BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23330.1 Length=1205 Score E Sequences producing significant alignments: (Bits) Value Ahg489194 jgi|Araly1|489194|fgenesh2_kg.6__2328__AT5G23330.1 1640 0.0 Ahg487667 jgi|Araly1|487667|fgenesh2_kg.6__801__AT5G08340.1 610 7e-174 > Ahg489194 jgi|Araly1|489194|fgenesh2_kg.6__2328__AT5G23330.1 Length=1183 Score = 1640 bits (888), Expect = 0.0 Identities = 1078/1167 (92%), Gaps = 24/1167 (2%) Strand=Plus/Plus Query 1 CCGGCGAAGAGTTTCGGAGAACAAGTTTGGTCTTTTTAGGGGTTTGAGCAGTGGAGTCGG 60 |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| Sbjct 1 CCGGCGAAGAGTTTCGGAGAGCAAGTTTGGT-TTTTTAGGGGTTTGAGCAGTAGAGTCGG 59 Query 61 -TA-ACCATGTTATGCGGAGGCTCTCGCGCCTCCGTGCATTTGTGGGACCATCGTCATCC 118 | |||||||| |||||||||||||| |||||||||||||||| |||||| |||||||| Sbjct 60 AGAGACCATGTTGTGCGGAGGCTCTCGTGCCTCCGTGCATTTGTTGGACCACCGTCATCC 119 Query 119 TCCTAGGCTCGGTGCTAAGGTTTTGCGGAAATCTTCGTTCATGCTCAGACCTTGTTCGGC 178 ||||| ||||||||||||||| |||||| ||||||| ||| | || |||||||||||||| Sbjct 120 TCCTACGCTCGGTGCTAAGGTCTTGCGGCAATCTTCATTCGTCCTTAGACCTTGTTCGGC 179 Query 179 TATATCGCAGCAGCGGATAAAGTCGTCGT--T-TAGGTCTCACTGTAAAACTCCAAGAAA 235 || ||||||||||| ||| |||||||||| | ||||||||||||||||| | Sbjct 180 TAAATCGCAGCAGCCGATGAAGTCGTCGTCGTATAGGTCTCACTGTAAAA---C------ 230 Query 236 AATCCCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGA 295 | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 231 --T-CCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATAATCTTGAGCTTTCAGCTGA 287 Query 296 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 347 Query 356 CGGTCATCGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTT 415 ||||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 348 CGGTCATCGAGAGCTTGCAATCCAAGCTGCAAGAACTGGTACTCCATATCTATTGTCGTT 407 Query 416 TGTTGGATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGA 475 ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 408 TGTTGGAATGGCTGAAGTACTTGGTTGGAAACCTAGAGCACCGATAGTAGCCAAATGCGA 467 Query 476 CAGAAAACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 535 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 TAGAAAACGGGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 527 Query 536 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTC 595 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 528 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAGCAGTTTGTCGAGAAGTTGTC 587 Query 596 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 647 Query 656 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGCGCTTACAT 715 ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| Sbjct 648 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGTAAAGAGTACGGTATCAGCGCTTACAT 707 Query 716 CATTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAG---GAGGAGGACTC 772 ||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| Sbjct 708 CATTAACTCGGTGATGGATAAGAACCAAGTCTCTGGAAACACGGACACAGAGGAGGACTC 767 Query 773 AAAGTCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGG 832 |||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||| Sbjct 768 AAAGTCAAAAGAAAGAGGACAAGTCTCGTCCACACGAGTCCGACATGCTCTTGCTGCAGG 827 Query 833 AGATGTGAGGTATGTAACAGAGCTCCTCGGCAGACCACACAGGGTCATCTCTCGGACAAG 892 |||||||||||||||||| |||||||||||||||||||||||||| ||||| || || Sbjct 828 AGATGTGAGGTATGTAACTGAGCTCCTCGGCAGACCACACAGGGTTATCTCAAGGGTGAG 887 Query 893 AACACAAGATTTAACGAGCAAAAGAGGGAGGATCTCGCTTCAGACATCTTCGCTACTAAA 952 ||||||||||||||| |||||| || ||||| || ||||||| ||||| |||||||| || Sbjct 888 AACACAAGATTTAACAAGCAAAGGAAGGAGGGTCACGCTTCATACATCGTCGCTACTGAA 947 Query 953 TTTACCACCAGGGAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1012 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 TTTACCACCTGGAAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1007 Query 1013 AATTTCGTGTAAGGTTATTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAACG 1072 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1008 AATTTCGTGTAACGTTGTTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAATG 1067 Query 1073 TTTCCACAACTCAGATGAGTCTCAAGA-G--TTTCAACTCTTAGGGATTGAGTTCGGTTA 1129 ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||| Sbjct 1068 TTTCCACAACTCAGATGGGTCTCAAGAAGAGTTTCTACTCTTAGGGATTGAGTTCGGTTG 1127 Query 1130 ATTCACACATTGATAATCAAAAGAATA 1156 ||||||||||||||||||||||||||| Sbjct 1128 ATTCACACATTGATAATCAAAAGAATA 1154 > Ahg487667 jgi|Araly1|487667|fgenesh2_kg.6__801__AT5G08340.1 Length=1205 Score = 610 bits (330), Expect = 7e-174 Identities = 764/969 (79%), Gaps = 47/969 (5%) Strand=Plus/Plus Query 185 GCAGCAGCGGATAAAGTCGTCGTTTAGGTCTCACTGTAAAACTCCAAGAAAAATCCC-AG 243 ||| |||||||| | || || ||| || |||| || | |||||| || ||||||| | Sbjct 235 GCATCAGCGGATGATTTCTTCATTTGGGCCTCATTGCAGAACTCCCGGAGAAATCCCTA- 293 Query 244 CTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGAAGGGCTT- 302 || || | ||||||||||||| |||| ||| || |||||||| ||| |||| || || Sbjct 294 TTCTTCACAATTGTTTCAGCCAACGAGAAGATGATACTGAGCTTCCAGTTGAA-GGATTA 352 Query 303 TCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATATCGGTCAT 362 ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| ||| Sbjct 353 TCCCCAGTTTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCAT 412 Query 363 CGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTTT-GTTGG 421 |||||||| ||||||||||| |||||||||| ||||| |||||| | || ||| ||||| Sbjct 413 CGAGAGCTAACAATTCAAGCTTCAAGAATTGGAACTCCATATCTATTATC-TTTCGTTGG 471 Query 422 ATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGA-CAGAA 480 | |||| || |||||||||||| ||||||| || |||||||| || ||||| || | ||| Sbjct 472 AATGGCCGAGGTACTTGGTTGGGAGCCTAGGGCTCCAATAGTGGCTAAATGTGATC-GAA 530 Query 481 AACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTA-ACATAGCACCGGTAGAGTTTGAG 539 || | |||||| |||||||||| || |||||||| | ||| |||||||| |||| ||| Sbjct 531 AAAGGGTGCTTACCTCTTGGGCCTCATATTGTGG-AGACAGAGCACCGGAAGAGCACGAG 589 Query 540 ATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTCAAGA 599 || |||||||||||||| ||||| |||| ||||||||||||||| |||||| |||||| | Sbjct 590 ATAGAATTTGCCAGCGTGCGACATCTTACCCCACAACAGTTTGTGGAGAAGCTGTCAA-A 648 Query 600 G-AGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGCTTC 658 | |||| ||||||||||||||||||||||| ||||||||||| |||||||| || || Sbjct 649 GGAGCTCAGAGTCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTC 708 Query 659 TGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGC-GCTTACATCA 717 |||||| |||||||| || ||||| | ||| | || | |||||||| | |||||||||| Sbjct 709 TGGTGATGCCTCTGAGCTAGTGAGACTGTGCGAGGAATATGGTATCA-CTGCTTACATCA 767 Query 718 TTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAGG-AGGAGGACTCAAAG 776 | ||||| |||||||| ||||| |||| ||| | ||| | ||| ||| ||||||||| Sbjct 768 TAAACTCTGTGATGGACAAGAAACAAGGCTCAGGAAAGAGAGACTCAGG-GGACTCAAAA 826 Query 777 TCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGGAGAT 836 || ||| | || |||||||| || ||||| || || || ||||| || || |||||| Sbjct 827 --GACAGA--G-GG-CAAGTCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGAT 880 Query 837 GTGAGGTATGTAACAGAGCTCCTCGGCAGACCACA-CAGGGTCATCTCTCG-GA--CAAG 892 ||| ||| ||| |||||||||| ||||| |||| | || | |||| | | || || | Sbjct 881 ATGAAGTACGTATCAGAGCTCCTTGGCAGGGCACATC-GGCTTATCT-T-GAGAGTCA-G 936 Query 893 AACACAAGATTTAACGAGCAAAAGAGGGAGGATCTC-GCTTCAGACATCTTCGCTACTAA 951 ||| |||||| | |||| |||| | | ||| || | | | || ||| || |||| | Sbjct 937 AACCCAAGATATGCCGAGTGAAAG-G--ATGATTTCTG-TCCCGAGATCATCAATACTTA 992 Query 952 ATTTACCACCAGGGAATGG-AGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAG-CA 1009 ||||||| |||||||| || | |||| || ||||| | |||| |||| |||||| || | Sbjct 993 ATTTACCGCCAGGGAACGGTA-TTTATAAGGCATGTTTGCTTCTAGTCGGTGATGAGTCT 1051 Query 1010 TCCAATTTCGTGTAAGGTTA-TTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAG 1068 || |||| |||||| || | |||| || ||||| ||| || || |||||||| |||| | Sbjct 1052 TC-AATTCCGTGTACCGT-AGTTGTTGAGACATCAAATATCCATGTAGAAACAAAGGAGG 1109 Query 1069 AACGTTTCCACAACTCAGAT-GAGTCTCAAGAGTTTCA-ACTCTT-AGGGATTGAGTTCG 1125 ||| || || | |||| | ||||||||| ||| | |||||| || | ||||||||| Sbjct 1110 TACGACTCTGTAATTTAGATTG-GTCTCAAGAATTT-AGACTCTTGAGTG-TTGAGTTCG 1166 Query 1126 GTTAATTCA 1134 ||| ||||| Sbjct 1167 GTTGATTCA 1175 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44985042060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5