BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23290.1 Length=734 Score E Sequences producing significant alignments: (Bits) Value Ahg941854 jgi|Araly1|941854|scaffold_602398.1 804 0.0 Ahg915889 jgi|Araly1|915889|Al_scaffold_0008_640 544 5e-154 Ahg338893 jgi|Araly1|338893|fgenesh1_pg.C_scaffold_2000992 544 5e-154 Ahg949602 jgi|Araly1|949602|scaffold_801489.1 259 2e-68 Ahg920617 jgi|Araly1|920617|scaffold_101898.1 259 2e-68 > Ahg941854 jgi|Araly1|941854|scaffold_602398.1 Length=496 Score = 804 bits (435), Expect = 0.0 Identities = 471/488 (97%), Gaps = 3/488 (1%) Strand=Plus/Plus Query 53 GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 112 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11 GAGAGAGAA-AATGGCGTCGTCATCGTCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 69 Query 113 AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA 172 |||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct 70 AGCTGAAAGCGTTGAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAGATAGTCTTA 129 Query 173 ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT 232 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 130 ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTCT 189 Query 233 CTCTTCGACCTCAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTG 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 CTCTTCGACCTCAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTG 249 Query 293 GGACACTTGATGAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGA 352 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 250 GGACACTTGATGAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATCGAGA 309 Query 353 AAACAATGGATGATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAAC 411 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 310 AAACAATGGATGATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCCAAC 368 Query 412 TTTGATCAACTTTTTGAGGTCGCAGCGAAAAAGAAAAGCGTGGCAGATGAAGCTGGAATG 471 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 369 TTTGACCAACTTTTTGAGGTCGCAGCGAAAAAGAAAAGCGTGGCAGATGAAGCTGGGATG 428 Query 472 GTCTTGCAGGCCAAAGTTAAACAGTTAACAGCTGCAACCACGTCGTGAAAATTATTCCTT 531 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 429 GTCTTGCAGGCCAAAGTTAAACAGTTAACAGCTGCAACCACGTCATGAAAATTCTTCCTT 488 Query 532 CTCTAGTG 539 |||||||| Sbjct 489 CTCTAGTG 496 > Ahg915889 jgi|Araly1|915889|Al_scaffold_0008_640 Length=357 Score = 544 bits (294), Expect = 5e-154 Identities = 333/352 (95%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 64 ATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTAAAAGCT 123 |||| |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1 ATGGTGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTGAAGGCG 60 Query 124 TTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCAACAACATCCGT 183 || ||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||| Sbjct 61 TTAAAGGAGCAAGCAGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTAACAGCATCCGT 120 Query 184 ACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 243 ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 180 Query 244 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTGGGACACTTGAT 303 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTTCCTGGGACACTTGAT 240 Query 304 GAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGAAAACAATGGAT 363 ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| Sbjct 241 GAAGCTGATAAGGTTTTGGTTGATATTGGCACTGGTTACTTCGTCGAGAAAACAATGGAT 300 Query 364 GATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAACTTT 414 ||||||||||||||||||||||||||||| || |||||||||||| |||||| Sbjct 301 GATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCAAACTTT 351 > Ahg338893 jgi|Araly1|338893|fgenesh1_pg.C_scaffold_2000992 Length=357 Score = 544 bits (294), Expect = 5e-154 Identities = 333/352 (95%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 64 ATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTAAAAGCT 123 |||| |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1 ATGGTGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTGAAGGCG 60 Query 124 TTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCAACAACATCCGT 183 || ||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||| Sbjct 61 TTAAAGGAGCAAGCAGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTAACAGCATCCGT 120 Query 184 ACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 243 ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 ACAGCCACCGTCCGTCTTGATGCTGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 180 Query 244 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTGGGACACTTGAT 303 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTTCCTGGGACACTTGAT 240 Query 304 GAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGAAAACAATGGAT 363 ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| Sbjct 241 GAAGCTGATAAGGTTTTGGTTGATATTGGCACTGGTTACTTCGTCGAGAAAACAATGGAT 300 Query 364 GATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAACTTT 414 ||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 301 GATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCCAACTTT 351 > Ahg949602 jgi|Araly1|949602|scaffold_801489.1 Length=338 Score = 259 bits (140), Expect = 2e-68 Identities = 169/183 (92%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 53 GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 112 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 11 GAGAGAGAA-AATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATTGGAATCGATC 69 Query 113 AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA 172 |||| || || || ||||||||||| ||||||||||||||||| |||||| ||||||| | Sbjct 70 AGCTGAAGGCGTTAAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTA 129 Query 173 ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT 232 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 130 ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTAT 189 Query 233 CTC 235 ||| Sbjct 190 CTC 192 > Ahg920617 jgi|Araly1|920617|scaffold_101898.1 Length=338 Score = 259 bits (140), Expect = 2e-68 Identities = 169/183 (92%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 53 GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 112 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 11 GAGAGAGAA-AATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATTGGAATCGATC 69 Query 113 AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA 172 |||| || || || ||||||||||| ||||||||||||||||| |||||| ||||||| | Sbjct 70 AGCTGAAGGCGTTAAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTA 129 Query 173 ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT 232 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 130 ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTAT 189 Query 233 CTC 235 ||| Sbjct 190 CTC 192 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27029148153 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5