BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23920.1
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941921 jgi|Araly1|941921|scaffold_602465.1 1146 0.0
> Ahg941921 jgi|Araly1|941921|scaffold_602465.1
Length=735
Score = 1146 bits (620), Expect = 0.0
Identities = 698/736 (95%), Gaps = 3/736 (0%)
Strand=Plus/Plus
Query 28 TCTTGAAACTCCAAAAACTTTTCCAATGTCGGAAGAAATACGAGAGAAAGATCTCACCGA 87
||||||||||| | |||||||| ||||||||||||||||| ||||| | ||||| |||||
Sbjct 1 TCTTGAAACTCTAGAAACTTTTTCAATGTCGGAAGAAATAAGAGAGCATGATCTTACCGA 60
Query 88 CTCTAAACCATCTCCACCGCAACCACCACCGAAACGTGGTCTCATCAGCCGCAAAAGACA 147
||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 61 CTCTAAACCTTCTCCACCGCAAACACCACCAAAACGCGGTCTCATCAGCCGCAAAAGACA 120
Query 148 GCTTGTGTTTCTCTCTTTCATGATTTTATTAGCCGCAAAAGGACTCGTTGGGATCGGAGA 207
||| ||||||||||| |||||||| ||| ||||||||||||||||||| || ||||||||
Sbjct 121 GCTGGTGTTTCTCTCCTTCATGATATTACTAGCCGCAAAAGGACTCGTCGGAATCGGAGA 180
Query 208 AATAGCGTTTGTAATCTTGTGTTATATCTACTTGTATGAGTTTCTCTCAAGATTTGCCTT 267
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AATAGCGTTTGTAATCTTGTGTTATATCTACTTGTATGAGTTTCTTTCAAGATTTGCCTT 240
Query 268 CCCTCGCAAGCAAACAGAACAGAAGAAGAGACTCTCAAACCCTAAAAACAAACTCTTTCA 327
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCCTCGCAAGCAAACAGAGCAGAAGAAGAGACTCTCAAACCCTAAAAACAAACTCTTTCA 300
Query 328 AGCTTACTTCCTCGCCACTGCAATTATAGGCCTACTCTTCCCTCTTTGTTACATCGGAGA 387
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 AGCTTACTTCCTCGCCACTGCAATTATAGGCCTACTCTTCCCTATTTGTTACATCGGAGA 360
Query 388 TGGAATATACCGTGGAGACATTCACGGTGCTGGAGCCGCCGCACCACATCTATTTCTCCT 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 TGGAATATACCGTGGAGACATTCACGGTGCTGGAGCCGCCGCACCACATCTATTCCTCCT 420
Query 448 CTCAGGTCAAGCTTTCACAGAACCTATTGGTTTCTCTGACAAGTATTCGATGCCAATAGG 507
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 421 CTCAGGTCAAGCTTTCACAGAACCTATTGGTTTCTCCGACAAGTTTTCTATGCCAATAGG 480
Query 508 TATTCTTGGACCGGTTTTCTACAACGCTCGTAGGATTTTCGCTCTTTTGGATTGGGTTAA 567
|||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 481 TATTCTTGGACCAGTCTTCTACAACGCTCGTCGCATTTTCGCTCTTTTGGATTGGGTTAA 540
Query 568 AGCAGAATTCTCCGACACTCAACGTCCTGGTGGTCCGTTGAGATTGTACGGAGGAAGAGT 627
||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 541 AGCAGAATTCTCCGATACTCAACGTCCCGGTGGTCCGGTGAGATTATACGGAGGAAGAGT 600
Query 628 GATTGCATCGGTTAACACGGTGATGTGGTTTTATAATCTGTTTGGTCTCTTGTTGCCTGT 687
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 GATTGCATCGGTTAACACAGTGATGTGGTTCTATAATCTGTTTGGTCTCTTGTTGCCTGT 660
Query 688 GTTTCTTCCTAGGTCTTGTGAGATTTACTTCTCCGGTGATAACAAAGATGATTGAACTGA 747
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GTTTCTTCCTCGGTCTTGTGAGATTTACTTCTCCGGTGATAACAAAGATGATTGAA-TGA 719
Query 748 T-T-TGTATTTGTCTC 761
| | ||||||||||||
Sbjct 720 TATGTGTATTTGTCTC 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32633216952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5