BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24105.1

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941943 jgi|Araly1|941943|scaffold_602487.1                        361    4e-99


> Ahg941943 jgi|Araly1|941943|scaffold_602487.1
Length=233

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 220/232 (95%), Gaps = 2/232 (1%)
 Strand=Plus/Plus

Query  156  GGAGGAATAAA-CATCGAAATGTCGGGCTCGAGGCTTTTCTTCGGAGTTTCTACAATTGT  214
            ||||||| |||  || ||||||||| |||| |||||||||||||||||||||||||| ||
Sbjct  3    GGAGGAA-AAATAATTGAAATGTCGAGCTCAAGGCTTTTCTTCGGAGTTTCTACAATGGT  61

Query  215  ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACATGCTCAATCCGCAGCTCCTGCTCC  274
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  62   ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACAAGCTCAATCCGCGGCTCCTGCTCC  121

Query  275  GGCTCCAACAAGCGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT  334
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  GGCTCCAACAAGTGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT  181

Query  335  GGCTTTGGTCCTCACATATCTCATCCATTGATCCTCTTGTTAATTTAATTTT  386
            ||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  182  GGCTTTGGTCCTCACATATCTCATCCATTGATCCTTTTGTCAATTTAATTTT  233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21061885128


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5