BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23720.1 Length=3115 Score E Sequences producing significant alignments: (Bits) Value Ahg489232 jgi|Araly1|489232|fgenesh2_kg.6__2366__AT5G23720.1 4883 0.0 > Ahg489232 jgi|Araly1|489232|fgenesh2_kg.6__2366__AT5G23720.1 Length=3091 Score = 4883 bits (2644), Expect = 0.0 Identities = 2926/3064 (95%), Gaps = 12/3064 (0%) Strand=Plus/Plus Query 4 TTCCTCTTCTCAGATACAAAGCTGACATTTGAAGAAAAAGAC--ATTTCTAAAATTAAA- 60 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 TTCCTCTTCTCAGATACAAAGCTGACATTTGAAGAAAAAGACATATTTCTAAAATTAAAC 60 Query 61 ---CAGAACCTAAGCTTTTGCAATGGCGGAACCTGAGAAGAAGCGAGATCAACCATTTTC 117 ||| | | |||||||| |||||||||| ||||||||||||||||||||| ||||||| Sbjct 61 TCTCAG-A-CGAAGCTTTTTCAATGGCGGATCCTGAGAAGAAGCGAGATCAATCATTTTC 118 Query 118 TCAAGAAAAAGACGAAGAGAAAGATCTATACCTTGTTCACGACGAGCACGAGTCTCCTCT 177 |||||| |||||||| |||||| |||| ||||||| |||||||||||||||||||||||| Sbjct 119 TCAAGAGAAAGACGACGAGAAATATCTCTACCTTGGTCACGACGAGCACGAGTCTCCTCT 178 Query 178 TCCTCTCACCGTCACTTCTCGTGTTTTGTACATGTTAGGAGATATAGCATCTGGTCCAGC 237 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 179 TCCTCTCACCGTCACTTCTCGTGTTTTGTACATGTTAGGAGACATAGCATCTGGTCCAGC 238 Query 238 TTATAGGTTTACTCAATGGTTGGATTTAGTTCGTAAACGAAGTGCTACTTACGGATCCTC 297 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TCATAGGTTTACTCAATGGTTGGATTTAGTTCGTAAACGAAGTGCTACTTACGGATCCTC 298 Query 298 TGGCTTCCCTCACCGCCTTCACCGCATCGATGATATGGTCACTAGTGCAGGAGAGAGGAA 357 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 299 TGGCTTCCCTCACCGCCTTCACCGCATCGATGATATGGTTACTAGTGCAGGAGAGGGGAA 358 Query 358 TACTGATCCTAAAAGTCCACCAAGTAGGCAGAGTTCAGAGATTAGTTTGTGGGAAAGGCT 417 || |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 359 TATTGATCCAAAAAGTCCACCAAGTAAGCAGAGTTCAGAAATTAGTTTGTGGGAAAGGCT 418 Query 418 TGGTAAAGCTTCTACTGTGGATATTGATTCGAGCTGTTTTTCATGGAATATGTTGTCTTC 477 |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 419 TGGTAAAGCTTCTACTGTGGATATCGAATCGAGCTGTTTTTCGTGGAATATGTTGTCTTC 478 Query 478 ACTTCATCATACTGAACATAGTAGTAGCACTGATCATTCTGAAGAAGACCAGAGTAAACC 537 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 479 ACTTCATCATACTGAGCATAGTAGTAGCACTGATCATTCTGAAGAGGACCAGAGTAAACC 538 Query 538 ACTTGAGGTTACTGTGAATTCTGGAGGAGTTGTTTTCTTTGCCCTGTTCAATAGTTCCAG 597 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 539 ACTTGAGGTTACTGTGAATTCTGGGGGAGTTGTTTTCTTTGCCCTGTTCAACAGTTCCAG 598 Query 598 CTCTGAAGATGCCTCTCGTAAGGAAGAAGCAGCAGTTATTAAATTTGCATCATCGAGGAT 657 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 599 CTCTGAAGATGCTTCTCGTAAGGAAGAAGCAGCAGTTATAAAATTTGCATCATCGAGGAT 658 Query 658 GGCCACGCAATCAGAACGTCTAGGTTATGAGTTTTCCAAGTGGCTAGGGGTGCAGATTCC 717 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 GGCCACGCAATCAGAACGTCTAGGTTATGAGTTTTCCAAGTGGCTAGGGGTTCAGATTCC 718 Query 718 GCAGGCTAGAGTAATTCACAGCTGTAATCCTGAGTGGACACTGATCAAAGAAGCCACTGA 777 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GCAGGCTAGAGTAATTCATAGCTGTAATCCTGAGTGGACACTGATCAAAGAAGCCACTGA 778 Query 778 AAAAGCACAAGCTAAAGCGACTTCGGAGGGGGACGAGGTTGGTGAAATGACATGTTCAGA 837 ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| Sbjct 779 AAAAGCACAAGCTAAAGCGACTTTGGAGGGAGACGAAGTTGGTGAAATGACATGTTCAGA 838 Query 838 ACTTCTGGAAGCCCTTGAGCTCAGCCGTTGTCTTCTCTTAATGAGTTATGTTCATGGATG 897 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 839 ACTTCTGGAAGCCCTTGAGCTCAGCCGTTGTCTTCTCCTAATGAGTTATGTTCATGGATG 898 Query 898 TCCAATGCTGGAGAGCATGAGTAGTTTTGAAACTGAAGAAAAAGCAGAGAGAGCTGCTGC 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TCCAATGCTGGAGAGCATGAGTAGTTTTGAAACTGAAGAAAAAGCAGAGAGAGCTGCTGC 958 Query 958 AGCTCTAGGGAGAATCTTGGTGTTAGATCTAGTAATTAGGAATGAAGACAGATTACCGTG 1017 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 959 AGCTCTAGGGAGAATCTTGGTGTTAGATCTAGTAATTAGGAACGAAGACAGATTACCTTG 1018 Query 1018 TCGTCAGCTGAGATGGCGTGGCAACCCGGCAAATCTGTTACTGACAGACAGAATTGTGTC 1077 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1019 TCGTCAGCTGAGATGGCGTGGCAACCCGGCAAATCTGTTATTGACAGACAGAATTGTGTC 1078 Query 1078 TTCTGCAAAGCATCATGAATGTTCATTTGATGAAGCTTTTGATTCCGCCATCAAACGGTA 1137 |||| |||| |||| |||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 1079 TTCTACAAAACATCTTGAATGCTCATTTGAAGAAGCTTTTGATTCCGCCATTAAACGGTA 1138 Query 1138 CCATCCAAAGGACTATAGATCCATTCAAAGGGAAAGAAGAGCTTCTTCCGTAGATAGCAG 1197 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1139 CCATCCAAAGGACTACAGATCCATTCAAAGGGAAAGAAGAGCTTCTTCTGTAGATAGCAG 1198 Query 1198 ATCCAGGTTGAGTATCAGTGATCAAATGTTGGTCTCACAGGCTTCTGATTTTTCTGATAT 1257 ||||||| |||||||||||||||||||||||||||||||| | |||| |||||| ||||| Sbjct 1199 ATCCAGGCTGAGTATCAGTGATCAAATGTTGGTCTCACAGTCGTCTGGTTTTTCCGATAT 1258 Query 1258 AACGGAATCACCTAGATCATATGATACTGGTTTAATGAGTCCAATGTCTGATAGATCAGT 1317 |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1259 AACGGAATCACCTAAATCGTATGACACTGGTTTAATGAGTCCAATGTCTGATAGATCAGT 1318 Query 1318 AGCTGCCGATTTTCACCTCGTTGCCATAGACTCGGGTGTTCCACGGCGGCCTCCTGCTGG 1377 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 AGCTGCTGATTTTCACCTTGTTGCCATAGACTCGGGTGTTCCACGGCGGCCTCCTGCTGG 1378 Query 1378 AAAACGGGCAAGCGACCAAGAAATTTATCCAAGATTAGTTGAGTTACTCCTCAATAGTAG 1437 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1379 AAAACGGGCCAGCGACCAAGAAATTTATCCAAGATTAGTTGAGCTACTCCTCAATAGTAG 1438 Query 1438 CCAATATTCTTCGAATTTGTTACATGAAATAACAGAAGGAAGTTTAGGATATCCACAGGC 1497 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1439 CCAATACTCTTCGAATTTGTTACATGAAATAACAGAAGGAAATTTAGGATATCCACAGGC 1498 Query 1498 AGAAGATGGTGAAGAAACATCTAATGTTCGATCTGTAGTAACACCAGTTGTACGCGAGTT 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1499 AGAAGATGGTGAAGAAACATCTAATGTTCGATCTGTAGTAACACCAGTTGTACGTGAGTT 1558 Query 1558 TCGAAATGGTTTCCGAGCTGGTCTCAGGGATTTGCAAGAGTTTCACATCTTCCTTGTCAC 1617 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 CCGAAATGGTTTCCGTGCTGGTCTCAGGGATTTGCAAGAGTTTCACATCTTCCTTGTCAC 1618 Query 1618 CCTTCATCAGAAATTAGATGTGTTGCTTCGGGCATTTTTTAGTATGATGGACAAAACAAT 1677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 CCTTCATCAGAAATTAGATGTGTTGCTTCGGGCATTTTTTAGTATGATGGACAAAACAAT 1678 Query 1678 GTGTGCAGATTTTGACAGAGAAGACTTTGCTGTTCCTGAGTCACCTTCACATACTCATGG 1737 |||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||| Sbjct 1679 GTGTGCAGATTTTGACAGAGAAGATTTTTCTGTTCCTGAGTCACCTTCACAAACCCATGG 1738 Query 1738 GCATGAGGTGAATCATTATCCATCTCCCTCAAAAGATCGGGTGCCTAGTGATAACAGCTC 1797 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1739 GCATGAGGTGAATCACTATCCATCTCCCTCAAAAGATCGGGTGCATAGTGATAACAGCTC 1798 Query 1798 TGATCACAGTGAGTCAGATATGCAAAAATCAGTTCCTAGGACACCAAATTCAGAAAACAA 1857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1799 TGATCACAGTGAGTCAGATATGCAAAAATCAGTTCCTAGGACACCAAATTCAGAAAACAA 1858 Query 1858 AGAAGACGGGTCTTCGCCTAAGTCACGTGAAAGTTGGCACGGAAGATCCGGTAAAGGTGG 1917 |||||| | | ||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1859 AGAAGATGCGAGTTCGCCTAAGTCACGTGAAAGTTGGCATGGAAGATCCAATAAAGGTGG 1918 Query 1918 AGAATCTCTTAGCAGTCAGCGTTTGGCAGCAAAGCTCCGTGACTTCCATAAGTTTGCAAA 1977 |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || Sbjct 1919 AGAATCTCTTAGCAGTCAGCGTTTGGCATCAAAGCTCCGCGACTTCCATAAGTTTGCTAA 1978 Query 1978 GGTTGATGCTGAGTCTAATAAAGAACTAGACCAGTGGAATGAAACACTGCGGAATGAAGT 2037 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1979 GGTTGATGCTGAGTCTAATAAAGAACTAGACCAGTGGAATGAAACACTGCGGAATGAAGT 2038 Query 2038 GATGAAACTTTGCCAAGAGAACGGTTTCAACACTGGtttttttGAGGGCAGTGATAATAA 2097 |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 2039 TATGAAACTCTGCCAAGAAAACGGTTTTAACACTGGTTTTTTTGAGGGCAGTGATAATAA 2098 Query 2098 CAGTTGCACAGATGCTTATGAGCTAAAGGTTAGACTTGAGCATATTCTTGAGAGGATATC 2157 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2099 CAGTTGCACAGATGCTTACGAGCTAAAGGTTAGACTTGAGCATATTCTTGAGAGGATATC 2158 Query 2158 ATTGATTAGCAAAGCTGCTAATACAGAGAAACCATCAATGATACAAGAAAATCTTTTTAT 2217 ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 2159 ATTGATTTGCAAAGCTGCTAATACGGAGAAACCATCAATGATACAAGATAATCTTTTTAT 2218 Query 2218 CGGGGGAGGATTGGCTGCAAGGTCGATTTACACTCTTCAGCATTTAGGTATAACTCATGT 2277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2219 CGGGGGAGGATTGGCTGCAAGGTCGATTTACACTCTTCAGCATTTAGGTATAACTCATAT 2278 Query 2278 TCTATGTTTGTGCGCTAATGAAATCGGGCAATCGGATACTCAATACCCGGATCTCTTCGA 2337 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 2279 TCTATGTTTGTGCGCTAATGAAATCGGTCAATCGGATACTCAATACCCGGATCTCTTCAA 2338 Query 2338 GTACCAAAACTTCTCAATAACCGATGATGAAGACTCAAATATCGAGAGCATCTTTCAAGA 2397 |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct 2339 GTACCAAAACTTCTCAATAACCGACGAAGAAGACTCAAAGATCGAGAGCATCTTTCAAGA 2398 Query 2398 AGCTCTCGATTTCATCAAGCATGGCGAAGAAACTGGTGGCAAGATTTTAGTTCATTGCTT 2457 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2399 AGCTCTCGATTTCATCAAGCATGGCGAAGAAACAGGTGGCAAGATTTTAGTTCATTGCTT 2458 Query 2458 CGAAGGTCGGAGTAGAAGCGCAACAGTAGTGCTTGCTTACCTAATGCTCCAAAAGAAGCT 2517 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2459 CGAAGGTCGGAGTAGAAGCGCAACAGTAGTGCTTGCTTACCTAATGCTCCAAAAGAACCT 2518 Query 2518 CACACTTTTAGAAGCATGGAGCAAACTGAGGAAAGTTCATAGACGAGCTCAACCGAATGA 2577 ||||| |||||||||||| |||||||||||||||||||||||||||||||||| || || Sbjct 2519 AACACTATTAGAAGCATGGGGCAAACTGAGGAAAGTTCATAGACGAGCTCAACCAAACGA 2578 Query 2578 TGGATTTGCGCGGATCTTAATAAACCTCGACAAGAAATGTCACGGGAAAGTATCAATGGA 2637 |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2579 CGGATTTGCGCGGATCTTAATTAACCTCGACAAGAAATGTCACGGGAAAGTGTCAATGGA 2638 Query 2638 GTGGAGACAGAGGAAACCGACAATGAAAGTGTGTCCGGTTTGTGGAAAGAACGCAGGTCT 2697 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2639 GTGGAGACAGAGGAAACCGACAATGAAAGTGTGTCCGGTTTGTGGTAAGAACGCAGGTCT 2698 Query 2698 AAGCAGCAGTTCTTTGAAGCTTCATCTCCAGAAATCTCACAGGAAACTGTCTTCGGGAAG 2757 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2699 AAGCAGCAGTTCTCTGAAGCTACATCTCCAGAAATCTCACAGGAAACTGTCTTCGGGAAG 2758 Query 2758 TGTTGACAGTGCAATGAACATGGAGATTCAAAAGGCTTTGGAGGCTCTTAAACTCAGCAC 2817 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2759 TGTTGACAGTGCAATGAACATGGAGATTCAAAAGGCTTTGGAGGCTCTTAAACTCAGCAC 2818 Query 2818 TGGCCGTGGCTCAAGTGCTAGTTCCAATTCTTTCCAATCTCATCCTGGTTAGAGAGTCCG 2877 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 2819 TGGCCGTGGCTCAAGCGCTAGCTCCAATTCTTTCCAATCTCATCCTGGTTAGAGATTCCG 2878 Query 2878 GTTTGGTTTTATCTATGGTTTGTCCCGGTTAAAGTCTCTCTAATCGTACATCTCTGAACA 2937 |||| ||||||||| |||||||||||||||||||||||| ||||| |||| | || | Sbjct 2879 GTTTAGTTTTATCTTTGGTTTGTCCCGGTTAAAGTCTCT--AATCGAACATATAAAAAAA 2936 Query 2938 AAAACAT--TGATCTGttttgttttgttttttACTGTAACGATCTTTGTACTTGTATACG 2995 |||| | ||||| |||| |||||||||||||||||||| ||||||||| |||||||| Sbjct 2937 AAAAAAAACTGATCCGTTTGGTTTTGTTTTTTACTGTAACTATCTTTGTAATTGTATACC 2996 Query 2996 CAAGTAAATAAAAAGCCGAAAAGCTGAATAGAAGTCACTGGGAAACGTCATAATAAGCTA 3055 ||| ||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||| Sbjct 2997 CAACTAAATAAAAAGCCGAAAAGTTGAATACAAGTCACTGGAAAACGTCACAATAAGCTA 3056 Query 3056 ATGT 3059 |||| Sbjct 3057 ATGT 3060 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117660766805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5