BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23730.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941899 jgi|Araly1|941899|scaffold_602443.1 1751 0.0
> Ahg941899 jgi|Araly1|941899|scaffold_602443.1
Length=1139
Score = 1751 bits (948), Expect = 0.0
Identities = 1084/1149 (94%), Gaps = 11/1149 (1%)
Strand=Plus/Plus
Query 32 CAGTCATTACTCTGTTTTCATATGAACACTCTTCATCCTCACAAGCAGCAACAAGAACAA 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CAGTCATTACTCTGTTTTCATATGAACACTCTTCATCCTCACAAGCAGCAACAAGAACTA 60
Query 92 GCACAACAACAAGAAGAAGCTAGATACGAATGGGATCTTTCTCTCTCCACCGTCGTATCT 151
| |||| |||||| | | ||||||||||||||||||||||||||||| |||
Sbjct 61 G---------AAGACCAAGCTAAACATGAATGGGATCTTTCTCTCTCCACCGTCGTCTCT 111
Query 152 TCCTCCTCCTCCTCCGCCTCCGACGTTATCGGAGCTATTGAATTCGATCCCACTGATAAC 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 TCCTCCTCCTCCTCCGCCTCCGACGTTATCGGAGCTATTGAATTCGATCCCACTGATAAC 171
Query 212 ATCGTCGCTACCGCCGGGATTTCAAGAAAGATTCGTTTTTACGGCCTCCCTTCTCTTTTA 271
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 172 ATCGTCGCTACCGCTGGGATATCAAGAAAGATTCGTTTTTACGGCCTCCCTTCTCTTTTA 231
Query 272 CGTAACAACGCTGTCTCCGGTACCGGAGTTTCCTTCGTCGATCAAGCCACCGCCTGCGAA 331
|||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 232 CGTACCAACGCCGTCTCCGGCACCGGAGTCTCCTTCGTCGATCAAGCCACCGCCTGCGAG 291
Query 332 TATTACATCTGTACTCCGGCGAAA-CTTAGTAGTCTCCGGTGGAGACCCGGGTCGGGCGG 390
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 292 TATTACATCTGTACGCCGGC-AAAGCTTAGTAGTCTCCGGTGGAGACCCGGGTCGGGCGG 350
Query 391 TCGGGTTATTGGGTCGGGAGATTACGACGGCGTAGTGATGGAGTACGATCTTGAGAAGAG 450
|||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 351 TCGGGTCATCGGGTCGGGAGATTACGACGGCGTAGTGACCGAGTACGATCTAGAGAAGAG 410
Query 451 GACGCCGGTATTCGAAAGGGACGAGCACGGTGGTCGTCGTGTATGGAGCGTAGATTACAC 510
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 411 GACGCCGGTATTCGAGAGGGACGAGCACGGTGGCCGTCGCGTATGGAGCGTCGATTACAC 470
Query 511 TCGTCACGGCGGCGCTTCGACGGTGGGCGCGTCGGGATCGGATGACGGGACTATGCAAGT 570
||| |||||||| ||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 471 TCGCCACGGCGGTGCTTCCTTGGTGGGAGCGTCGGGATCGGACGACGGGACTATGCAAGT 530
Query 571 ATGGGATCCGAGGTGTCCGCCGGAAGAATCTGTCGGTGTTGTACGACCGGCGGGGATTTG 630
|||||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||
Sbjct 531 ATGGGATCCGAGGTGTCCGCCGGAGGAATCTGTCAGCGTTGTACGACCGTCGGGGATTTG 590
Query 631 CCGGAGTGCTGTTTGTTGCGTCGAGTTCGATCCTTCCGGTGGACCAGCCGTGGCCGTCGG 690
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 591 CCGGAGCGCTGTTTGTTGCGTCGAGTTTGATCCTTCCGGTGGACCAGCCGTGGCCGTCGG 650
Query 691 ATGCGCTGATCGGAAAGGGTACGTTTACGATATAAGGAAACTCGTTGACCCGGCGTTGAC 750
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 651 ATGCGCTGATCGGAAAGGGTACGTGTACGATATAAGGAAACTCGTTGACCCGGCGTTGAC 710
Query 751 TTTACAAGGTCATACGAAAACGGTGTCGTATGTGAGGTTCCTCGACGGTGGGACGGTGGT 810
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 711 TTTACAAGGTCATACTAAAACGGTGTCGTATGTGAGGTTTCTCGACGGTGGTACGGTGGT 770
Query 811 GACGGCAGGTACGGACGGTTGTTTGAAGCTGTGGAGCGTGGAGGATGGGCGCGTGATTCG 870
||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 771 GACGGCAGGCACGGACGGTTGTTTGAAGTTGTGGAGCGTGGAGGACGGGCGCGTGATTCG 830
Query 871 CACGTACGAAGGGCATGTGAATAATCGGAACTTCGTGGGGTTATCTGTGTGGAGAAACGG 930
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 831 CACGTACGAAGGGCACGTGAATAATCGAAACTTCGTGGGGTTATCTGTGTGGAGAAACGG 890
Query 931 CGCGTTGTTTGGTTGTGGATCGGAAAACAACAGGGTGTTTGTGTACGATAGGAGATGGGG 990
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 891 GGCGTTGTTTGGTTGCGGATCAGAAAACAACAGGGTGTTTGTGTACGATAGGAGATGGGG 950
Query 991 GAAGCCGGTTTGGGTAGATGGGTTTGAACCAGTTGGTATGAATTCTGGTTCGGATAAGCG 1050
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 951 GAAGCCGGTTTGGGTAGATGGGTTTGAACCGGTTGGTATGAATTCTGGTTCGGATAGGCG 1010
Query 1051 GTTCGTGAGTAGCGTCTGTTGGAGGCAATCAGGTGTGGACCAGTGTACCCTAGTGGCTGG 1110
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1011 GTTCGTGAGTAGCGTCTGTTGGAGGCAATCAGGTGTGGACCAGTGCACCTTAGTGGCTGG 1070
Query 1111 AGGATCTGATGGAGTATTACAGGTTTACGTGGGCAAAAGAAAACCATAGTGTTCTTCTTA 1170
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1071 AGGATCTGATGGAGTATTACAGGTTTACGTGGGCAAAAGAAAACCATAGTATTCTTCTTA 1130
Query 1171 ATTTATCAT 1179
|||||||||
Sbjct 1131 ATTTATCAT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5