAGCTCTT 1655
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 277 TTTGTGACGGTAAGAGGAGCGGGACACCAAGTTCCGACATTCAAACCTAGAGAAGCTCTT 336
Query 1656 CAGCTCATTCATCATTTTCTAGGCAATAAGAAACTTCCTACTTTTCCCTTTTGATATTTT 1715
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| ||
Sbjct 337 CAGCTCGTTCATCATTTTCTAGGCAATAAGAAACTTCCTACATATCCCTTTTGATATATT 396
Query 1716 CTCTACCCACAGATT 1730
||| |||||||||||
Sbjct 397 CTCAACCCACAGATT 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5