BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24110.1 Length=1289 Score E Sequences producing significant alignments: (Bits) Value Ahg489268 jgi|Araly1|489268|fgenesh2_kg.6__2402__AT5G24110.1 1615 0.0 > Ahg489268 jgi|Araly1|489268|fgenesh2_kg.6__2402__AT5G24110.1 Length=1256 Score = 1615 bits (874), Expect = 0.0 Identities = 1027/1098 (94%), Gaps = 21/1098 (2%) Strand=Plus/Plus Query 1 ATGCAAAAATAAACATAGTAACAATACTTTAAACTA-TTTACACCACTTTAATCTTATTC 59 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGCAAAAATAAACATAGTAACAATACTTTAAACTATTTTACACCACTTTAATCTTATTC 60 Query 60 TCCACTCTTTGAACGTAATGGAGAAGAACCATAGTAGTGGAGAGTGGGAGAAGATGAAGA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCCACTCTTTGAACGTAATGGAGAAGAACCATAGTAGTGGAGAGTGGGAGAAGATGAAGA 120 Query 120 ACGAGATCAACGAGCTAATGA-TAGAAGGAAGAGACTATGCACACCAGTTTGGATCAGCT 178 | ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 121 AGGAGATCAACGAGCTAATGACT-GAAGGAAGAGACTATGCACACCAGTTTGGATCGGCT 179 Query 179 TCATCTCAAGAAACACGTGAACATTTAGCCAAAAAGATTCTTCAATCTTACCACAAGTCT 238 |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| Sbjct 180 TCATCTCAAGAAACACGTGAACATTTGGCCAAGAAGATTCTTGAATCTTACCACAAGTCT 239 Query 239 CTCACCATCATGAACTACTCCGGCGAACTTGACCAAGTTTCTCAGGGTGGAGGAAGCCCC 298 || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 240 CTAACCATCATGAACTACTCCGGCGAACTCGACCAAGTTTCTCACGGTGGAGGAAGCCCC 299 Query 299 AAGAGCGATGATTCCGATCAAGAACCACTT---GTCATCAAGAGTTCGAAGAAGTCAATG 355 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 300 AAGAGCGATGATTCCGATCAAGAACCACTTCATGTCATCAAGAGTTCCAAGAAGTCAATG 359 Query 356 CCAAGGTGGAGTTCAAAAGTCAGAATTGCCCCTGGAGCTGGTGTTGATAGAACGCTGGAC 415 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 CCAAGGTGGACTTCAAAAGTCAGAATTGCCCCTGGAGCTGGTATTGATAGAACGCTGGAC 419 Query 416 GATGGATTCAGTTGGAGAAAGTACGGCCAGAAGGATATTCTCGGAGCCAAATTTCCAAGA 475 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 GATGGATTCAGTTGGAGAAAGTACGGCCAGAAGGATATCCTCGGAGCCAAATTTCCAAGA 479 Query 476 GGATACTATAGATGCACGTATAGAAAGTCTCAAGGATGTGAAGCCACTAAACAAGTCCAA 535 ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 480 GGATACTATCGATGCACGTATAGAAAATCTCAAGGATGTGAAGCCACCAAACAAGTCCAA 539 Query 536 AGATCTGATGAAAATCAGATGCTCCTTGAGATCAGTTACCGAGGAATACATTCTTGCTCT 595 |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 540 AGATCTGACGAAAATCAGATGCTCTTTGAGATCAGTTACCGAGGAATACATTCTTGCTCC 599 Query 596 CAAGCTGCAAATGTCGGTACAA-CAATGCCGATACAAAACCTCGAACCGAACCAGACCCA 654 ||||||||||||||| || ||| || | ||| ||||| | ||||||||||||||||| || Sbjct 600 CAAGCTGCAAATGTCCGTTCAAACA-TCCCGGTACAATATCTCGAACCGAACCAGACTCA 658 Query 655 AGAACACGGAAATCTTGACATGGTAAAGGAAAGTGTAGACAACTACAATCACCAAGCACA 714 |||||||| |||||||||||| || ||||||||| ||||||||||||||||||||||||| Sbjct 659 AGAACACGAAAATCTTGACATCGTGAAGGAAAGTCTAGACAACTACAATCACCAAGCACA 718 Query 715 TTTGCATCACAACCTTCACTATCCATTGT-CATCTACCCCAAATCTAGAGAATAACAATG 773 ||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 719 TTTGCATGACAATTTTCACTATCCATTGTGC-TCTACCCCAAATCTAGAGAATAACAATG 777 Query 774 CCTATATGCTTCAAATGCGAGATCAAAACA-TCGAATATTTTGGATCTACGAGCTTCTCT 832 | |||||||||||| || ||||||| |||| | || | |||||||||||| || |||||| Sbjct 778 CGTATATGCTTCAACTGAGAGATCACAACACT-GAGTTTTTTGGATCTACAAGTTTCTCT 836 Query 833 AGTGATCTAGGAACTAGTATCAACTACAATTTTCCAGCATCTGGCTCGGCTTCTCACTC- 891 ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 837 AGTGATCTAAGAACTAATATCAACTACAATTTTCCGGCATCTGGCTCGGCTTCTCACTCT 896 Query 892 AGCATCAAACTCTCCGTCCACCGTCCCTTTGGAATCCCCGTTTGAAAGCTATGATCCAAA 951 | |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 897 A-CATCAAACTCTCCGTCCACCGTTCCTTTGGAATCCCCATTTGAAAGCTATGATCCAAA 955 Query 952 TCATCCATATGGAGGATTTGGTGGGTTCTATTCTTAGTTATCTACTTAAGGGAGGGACGG 1011 ||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 956 TCATCCATATGGAGGGTTTGGTGGGTTCTATTCTTAGT-ATCCACTTAAGGGAGGGACGG 1014 Query 1012 AACTTTTTACATGACCTCTTGATTAAAGAGAGA----GTTTT-CATAATAGCTAATCAAT 1066 ||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1015 AACTTTT-ACATGATCTCTTGATTAAAGAGAGATATAGTTTTTCATAATAGCTAATCAAT 1073 Query 1067 TTCCTATTCAAATATCCG 1084 |||| |||||||| |||| Sbjct 1074 TTCCAATTCAAATTTCCG 1091 Score = 219 bits (118), Expect = 6e-56 Identities = 152/167 (91%), Gaps = 7/167 (4%) Strand=Plus/Plus Query 1129 GCTTATTTTCAGGTCTATGTTGAAATAAATGGATTTGTACTCGTAGGTATGATCCTTGTT 1188 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1091 GCTTATTTTCAGGTCTATGTTGAAATAAATGGATTTGTACTCGTACGTATGATCCTTGTT 1150 Query 1189 ATCTAGCTTATAGTCCATGGTTTTT-ACTTTTTGCCTTATGTTGTTGTAACACATTCGAG 1247 ||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||| || Sbjct 1151 ATCTAGCTTATAGTCCATGGTTTTTTACTTTTTACCATATGTTGTTGTAACATATTTGAA 1210 Query 1248 TTCTTA-TATTGCAAATTTGAGTCT---T-CTTTTAGCTATACAATT 1289 | ||| |||||||||||||||||| | ||||||||||||| ||| Sbjct 1211 T-CTTTCTATTGCAAATTTGAGTCTAGCTTCTTTTAGCTATACTATT 1256 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48187367088 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5