BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23540.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489215 jgi|Araly1|489215|fgenesh2_kg.6__2349__AT5G23540.1 1860 0.0
> Ahg489215 jgi|Araly1|489215|fgenesh2_kg.6__2349__AT5G23540.1
Length=1228
Score = 1860 bits (1007), Expect = 0.0
Identities = 1171/1245 (94%), Gaps = 31/1245 (2%)
Strand=Plus/Plus
Query 18 AAGGTTTTCTT-ATAAGATCCCATTCTTGTAGCAAAAACCCAGAAGAACAAACTTTCGAA 76
|||||||| || ||||||||||||| ||||||| ||||||||||||| ||||| |||||
Sbjct 1 AAGGTTTT-TTAATAAGATCCCATTGTTGTAGC--AAACCCAGAAGAAGAAACTCTCGAA 57
Query 77 GAAGACGACTAATCAATTCATCTGATTATGGAGAGACTACAGAGAATCTTCGGAGCTGGT 136
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 58 GAAGACGACTAATTGATTCATCTGATTATGGAGAGATTACAGCGAATCTTCGGAGCTGGT 117
Query 137 GGCGGTTTAGGTCACGCATCGCCTGATTCTCCGACTCTCGATACATCGGAGCAGGTTTAC 196
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 GGCGGATTAGGTCACGCATCGCCTGATTCTCCGACTCTCGATACATCGGAGCAGGTCTAC 177
Query 197 ATCTCTTCTCTCGCTCTCCTCAAGATGCTTAAGCACGGAAGAGCTGGTGTTCCTATGGAA 256
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 ATCTCTTCTCTCGCTCTCCTCAAGATGCTTAAGCACGGGAGAGCTGGTGTTCCTATGGAA 237
Query 257 GTCATGGGATTGATGCTTGGAGAGTTTGTGGATGAATACACTGTTAGGGTTGTGGATGTT 316
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 238 GTCATGGGATTGATGCTTGGAGAGTTTGTGGATGAGTACACTGTTAGAGTTGTGGATGTT 297
Query 317 TTTGCGATGCCTCAGAGTGGTACTGGTGTTAGTGTTGAAGCTGTTGATCATGTTTTCCAG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTGCGATGCCTCAGAGTGGTACTGGTGTTAGTGTTGAAGCTGTTGATCATGTTTTCCAG 357
Query 377 ACTAATATGCTCGACATGCTTAAACAGACCGGAAGACCTGAGATGGTGGTTGGTTGGTAT 436
||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||
Sbjct 358 ACTAATATGCTCGACATGCTTAAGCAGACTGGAAGACCTGAAATGGTTGTTGGTTGGTAT 417
Query 437 CATTCACATCCTGGATTCGGCTGCTGGCTTTCTGGGGTTGACATTAATACTCAACAGAGT 496
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 CATTCACATCCTGGATTTGGCTGCTGGCTTTCTGGGGTTGACATTAATACCCAACAGAGT 477
Query 497 TTTGAAGCTTTGAATCAGCGAGCTGTAGCAGTGGTGGTAGATCCGATTCAGAGTGTGAAA 556
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTGAAGCTTTGAACCAGCGAGCTGTAGCAGTGGTGGTAGATCCGATTCAGAGTGTGAAG 537
Query 557 GGAAAGGTGGTGATTGATGCGTTCCGCTCCATAAATCCACAGACCATTATGCTTGGGCAG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAAAGGTGGTGATTGATGCGTTCCGCTCCATAAATCCACAGACCATTATGCTTGGGCAG 597
Query 617 GAACCCCGTCAAACAACATCGAACCTTGGGCACTTGAACAAACCATCGATCCAGGCTTTG 676
|||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 598 GAACCCCGTCAAACCACATCGAACCTTGGGCACCTAAACAAACCATCGATCCAGGCCTTG 657
Query 677 ATTCACGGGTTGAACAGACACTATTACTCAATAGCAATCAACTATAGGAAGAACGAGCTT 736
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 ATTCATGGGTTGAACAGACACTATTACTCAATAGCAATCAACTACAGGAAGAACGAGCTT 717
Query 737 GAGGAGAAGATGTTACTCAACCTCCACAAGAAGAAATGGACAGATGGTCTGACGCTAAGA 796
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GAGGAGAAGATGTTACTGAACCTCCATAAGAAGAAATGGACAGATGGTCTGACGCTAAGA 777
Query 797 CGCTTTGACACCCACTCCAAGACCAACGAACAGACGGTCCAGGAGATGTTGAGCTTGGCT 856
| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 778 CCCTTTGACACCCACTCCAAGACAAATGAACAGACGGTCCAGGAGATGTTGAGCTTGGCT 837
Query 857 GCTAAATATAACAAGGCGGTTCAAGAGGAGGACGAGTTGTCACCAGAGAAGCTGGCAATT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTAAATATAACAAGGCGGTTCAAGAGGAGGACGAGTTGTCACCAGAGAAGCTGGCAATT 897
Query 917 GTGAATGTGGGAAGACAAGATGCAAAGAAGCATCTGGAAGAACATGTCTCGAACCTCATG 976
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 898 GTGAATGTGGGAAGACAAGACGCAAAGAAGCATCTGGAAGAACATGTTTCCAACCTCATG 957
Query 977 TCATCCAACATTGTTCAGACACTAGGCACTATGCTCGACACTGTTGTCTTCTAGAGAGCT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCATCCAACATTGTTCAGACACTAGGCACTATGCTCGACACTGTTGTCTTCTAGAGAGCT 1017
Query 1037 TACTTCTCCAGCCGCTTCAAGTCATTGAGCTTTGTTCTTCTGCATCTCTTTGG---CTT- 1092
|||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 1018 TACTTCTCCAGC-GCTTCAAATCATTGAGCTTTGTTCTTCTGCATCTCCTTGGTTTCTTT 1076
Query 1093 CTACTGAATGTTCTCTTTTTATC--TG--C---TAG-CTTTTTACAAGGTTGTACTGTAC 1144
||||||||||||||||||||||| | | ||| | ||||||||||||||| |||||
Sbjct 1077 CTACTGAATGTTCTCTTTTTATCCCTTATCAACTAGGCATTTTACAAGGTTGTATTGTAC 1136
Query 1145 TATGTGATTTCGTTCGTT-AAGGGCAGGGATCGatttctatttctttgcatattattttc 1203
|||||||||||||||||| |||| || |||| ||||| ||||||||||||| | ||
Sbjct 1137 TATGTGATTTCGTTCGTTTAAGGCCATGGATTGATTTATATTTCTTTGCAT-T-AT---- 1190
Query 1204 agattttattttcctcccatttttagattttatGCTGCAACTTTC 1248
| |||| |||||||||||||||||||||||||||||||||
Sbjct 1191 A--TTTT-----CCTCCCATTTTTAGATTTTATGCTGCAACTTTC 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5