BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23850.1 Length=1900 Score E Sequences producing significant alignments: (Bits) Value Ahg941909 jgi|Araly1|941909|scaffold_602453.1 2436 0.0 Ahg485256 jgi|Araly1|485256|fgenesh2_kg.5__1248__AT3G48980.1 1000 0.0 > Ahg941909 jgi|Araly1|941909|scaffold_602453.1 Length=1675 Score = 2436 bits (1319), Expect = 0.0 Identities = 1564/1682 (93%), Gaps = 18/1682 (1%) Strand=Plus/Plus Query 53 CTTCTCCATCAGGAAGATTCCGATGAGAAACTCGCCGTCCAAGAACGGGTCGGCGGGAGG 112 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTTCTCCATCAGGAACAATCCGATGAGAAACTCGCCGTCCAAGAACGGGTCGGCGGGAGG 60 Query 113 GCATTCTCGTAC-TT-ATACAGACACAATCTGGTCTCCCTTTGTCAAGTCAGGTTTGGGA 170 |||||||||||| || || | ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 61 GCATTCTCGTACTTTCAT-C-GACACTATCTGGTCTCCCTTTGTCAAGTCCGGTTTCGGA 118 Query 171 ATATCTCCCAACAGATCCTACGCCCTAGTCTCCCTCCTCATCCTCCTCATAGTCGGCGCT 230 |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 119 ATATCTTCCAACAGATCCTATGCCCTAGTCTCCCTCTTCATCCTCCTCATAGTCGGCGCG 178 Query 231 TTTATCTCCACGCGCCTCCTCCTCG--A-CACCACCGTTCTGCTAGAGAAAAAAGCCGCG 287 ||||||||||||||||| ||||||| | ||||||||||||| |||||||| |||||||| Sbjct 179 TTTATCTCCACGCGCCTTCTCCTCGATACCACCACCGTTCTGATAGAGAAAGAAGCCGCG 238 Query 288 ACGACGACGACGACTAAAACCCAAACTCAGACGATAACCCCAAAATACCCTCGACCAACC 347 |||||||||| | |||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 239 ACGACGACGA-G--TAAAACCCAAACCCAGACGATATCCCCAAAATACCCTCGACCAACC 295 Query 348 ACGGTAATTACTCAAAGCCCTAAACCGGAGTTCACACTACACTGCTCCGCCAACGAAACC 407 |||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 296 ACGGCAATTACACAAAGCCCTACACCCGAGTTCACACTACACTGCTCCGCCAACGAAACC 355 Query 408 ACCGCGTCATGTCCGAGTAACAAATACCCGACGACAACGAGCTT-C--GAAGATGATGAT 464 ||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||| Sbjct 356 ACCGCGTCATGTCCGAGTAACAAATACCCGACGACGGCGAGCTTCCGAGAAGATGACGAT 415 Query 465 ACAAACCATCCTCCGACCGCCACGTGTCCTGATTACTTCCGTTGGATTCACGAGGATCTC 524 |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| Sbjct 416 ACAAACCATCCTCCAAACGCCACGTGTCCTGATTACTTCCGTTGGATCCACGAGGATCTC 475 Query 525 CGTCCATGGTCGAGGACGGGAATCACGAGGGAAGCATTGGAGCGAGCTAAAAAGACGGCG 584 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 476 CGTCCATGGTCGAGTACGGGAATCACGAGGGAAGCATTGGAGCGAGCCAAAAAGACGGCG 535 Query 585 ACTTTCCGGCTAGCGATCGTCGGCGGGAAAATTTACGTCGAGAAATTTCAAGATGCATTT 644 | |||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| ||| Sbjct 536 AATTTCCGGCTAGCGATCATCGACGGGAAAATTTACGTAGAGAAGTTTCAAGATGCGTTT 595 Query 645 CAGACAAGAGACGTGTTCACAATCTGGGGTTTCTTACAGCTTTTACGGAAGTACCCTGGG 704 ||||| |||||||||||||| || ||||| ||||||||||||||| | || ||||||||| Sbjct 596 CAGACGAGAGACGTGTTCACCATTTGGGGATTCTTACAGCTTTTAAGAAAATACCCTGGG 655 Query 705 AAGATTCCAGATCTCGAGCTTATGTTTGACTGCGTTGACTGGCCGGTCGTTAGAGCTACG 764 |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | Sbjct 656 AAGATTCCAGATCTCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTCGTTAAAGCTTCA 715 Query 765 GAATTCGCCGGAGCTAACGCGCCGTCGCCTCCGCCGCTGTTTCGTTACTGTGGGAATGAG 824 ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 716 GAATTCGCCGGAGCTAATGCGCCGTCGCCTCCGCCGCTGTTTCGGTACTGCGGGAATGAG 775 Query 825 GAGACGCTTGATATCGTGTTTCCTGATTGGTCCTTCTGGGGATGGGCGGAGGTGAATATA 884 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 776 GAGACGCTTGATATCGTGTTTCCTGATTGGTCCTTTTGGGGATGGGCGGAGGTGAATATA 835 Query 885 AAGCCATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATGAGAGGACTAAATGGATT 944 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 836 AAGCCATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATCAGAGGACTAAATGGATA 895 Query 945 AACAGAGAGCCGTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGACACGACAAGAT 1004 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 AACAGAGAGCCTTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGACACGACAAGAT 955 Query 1005 CTTATGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTGTATGCTCAGGAT 1064 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 956 CTTATGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTATATGTTCAGGAT 1015 Query 1065 TGGATCAAAGAATCAAAGGAAGGTTACAAGCAATCAGACTTGGCAAGCCAATGCCATCAC 1124 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1016 TGGATCAAAGAATCAAAGGAAGGCTACAAGCAATCAGATTTGGCAAGCCAATGCCATCAC 1075 Query 1125 AGATACAAGATATATATAGAAGGGTCTGCATGGTCCGTTAGCGAGAAGTACATTTTGGCG 1184 || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1076 AGGTACAAGATATATATAGAAGGGTCTGCATGGTCAGTGAGCGAGAAGTACATTTTGGCG 1135 Query 1185 TGTGACTCTGTGACTCTGCTAGTGAAACCTCATTACTATGATTTCTTTACTAGAGGTTTG 1244 ||||||||||||| |||| | |||||||||||||||||||||||||| || |||| ||| Sbjct 1136 TGTGACTCTGTGAGTCTGTTGGTGAAACCTCATTACTATGATTTCTTCACCCGAGGCTTG 1195 Query 1245 CTTCCAGCTCACCATTATTGGCCCGTTAGAGAGCACGATAAGTGCCGCTCCATCAAATTC 1304 ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 1196 CTTCCGGCTCACCATTATTGGCCCGTTAGGGAGCACGATAAGTGTCGCTCTATCAAATTT 1255 Query 1305 GCCGTTGATTGGGGTAACTCTCACATTCAAAAGGCACAGGATATTGGAAAGGCGGCCAGC 1364 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1256 GCTGTTGATTGGGGAAACTCTCACATTCAAAAGGCACAGGATATTGGAAAGGCGGCGAGC 1315 Query 1365 GATTTTATCCAACAAGACCTCAAGATGGACTATGTGTATGACTACATGTACCATCTTTTA 1424 ||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 1316 GATTTCATCCAACAAGAACTCAAGATGGACTACGTGTATGATTACATGTACCATCTTTTA 1375 Query 1425 ACCGAATACTCGAAACTCCTCCAGTTTAAACCCGAGATTCCGCGGAATGCCGTGGAGATT 1484 ||||||||||| |||||||||| ||||||||| |||||||| | |||||||||||||||| Sbjct 1376 ACCGAATACTCTAAACTCCTCCGGTTTAAACCTGAGATTCCTCAGAATGCCGTGGAGATT 1435 Query 1485 TGCTCGGAAACAATGGCATGTCTGAGGAGTGGGAATGAGCGGAAGTTCATGACAGAATCA 1544 || |||||||||||||| |||| ||| || ||||||||||||||||||||||| |||||| Sbjct 1436 TGTTCGGAAACAATGGCGTGTCCGAGAAGCGGGAATGAGCGGAAGTTCATGACGGAATCA 1495 Query 1545 CTCGTGAAGCAACCTGCGGATTCTGGTCCGTGTGCCATGCCTCCTCCTTATGATCCGGC- 1603 | || ||||| |||||||| |||||||||||||||||||| ||||| ||| ||||||| Sbjct 1496 TTTGTAAAGCACCCTGCGGAGTCTGGTCCGTGTGCCATGCCGCCTCCGTATAATCCGGCA 1555 Query 1604 TACGTATT-ACGAGGTTGTGAAGAGGAAACAGAGTACTAATATGAGAATCCTACAGTGGG 1662 | | | || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 T-C-TCTTTATGGGGTTGTGAAGAGGAAACAGAGTACTAATATGAGAATCCTACAGTGGG 1613 Query 1663 AAATGAAGTACTGGAGTAAGCAGAATCAAACCGGCTCTTGAATT-TTTCATCTTCATTTC 1721 | |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1614 AGATGAAGTACTGGAGCAAGCAGAATCAAACCGGCTCTTGAATTCTTTCATCTTCATTTC 1673 Query 1722 GG 1723 || Sbjct 1674 GG 1675 > Ahg485256 jgi|Araly1|485256|fgenesh2_kg.5__1248__AT3G48980.1 Length=1782 Score = 1000 bits (541), Expect = 0.0 Identities = 1012/1237 (82%), Gaps = 42/1237 (3%) Strand=Plus/Plus Query 481 CCGCCACGTGTCCTGATTACTTCCGTTGGATTCACGAGGATCTCCGTCCATGGTCGAGGA 540 |||||||||||||||| || ||||| ||||||||||||||||| || |||||| || || Sbjct 398 CCGCCACGTGTCCTGACTATTTCCGATGGATTCACGAGGATCTACGGCCATGGGAGAAGA 457 Query 541 C-GGGAATCACGAGGGAAGCATTGGAGCGAGCTAAAAAGACGGCGACTTTCCGGCTAGCG 599 | ||| |||||||||||||| |||||||| || || |||||||| ||||||||| || Sbjct 458 CAGGG-ATCACGAGGGAAGCCTTGGAGCGCGCCAATGCGACGGCGAATTTCCGGCTGGCA 516 Query 600 ATCGTCGGCGGGAAAATTTACGTCGAGAAATTTCAAGATGCATTTCAGACAAGAGACGTG 659 || || ||||| || ||||||||||| |||| || || |||||||| ||||| || Sbjct 517 ATTATCAACGGGAGGATCTACGTCGAGAAGTTTCGTGAGGCTTTTCAGACGAGAGATGTT 576 Query 660 TTCACAATCTGGGGTTTCTTACAGCTTTTACGGAAG-TACCCTGGG-AAGATTCCAGATC 717 ||||| |||||||| ||| ||||||| |||||| || || || ||| |||||||| |||| Sbjct 577 TTCACGATCTGGGGATTCGTACAGCTGTTACGG-AGATATCC-GGGAAAGATTCCGGATC 634 Query 718 TCGAGCTTATGTTTGACTGCGTTGACTGGCCGGTCGT-TAGAGCTACGGAATTCGCCGGA 776 ||||||| |||||||||||||||||||||||||| || || || | |||||||||||| Sbjct 635 TCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTAGTGAAG-GCGGCTGAATTCGCCGGA 693 Query 777 GCT-AACGCGCCGT-CGCCTCCGCCGCTGTTTCGTTACTGTGGGAATGAGGAGACGCTTG 834 | | | | || | |||| ||||| |||| ||||| |||| || || |||||||| | Sbjct 694 GTTGATC-AACC-TCCGCCGCCGCCATTGTTCCGTTATTGTGCTAACGACGAGACGCTCG 751 Query 835 ATATCGTGTTTCCTGATTGGTCCT-TCTGGGGATGGGCGGAGGTGAATATAAAGCCATGG 893 | || || |||||||||||||||| | ||||||||||| ||||||||||||||||||||| Sbjct 752 ACATTGTATTTCCTGATTGGTCCTAT-TGGGGATGGGCTGAGGTGAATATAAAGCCATGG 810 Query 894 GAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATGAGAGGACTAAATGGATTA-ACAGAGA 952 |||||| | ||||| ||||| ||||||||||| ||||||||||||||| || ||||||| Sbjct 811 GAGAGTCTATTGAAAGAACTTAGAGAAGGGAACCAGAGGACTAAATGGA-TAGACAGAGA 869 Query 953 GCCGTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGAC-ACGACAAGATCTTATGA 1011 || |||||||| |||||||| ||||| | ||| || ||||| | ||| ||||| |||| Sbjct 870 ACCTTATGCTTACTGGAAAGGGAATCCGACGGTTGCTGAGACGA-GACTTGATCTCATGA 928 Query 1012 AATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTGTATGCTCAGGATTGGATCA 1071 |||||||| |||| ||||| | || ||||| ||||||||||| ||||| ||| ||| Sbjct 929 AATGTAATCTCTCCGAGGAGTATGACTGGAAAGCTCGTTTGTACAAGCAGGACTGGGTCA 988 Query 1072 AAGAATCAAAGGAAGGTTACAAGCAATCAGACTTGGCAAGCCAATGCCATCACAGATACA 1131 | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct 989 AGGAATCAAAGGAAGGTTACAAGCAGTCAGACTTGGCGAGCCAATGCCATCACAGGTACA 1048 Query 1132 AGATATATATAGAAGGGTCTGCATGGTCCGTTAGCGAGAAGTACATTTTGGCGTGTGACT 1191 |||| || |||||||||||||||||||| || || |||||||||||| |||| ||||||| Sbjct 1049 AGATTTACATAGAAGGGTCTGCATGGTCGGTGAGTGAGAAGTACATTCTGGCATGTGACT 1108 Query 1192 CTGTGAC-TCTGCTAGTGAAACCTCATTACTATGATTTCTTTACTA-GAGGTTTGCTTCC 1249 | ||||| | |||| || ||||| |||||||| |||||||| || | ||||| || |||| Sbjct 1109 CGGTGACAT-TGCTGGTCAAACCACATTACTACGATTTCTTCAC-ACGAGGTATGTTTCC 1166 Query 1250 AGCTCACCATTATTGGCCCGT--TAGAGAGCACGATAAGTGCCGCTCCATCAAATTCGCC 1307 || ||||||||||||||||| | || || |||| || ||||||||||||||||||||| Sbjct 1167 AGGACACCATTATTGGCCCGTCATGGA-AG-ACGACAAATGCCGCTCCATCAAATTCGCC 1224 Query 1308 GTTGATTGGGGTAACTCT-CACATTCAAAAGGCACAGGATATTGGAAAGGCGGCCAGCGA 1366 ||||||||||| |||| | || || ||||||||||| || || || ||| ||| || || Sbjct 1225 GTTGATTGGGGCAACT-TGCATATGCAAAAGGCACAAGACATCGGGAAGAAGGCAAGTGA 1283 Query 1367 TTTTATCCAACAAGACCTCAAGATGGACTATGTGTATGACTACATGTACCATCTTTTAA- 1425 ||| | |||||||| || || |||||||||||||| || ||||||| |||||| |||| Sbjct 1284 GTTTGTGCAACAAGAACTTAAAATGGACTATGTGTACGATTACATGTTCCATCTCTTAAT 1343 Query 1426 CCGAATACTCGAAACTCCTCCAGTTTAAACCCGAGATTCCGCGGAA-TGCCGTGGAGATT 1484 || ||||||| |||||||||| ||||||||||||||| || | ||| | || ||| | Sbjct 1344 CC-AATACTCTAAACTCCTCCGGTTTAAACCCGAGATCCCTCAGAACT-CCACCGAGCTC 1401 Query 1485 TGCTCGGAAACAATGGCATGTCTGAGG-AGTGGGAATGAGCGGAAGTTCATGACAGAATC 1543 ||||| || ||||||| || | |||| | ||| |||||||||||||| |||| ||||| Sbjct 1402 TGCTCAGAGGCAATGGCGTGCCCGAGGGA-TGGAAATGAGCGGAAGTTTATGATGGAATC 1460 Query 1544 ACTCGTGAAGCAACCTGCGGATTCTGGTCCGTGTGCCATGCCTCCTCCTTATGATCCGGC 1603 ||| ||||| | || || || | ||||| || |||||||| ||||| |||||||| || Sbjct 1461 ACTTGTGAAACGCCCAGCTGAGACCGGTCCCTGCGCCATGCCGCCTCCGTATGATCCAGC 1520 Query 1604 -TACGTATTACGAGGTTGTGAAGAGGAAACAGAGTACTAATA-TGAGAATCCTACAGTGG 1661 | ||| |||| |||| |||| |||| ||||||||| | || | |||||| ||||||| Sbjct 1521 AT-CGTTTTACTCGGTTTTGAAAAGGAGACAGAGTACGACTAGT-AGAATCGAACAGTGG 1578 Query 1662 GAAA-TGAAGTACTGGAGTAAGCAGAATCAA-ACCGG 1696 || | | ||||||||||| |||||||| ||| ||||| Sbjct 1579 GAGAGT-AAGTACTGGAGGAAGCAGAA-CAAGACCGG 1613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71381119130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5