BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23750.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489237 jgi|Araly1|489237|fgenesh2_kg.6__2371__AT5G23750.1 1118 0.0
Ahg323485 jgi|Araly1|323485|fgenesh1_pm.C_scaffold_5001029 364 5e-100
> Ahg489237 jgi|Araly1|489237|fgenesh2_kg.6__2371__AT5G23750.1
Length=977
Score = 1118 bits (605), Expect = 0.0
Identities = 890/1013 (88%), Gaps = 78/1013 (8%)
Strand=Plus/Plus
Query 1 AACGAGAAACAG-A-A-CATCACTACCAAACA-TCTCCAGCTCAGTTTCTTCAA-ATAAA 55
|||||||||||| | | ||||||||||||||| | |||||||||||||||| || || |
Sbjct 1 AACGAGAAACAGAACATCATCACTACCAAACATTTTCCAGCTCAGTTTCTTGAACAT-AC 59
Query 56 AACAGTTAATCTCTCTAAAACAATTTTTTGTT-TTCTCTCTCTCTTAAATAACCAGAGAG 114
| ||||||||||||||| ||||||||||| || || || ||||| | |
Sbjct 60 AGCAGTTAATCTCTCTAGAACAATTTTTT-TTGTT-TC-CTCTC-----T---C------ 102
Query 115 TTCAGAATCATTTTGATTCTCTTTGTAATCTTTAGTTGTTGTACCTAACATCATGGCTGA 174
|| | ||| | | | | |||||| ||||||||||||||||| || | ||||||||
Sbjct 103 TT-A-AAT-A-----A--C-CATTGTAACCTTTAGTTGTTGTACCTGACGTTATGGCTGA 151
Query 175 AGAGGAACCGAAGAAGGTGACAGAGACCGTGTCGGAACCAACTCCAACACCGGAAGTTCC 234
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 152 AGAGGAACCAAAGAAGGTGACAGAGACCGTGTCAGAACCAACTCCAACACCGGAAGTTCC 211
Query 235 GGTGGAGAAACC---TGCT---GC---TG------CT--GCAG--A-----TGTTGCTCC 270
||| |||||||| |||| || || || | || | |||||||||
Sbjct 212 GGTTGAGAAACCTGTTGCTGCGGCAGATGTTACTCCTCAGGAGAAACCTGTTGTTGCTCC 271
Query 271 TCAGGAGAAGCCTGTGGCTCCACCTCCCGTTCTTCCATCTCCGGCACCGGCAGAGGAGAA 330
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 272 TCAGGAGAAGCCTGTGGCTCCACCTCCCGTTCTTCCATCTCCGGCGCCGGCGGAGGAGAA 331
Query 331 GCAAGAAGACTCTAAGGCTATTGTTCCCGTCGTCCCTAAAGAAGTAGAGGAAGAGAAGAA 390
|| ||||||||| |||||| |||||||||| ||| |||| ||||||||||||||||||||
Sbjct 332 GCTAGAAGACTCCAAGGCTCTTGTTCCCGTTGTCGCTAAGGAAGTAGAGGAAGAGAAGAA 391
Query 391 AGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGACAGAGAAGAGGATGTC 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 AGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGACAGAGAAGAGGATGTC 451
Query 451 ACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAACAAAGCTGAGAAGAA 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 ACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAACAAAGCTGAGAAGAA 511
Query 511 GCTTTCTTCAATTGGATCATGGGAGAACAACAAGAAAGCAGCTGTGGAAGCTGAGCTCAA 570
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GCTTTCTTCAATTGGGTCATGGGAGAACAACAAGAAAGCAGCTGTGGAAGCTGAGCTCAA 571
Query 571 GAAAATGGAGGAGCAATTGGAGAAGAAGAAGGCAGAGTATGTGGAGCAGATGAAGAACAA 630
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 572 GAAAATGGAGGAGCATTTGGAGAAGAAGAAGGCAGAGTATGTGGAGCTGATGAAGAACAA 631
Query 631 AATAGCTCAAATTCACAAGGAAGCAGAAGAGAAGAGAGCGATGATTGAAGCTAAGCGTGG 690
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 632 AATAGCTCAAATTCACAAGGAAGCTGAAGAAAAGAGAGCGATGATCGAAGCTAAGCGTGG 691
Query 691 AGAAGAAATTCTCAAAGCAGAGGAATTAGCAGCCAAGTACCGTGCCACTGGAACCGCTCC 750
||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 692 AGAAGAAGTTCTCAAAGCCGAGGAATTAGCTGCCAAGTACCGTGCCACTGGAACCGCTCC 751
Query 751 CAAAAAGCTTTTCGGATGCATGTGATCTCTAATCATCTCGA-TGGGGAAACAAATGAAAT 809
|||||||||||| |||||||| |||||| ||||||||||| |||| ||||| ||||| |
Sbjct 752 CAAAAAGCTTTTTGGATGCATATGATCT--AATCATCTCGAATGGG-AAACACATGAA-T 807
Query 810 ATGGTATTTGATGTAATGACGTTCTTTAGTTTGCTTAATGTGGGTTTAATATGGCAACAT 869
||||| || |||||||||||||| ||||||||||| ||| |||||||||| |||||||||
Sbjct 808 ATGGTGTT-GATGTAATGACGTT-TTTAGTTTGCTAAATATGGGTTTAATTTGGCAACAT 865
Query 870 AGAA-AGTTATAAGGTCA-A--CAT-C-TTA--TATTGATTGGGCTGCGTTTGTTAATTT 921
|||| | ||||||||||| | || | ||| ||||||||||| |||||||||| ||||
Sbjct 866 AGAATA-TTATAAGGTCATATGCAAACATTACATATTGATTGGGATGCGTTTGTTTATTT 924
Query 922 GAT-TTGTATTTGTACA--TCTTTTCATTGAAAGGCTTTCTCTTAGCTTTATG 971
|| ||||||||||||| ||||||||||||||| ||| |||||||||||||
Sbjct 925 AATATTGTATTTGTACAACTCTTTTCATTGAAAGTTTTTTTCTTAGCTTTATG 977
> Ahg323485 jgi|Araly1|323485|fgenesh1_pm.C_scaffold_5001029
Length=528
Score = 364 bits (197), Expect = 5e-100
Identities = 375/458 (82%), Gaps = 23/458 (5%)
Strand=Plus/Plus
Query 323 GAGGAGAAG-CAAGAAGACTCTAAGGCTATTGTTCCCGTCGTC-C--CTAAAGAA-GTAG 377
||||||||| | || || || || |||||||||| ||||||| | | |||||| | |
Sbjct 73 GAGGAGAAGTC-GGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCT-G 130
Query 378 AGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGAC-A 436
|||||||||||||||||| |||||| | |||||||||||| ||| |||| ||||| | |
Sbjct 131 CGGAAGAGAAGAAAGAAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTTGAG-CAA 189
Query 437 GAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAAC 496
|| |||||||| || || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 190 GATAAGAGGATATCTCTCATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAAC 249
Query 497 AAAGCTGAGAAGAAGCTTTCTTCAATTGGATCATGGGAGAACAACAAGAAAGCA-GCTGT 555
|||||| ||||||||||||||||| ||||| | ||||| |||| ||||||||| | |||
Sbjct 250 AAAGCTCAGAAGAAGCTTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAAAGCTTG-TGT 308
Query 556 GGAAGCTGAGCTCAAGAAA-ATGGAGGAGCAA-TTGG-AGAAGAAGAAGGCAGAGT-ATG 611
||||||||||| || || || ||||||||| || | || ||||| ||| || |
Sbjct 309 TGAAGCTGAGCTTAA-AATGATTGAGGAGCAACTTCTTA-AA-AAGAAAGCAC-GTTACA 364
Query 612 TGGAGCAGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCAGAAGAGAAGAGAGCGA 671
||||| ||||||||||||||||| ||||| |||||| |||| ||||||||||||||||
Sbjct 365 CAGAGCAAATGAAGAACAAAATAGCACAAATCCACAAGAAAGCTGAAGAGAAGAGAGCGA 424
Query 672 TGATTGAAGCTAAGCGTGGAGAAGAAATTCTCAAAGCAGAGGAATTAGCAGCCAAGTACC 731
||| |||||||| || |||||||| |||||||||| || ||| | || || |||||||
Sbjct 425 TGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACC 484
Query 732 GTGCCACTGGAACCGCTCCCAAA-AAGCT-TTTCGGAT 767
| ||||| ||||| ||||| || ||||| ||| ||||
Sbjct 485 GCGCCACAGGAACTGCTCC-AACGAAGCTATTT-GGAT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5