BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23770.2 Length=2027 Score E Sequences producing significant alignments: (Bits) Value Ahg894258 jgi|Araly1|894258|Al_scaffold_0006_2254 1271 0.0 Ahg489241 jgi|Araly1|489241|fgenesh2_kg.6__2375__AT5G23800.1 761 0.0 > Ahg894258 jgi|Araly1|894258|Al_scaffold_0006_2254 Length=1719 Score = 1271 bits (688), Expect = 0.0 Identities = 1005/1152 (87%), Gaps = 46/1152 (4%) Strand=Plus/Plus Query 758 GTCCTTTAGCTGCGAGGGAAAAAAGGCAAG-ACCCAACAAAACCGTTGATTTGTC-TAGT 815 |||||| |||||| || | | ||| | || ||||||||||| |||||||||| | |||| Sbjct 600 GTCCTTGAGCTGCAAGAGTAGTAAGTC-AGAACCCAACAAAATCGTTGATTTG-CGTAGT 657 Query 816 CTTAGGCCTATA---CC-AGTA--TCAG-TTGACGAGTATCAGTTGGAGGAAAACGTAGA 868 |||||||||| | || || || | |||| |||||||| | ||||||| ||||||| Sbjct 658 CTTAGGCCTACACCGCCTTCTATTTC-GATTGATGAGTATCAATCGGAGGAATACGTAGA 716 Query 869 GGTGTTTCTTGATGGTATGGGGTGGCGTCATGGACGAGTGATGGGAAGTCAAGAGCGAGC 928 |||||||| || ||||||||| |||||||| ||||||||||| | | || | | Sbjct 717 GGTGTTTCATGGTGGTATGGGATGGCGTCAAGGACGAGTGAT--G--G----GA---A-C 764 Query 929 GATAGGAACACTCTCTCAGAAATGGTATTTTGTGCGTTTGGAATCTACAAAG-AAGCAAT 987 | ||||||||||||| |||| |||| ||| || |||||||| ||| ||| Sbjct 765 --T-------CTCTCTCAGAAATTGTATACAGTGCTTTTAGAGGCTACAAAGAAAG-AAT 814 Query 988 TAACGTTCAAGCAGTCGGATCTTAGGCCTTTGAAGGTGTGGGAAGATGGCGTTTGGAAGG 1047 | ||||| || ||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 815 TGGTATTCAAACACTCGGATCTTAGGCCTTTGAAGGTTTGGGAAGATGGCATTTGGAAGA 874 Query 1048 TGTTGCAGACAAGGGAATTGTCGTTTACTCAGGGATCAGGAGATAAGACCG-GTGATTCT 1106 |||||||||||||||||| | |||| |||||| ||||||| |||||| | ||||||| Sbjct 875 TGTTGCAGACAAGGGAATCGCCGTTAACTCAGAAATCAGGATATAAGA-TGAGTGATTCA 933 Query 1107 GTGAGGAATGCAAATGAATCTGATCCACCTTTAACTCCACCTCCGGGCATAATTACACCA 1166 |||| ||||||||||||||||||||||||| ||||||||||||||||||||| || | || Sbjct 934 GTGATGAATGCAAATGAATCTGATCCACCTGTAACTCCACCTCCGGGCATAACTATAACA 993 Query 1167 CCGTTGAAACAA-ATAGAGGCTGGAACTCAAAGAAAGGCACTCTCCAAGAAGACACTTCC 1225 |||||||||||| | |||||||| ||||||||||||| || || |||||||||||||||| Sbjct 994 CCGTTGAAACAAGA-AGAGGCTGAAACTCAAAGAAAGACATTCCCCAAGAAGACACTTCC 1052 Query 1226 AAGGAATCAGAATGGCTCGGGAAACGATTCAACGCTAGAGAATGAAAATAGCGAAGATAA 1285 ||||||||||||||| || |||||||||||||| | |||||||||||||| ||||||| Sbjct 1053 AAGGAATCAGAATGGTTCAGGAAACGATTCAACACGAGAGAATGAAAATATCGAAGATGT 1112 Query 1286 CAATCGAAAGAGGAAAAGAGAAGAAAACCTTGGTTGTGTTGCTAGTGTTGAGCAAGACAA 1345 |||||||||||||||||||||||||||||| ||| || |||||||| |||| ||||||| Sbjct 1113 TAATCGAAAGAGGAAAAGAGAAGAAAACCTTTGTTCTGATGCTAGTGCTGAGGAAGACAA 1172 Query 1346 ACCAAAGGATACAACAATGGTTTTACCCTTTGAGAAGAAGTTACGAATTTGGGAGACACT 1405 | |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 1173 AGCAAAGGATACAAGAATGGTTTTGCCCTTTGAGAAGAAGTTACGAATTTGGAAGACACT 1232 Query 1406 AGAATCAATGGAGGTGTTTAAAACAGTCCCACAGAGTCCTCATTTCAGCCCATTATTGGT 1465 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1233 AGAATCAATGGAGGTGTTTAAAACAGTCCCACAAAGTCCTCATTTCAGCCCATT---GGT 1289 Query 1466 GGAGAGTAGAGAAGACTCCCGTGAAATGTCTGCGGTTGGTATGATGCTTACCTTTTTTGG 1525 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1290 GGAGAGTAGAGAAGATTCCCGTGAAATGTCTGCGGTTGGTATGATGCTTACCTTTTCTGG 1349 Query 1526 TTTACTTGATGAAGTCAAAGCTCTGCAACACAACGATCCCATAAGCTTTTTT-ATAAGCC 1584 ||||||||||||||||||||||||||||||| | ||||||||||||| || ||| ||| Sbjct 1350 TTTACTTGATGAAGTCAAAGCTCTGCAACACGATGATCCCATAAGCTCATTCGATA-GCC 1408 Query 1585 TCACTAATTC-TTTTGCCGAGTTAGAGAAACACGGGTTCAATGTAAAAGCACCTCAGTCA 1643 | | | |||| |||| || ||||||||||||||||| |||||||||||| |||||||| | Sbjct 1409 TTAATGATTCCTTTT-CCAAGTTAGAGAAACACGGGCTCAATGTAAAAGTACCTCAGTTA 1467 Query 1644 CGGATCAATAAGCTGTTGTCTCTCAGAGATAGACAATCAAAGAAAACAGAGGAACTCAAA 1703 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1468 CGGCTCAATAAGCTGTTGTCTCTCAGAGATAGACAATCAATGAAAACAGAGGAACTCAAA 1527 Query 1704 GATGCCGAGAAAGTGACCGCAGAGAAAGAGAGCGTAAAAGCTGAGAACAAACGCAAGATT 1763 | ||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||| Sbjct 1528 GGTGCCGAGAAAGTGACGGCAGAGAAAGAGAGCGTAAAGGCTGAGAACGAGCGCAAGATT 1587 Query 1764 CTTGAGCTGCAAAGGCTAAATGAAGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGT 1823 || |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1588 CTCGAGCTGCAGAGGCTGAATGAGGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGT 1647 Query 1824 GCAGCAAAGATTGTCCAACAGCTCGATGATGTGAAGCTTGAGTTTCTGGCAACAGCATCA 1883 ||| ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| Sbjct 1648 GCAACAAAGATTGTCCAACAGCTTGATGATGTGAAGCTTGAGTTTAAGGCAACTGCATCA 1707 Query 1884 GCTCCATGGTAA 1895 |||||||||||| Sbjct 1708 GCTCCATGGTAA 1719 Score = 337 bits (182), Expect = 2e-91 Identities = 282/329 (86%), Gaps = 12/329 (4%) Strand=Plus/Plus Query 382 GCATTCCTATCAAGATAGGCTCCATCGTCGAAGCTGATTATAAAGATGCGTGGGTCACTG 441 ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| Sbjct 278 GCATTCCTATCAAGATAGGCTGCATCGTTGAAGCTGATTATAAATATGCGTGGGTCACTG 337 Query 442 GTTTTGTGGTCAAAGAGATTGATG-TTGGCAAGTGTTTGGTGTGCTTTGATTCAATACCT 500 |||||||||||||||||||||||| || ||||||||||||||| ||| ||||| |||| Sbjct 338 GTTTTGTGGTCAAAGAGATTGATGATTA-CAAGTGTTTGGTGTGTTTTTATTCACCACCT 396 Query 501 GATGTTATTCTGTTTGAGAGAAAGCTTTTGAGGCCTCATCTTCAGTGGCTCGATGATAGT 560 ||| |||||| |||||||||||||||||||||||| ||||| ||||||| | ||| || Sbjct 397 GATATTATTCACTTTGAGAGAAAGCTTTTGAGGCCTTATCTTGAGTGGCTTGGTGAGAG- 455 Query 561 G-GATATACATTTTGGGATATGGTA--TCGAAA-CATTATCGAAA-GTTCTTGAGACGGT 615 | || | || |||| | || | || | | | || |||| ||||||||| |||| Sbjct 456 GAGAGACCCAGGTTGGT-TC-GGAACATC-ACGGCGTAAT-GAAAAGTTCTTGAGGCGGT 511 Query 616 TGGCTGAAGAGCCTATGTTTAGTCCTGGAACAATGGTGGAAGTGAGTTCTAAGATAAATG 675 | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 512 TAGCTGAGGAGCCTATGTTTAGTCCCGGAACAATGGTGGAAGTGAGTTCTAAGATAAATG 571 Query 676 AAGGTGAAGTCGTTTGGGTTCCTTCAATG 704 || ||||||||||||||||||| ||||| Sbjct 572 AAACTGAAGTCGTTTGGGTTCCTGCAATG 600 Score = 198 bits (107), Expect = 1e-49 Identities = 176/208 (85%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 173 TGGGAGT-GAAAGACCTTCCATGGAGGAAGGTTGTGAATTCGAAATCTATAATAAAAAGG 231 ||||||| ||| | |||||||||||||||||||||||||||||||||| | | | || || Sbjct 12 TGGGAGTGGAATG-CCTTCCATGGAGGAAGGTTGTGAATTCGAAATCTCTTACAGAATGG 70 Query 232 ATCCGAGATCT-TATCATCTTACGTTTAGAAGTCGAAATATCTTAGAAGACGTTTGGTAC 290 |||||| |||| | || | ||| || || | | | ||||||||||||| || ||||| Sbjct 71 ATCCGACATCTCT-TCGTATTATGTCTA-CA-T-G---TATCTTAGAAGACATTCGGTAC 123 Query 291 AAAGCCATCGTCGAGGCAAAACCTCCAAAGAGTCCCAAATCTAAACGCAGTGTACTCTGT 350 ||||| || |||| |||||||||||| |||| ||||||||||| |||||||||||||||| Sbjct 124 AAAGCTATTGTCGTGGCAAAACCTCCCAAGAATCCCAAATCTAGACGCAGTGTACTCTGT 183 Query 351 GTTCGGTTGCTTAAGGACGACTTCTCGA 378 ||||||||||||||||| ||||| |||| Sbjct 184 GTTCGGTTGCTTAAGGATGACTTTTCGA 211 > Ahg489241 jgi|Araly1|489241|fgenesh2_kg.6__2375__AT5G23800.1 Length=1659 Score = 761 bits (412), Expect = 0.0 Identities = 622/721 (86%), Gaps = 24/721 (3%) Strand=Plus/Plus Query 1181 AGAGGCTGGAACTCAAAGAAAGGCACTCTCCAAGAAGACACTTCCAAGGAATCAGAATGG 1240 |||||||| |||||| |||||| || || |||||||||||||| |||||||||||||||| Sbjct 957 AGAGGCTGAAACTCAGAGAAAGACATTCCCCAAGAAGACACTTTCAAGGAATCAGAATGG 1016 Query 1241 CTCGGGAAACGATTCAACGCTAGAGAATGAAAATAGCGAAGATAACAATCGAAAGAGGAA 1300 || |||||||||||||| | ||||||||||||| || ||||||||||||||| Sbjct 1017 TTCAGGAAACGATTCAACACGAGAGAATGAAAAT-----AG----CAATCGAAAGAGGAA 1067 Query 1301 AAGAGAAGAAAACCTTGGTTGTGTTGCTAGTGTTGAGCAAGACAAAC-CAAAGGATACAA 1359 |||||||||||||||| ||| |||| ||||||||||| || ||||| ||| |||||| | Sbjct 1068 AAGAGAAGAAAACCTTTGTTCTGTTTCTAGTGTTGAGGAAAACAAAGTCAA-GGATACTA 1126 Query 1360 CAATGGTTTTACCCTTTGAGAAGAAGTTACGAATTTGGGAGACACTAGAATCAATGGAGG 1419 ||| ||||| | ||||||||||||||||| ||||||| ||| ||| || |||||||||| Sbjct 1127 CAACAGTTTTGCTCTTTGAGAAGAAGTTACCAATTTGGAAGATACTTGATTCAATGGAGG 1186 Query 1420 TGTTTAAAACAGTCCCACAGAGTCCTCATTTCAGCCCATTATTGGTGGAGAGTAGAGAAG 1479 | |||||| |||||||||| |||||||||||||||||||| || ||||| |||||||| Sbjct 1187 TATTTAAAGCAGTCCCACAAAGTCCTCATTTCAGCCCATT---GGCGGAGATTAGAGAAG 1243 Query 1480 ACTCCCGTGAAATGTCTG-CGGTTGGTATGATGCTTACCTTTTT-TGGTTTACTTGATGA 1537 | ||||||||||||| || |||||||||||||||||||||||| || ||||||||| | Sbjct 1244 ATTCCCGTGAAATGT-TGGCGGTTGGTATGATGCTTACCTTTTCATG-TTTACTTGAACA 1301 Query 1538 AGTCAAAGCTCTGCAACACAACGATCCCATAAGCTTTTTTATAAGCCTCACTAATTCTTT 1597 ||||||||||||||||||| |||| |||||||| ||||||||||| | |||||| || Sbjct 1302 AGTCAAAGCTCTGCAACACGACGAGAACATAAGCTCATTTATAAGCCTTAGTAATTCCTT 1361 Query 1598 TGCCGAGTTAGAGAAACACGGGTTCAATGTAAAAGCACCTCAGTCACGGATCAATAAGCT 1657 | |||||||||||| |||||||||||||||| ||| | |||||| |||||||||||| | Sbjct 1362 TACCGAGTTAGAGACACACGGGTTCAATGTACAAGTAGCTCAGTTGCGGATCAATAAGTT 1421 Query 1658 GTTGTCTCTCAGAGATA-GACAATCAAAGAAAACAG-AGGAACTCAAAGATGCCGAGAAA 1715 |||| |||| |||| || | |||||||||||| | | | |||||||| | |||| ||||| Sbjct 1422 GTTGACTCTTAGAGGTATG-CAATCAAAGAAA-CTGGATGAACTCAATGGTGCCAAGAAA 1479 Query 1716 GTGACCGCAGAGAAAGAGAGCGTAAAAGCTGAGAACAAACGCAAGATTCTTGAGCTGCAA 1775 ||||| ||||| |||||||||||||| ||||||||| ||||||||||||| |||||||| Sbjct 1480 GTGACTGCAGATAAAGAGAGCGTAAAGGCTGAGAACGAACGCAAGATTCTCGAGCTGCAG 1539 Query 1776 AGGCTAAATGAAGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGTGCAGCAAAGATT 1835 ||||| ||||| ||||||||||||||||||||||| |||| |||||||| |||||||||| Sbjct 1540 AGGCTGAATGAGGAGATGGACAAAGAGATAGCTCAGAGTATGTCATGTGAAGCAAAGATT 1599 Query 1836 GTCCAACAGCTCGATGATGTGAAGCTTGAGTTTC-TGGCAACAGCATCAGCTCCATGGTA 1894 ||||||||||| |||||| ||||||||||||||| || |||| ||||| ||||||||||| Sbjct 1600 GTCCAACAGCTTGATGATATGAAGCTTGAGTTTCATG-CAACTGCATCGGCTCCATGGTA 1658 Query 1895 A 1895 | Sbjct 1659 A 1659 Score = 547 bits (296), Expect = 1e-154 Identities = 595/730 (82%), Gaps = 57/730 (8%) Strand=Plus/Plus Query 394 AGATAGGCTCCATCGTCGAAGCTGATTATAAAGATGCGTGGGT-CACTGGTTTTGTGGTC 452 |||||||| || ||||||| ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 257 AGATAGGCACCTTCGTCGACGCTGATTATAAAGGTGCGT-GGTGGACTGGTCTTGTAGTC 315 Query 453 AAAGAGATTGATGTTGGCAAGTGTTT-GGTGTGCTTTGATTCAATACCTGATGTTATTCT 511 |||| |||||||| || ||||| ||| |||||| ||||||||| ||||||| | |||| Sbjct 316 AAAGTGATTGATGATGACAAGT-TTTGGGTGTGTTTTGATTCACCACCTGATATCATTCA 374 Query 512 GTTTGAGAGAAAGCTTTTGAGGCCTCATCTTCAGTGGCTCGATGATAGTGGATA--TACA 569 |||||||||||||| |||||||||||||||||||||| |||||| || |||| | || Sbjct 375 GTTTGAGAGAAAGCATTTGAGGCCTCATCTTCAGTGGGTCGATG--AGAAGATATTTTCA 432 Query 570 TTTTGGGAT-AT-GGTATCGAA-AC--ATTATCGAAAGTTCTTG-AGACGGTTGGCTGAA 623 | | |||| || | ||| || || | | || | |||||||| || |||||| |||| Sbjct 433 TGGT-GGATCATACG-ATC-AACACGAAAT-TC-AGAGTTCTTGAAG-CGGTTGTCTGAG 486 Query 624 GAGCCTATGTTTAGTCCTGGAACAATGGTGGAAGTGAGTTCTAAGATAAATGAAGGTGAA 683 ||||||||||||||||||||||||||||||||| || ||||||||| | | ||||||||| Sbjct 487 GAGCCTATGTTTAGTCCTGGAACAATGGTGGAATTGTGTTCTAAGAGAGACGAAGGTGAA 546 Query 684 GTCGTTTGGGTTCCTTCAATGGTTATTAAAGAGTTTAAAGAGGATGATGAGTATAAATAT 743 || |||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||| Sbjct 547 GTGGTTTGGGTTCCTGCAATGGTTTTTAAAGAGTTTAAAGAGAATGATGAGTATAGATAT 606 Query 744 ATTGTCAAGGATAAGTCCTTTAGCT-G-CGAGG-GAAAAAAGG-CAAGACCCAACAAAAC 799 ||||||||||||| | ||||| | | | | ||| | | | || |||||||||||||||| Sbjct 607 ATTGTCAAGGATAGG-CCTTT-GATTGGC-AGGAGTTATA-GGACAAGACCCAACAAAAC 662 Query 800 CGTTGATTTGTC-TAGTCTTAGGCCTATACCAG--T---AT-CAG-TTGACGAGTATCAG 851 ||||||||| | |||||||||||||||||| | | || | | || | |||||||| Sbjct 663 GGTTGATTTG-CGTAGTCTTAGGCCTATACC-GCCTCCTATTCGGGTTAAAGAGTATCAA 720 Query 852 TTGGAGGAAAACGTAGAGGTGTTTCTTGATGGTATGGGGTGGCGTCATGGACGAGT-GAT 910 |||||||| || ||||||||| || ||||||||| || |||||||| |||||||| | | Sbjct 721 TTGGAGGATTACATAGAGGTGTATCATGATGGTATAGGATGGCGTCAAGGACGAGTTG-T 779 Query 911 GGGAAGTCAAG-AGCGAGCGATAGGAA-CACTCTCTCAGAAATGGTATTT-TGTGCGTT- 966 || || || || || ||| ||| |||| | |||||||||| ||||| | | ||| || Sbjct 780 GGAAACTCGAGGAG-GAGTGAT-GGAATCTCTCTCTCAGAGATGGTGTACAT-TGC-TTA 835 Query 967 TGGAATCTACAAAGAAGCAATTAACGTTCAAGCAGTCGGATCTTAGGCCTTTGAAGGTGT 1026 | || ||||||||||||||||||| ||||| | ||||||||||||||||||| ||||| Sbjct 836 TAGAGGCTACAAAGAAGCAATTAACATTCAAAAAATCGGATCTTAGGCCTTTGAGGGTGT 895 Query 1027 GGGAAGATGGCGTTTGGAAGGTGTTGCAGACAAGGGAATTGTCGTTTACTCAGGGATCAG 1086 ||||||||||| |||||||| | ||||| ||| ||||| ||||||||||||| Sbjct 896 GGGAAGATGGCCTTTGGAAG-------A--CAAGGAAATCATCGTTAACTCAGGGATCAG 946 Query 1087 GAGATAAGAC 1096 |||||||||| Sbjct 947 GAGATAAGAC 956 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76218580245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5