BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24105.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value Ahg941943 jgi|Araly1|941943|scaffold_602487.1 361 4e-99 > Ahg941943 jgi|Araly1|941943|scaffold_602487.1 Length=233 Score = 361 bits (195), Expect = 4e-99 Identities = 220/232 (95%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 156 GGAGGAATAAA-CATCGAAATGTCGGGCTCGAGGCTTTTCTTCGGAGTTTCTACAATTGT 214 ||||||| ||| || ||||||||| |||| |||||||||||||||||||||||||| || Sbjct 3 GGAGGAA-AAATAATTGAAATGTCGAGCTCAAGGCTTTTCTTCGGAGTTTCTACAATGGT 61 Query 215 ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACATGCTCAATCCGCAGCTCCTGCTCC 274 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 62 ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACAAGCTCAATCCGCGGCTCCTGCTCC 121 Query 275 GGCTCCAACAAGCGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT 334 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 GGCTCCAACAAGTGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT 181 Query 335 GGCTTTGGTCCTCACATATCTCATCCATTGATCCTCTTGTTAATTTAATTTT 386 ||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 182 GGCTTTGGTCCTCACATATCTCATCCATTGATCCTTTTGTCAATTTAATTTT 233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21061885128 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5