BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24120.1
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489269 jgi|Araly1|489269|fgenesh2_kg.6__2403__AT5G24120.1 2809 0.0
> Ahg489269 jgi|Araly1|489269|fgenesh2_kg.6__2403__AT5G24120.1
Length=1860
Score = 2809 bits (1521), Expect = 0.0
Identities = 1754/1865 (94%), Gaps = 21/1865 (1%)
Strand=Plus/Plus
Query 56 CACAAGTGAGCTAGCTTTGAGAAAGATTCAATTTTTGAGCCTTAAGATTGTGATGGGAGT 115
|||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 1 CACAAGTGAGCTAGCTTTTCGAAAGATTCAATTTTTCAGCCTT-AGATTGTGATGGGAGT 59
Query 116 TGTGTCTATTTCAAGTTCAGCTGCAAGATCTCCACTCGGGTTGGGCAACGATCTTTTGAC 175
||||| ||||||||||||||||||||||||||| || ||||| ||| ||||||||||||
Sbjct 60 TGTGTTTATTTCAAGTTCAGCTGCAAGATCTCCGCTTGGGTTAAGCAGCGATCTTTTGAC 119
Query 176 ACATCGGTCTTCACTTAAAAAGCCATCCATTGTTGCTTTTAAAGCCGATGATTCCAGCAA 235
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 120 ACATCGGTCTTCGCTTAAGAAGCCATCCATTGTTGCGTTTAAAGCCGATGATTCGAGCAA 179
Query 236 TTCAGCTTTGATCATTCCTCCTCGTGAGCAAGTTTTGATTCCTGCTGAAAAGCATAATGA 295
||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 180 TTCAGCTATGATCATTCCTCCTCGAGAACAAGTTTTGATTCCTGCCGAAAAGCATAATGA 239
Query 296 GAAGAAGAGAGAAGTAACGAGGAGAAAGCCTTGTAAAACCCCGAAAAAACCGCTTTCCTT 355
||||||||||| |||||||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct 240 GAAGAAGAGAGTAGTAACGAGGAGGAAGCCGTGTAAAACTCCGAAAAAACCGAGTTCTTT 299
Query 356 GGAACATAATTCGGCTCCTTCGTGTTCGTTAGGAGTAGATTACAATGAAGCTGCTGCAAG 415
|||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||| ||
Sbjct 300 GGAACACAATTCGGCTCCTTCGTGTTCATTAGGAGTTGATTACTATGAAGCTGCTGCTAG 359
Query 416 ACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAGGATGATGTTGA 475
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 360 ACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAAGAGGATGTTGA 419
Query 476 AGATGGCGGCTCTAAAGCCAAAGTTTCACGGAGGAgaaaaaggaaagaaagtggtgagga 535
||||||||| || ||| | |||||||||| |||||||||||||||| | |||||||||||
Sbjct 420 AGATGGCGGTTCCAAAACGAAAGTTTCACCGAGGAGAAAAAGGAAACAGAGTGGTGAGGA 479
Query 536 gaagaaagtggttgtgaggaataatgtgaagaaggaaaaaCGTATGAGTCTTGATAAACG 595
||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 480 GAAGAAAGTTGTTGTGAGGAATAATGTGAAGAAGGAAAAGCGTTTGAGTCTTGATAAACG 539
Query 596 GATTGCTTTGAAGAGAAACGTTCAAGAGAAACCAGTCGTTGCTTCTGTTGATAAGAAAGT 655
||| |||||||||||||||||||| || |||||||| |||| ||||| ||| ||||||||
Sbjct 540 GATCGCTTTGAAGAGAAACGTTCAGGACAAACCAGTTGTTGTTTCTGCTGAGAAGAAAGT 599
Query 656 AACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTC 659
Query 716 TAATGATATAGTGAGCTTGGACTGGaaaaaaaTGAAGATACCTCCTGTTCTTTCTTCTAC 775
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 TAATGATATTGTGAGCTTGGACTGGAAAAAAATGAAGATACCTCCTGTTCTTTCTTCCAC 719
Query 776 TGAACATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTGAAAGA 835
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TGAACATGCTTGGTTGTTTAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTAAAAGA 779
Query 836 TGTATTGCAAAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGGGGAGATCAA 895
|| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 TGAATTGCATAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGAGGAGATCAA 839
Query 896 TATGACTGCGGGTGAAGTAAAAAAGAAAATCGAAATAGGTAGAGCTGCAAGAAACAAACT 955
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 TATGACCGCAGGTGAAGTAAAAAAGAAGATCGAAATAGGTAGAGCTGCAAGAAACAAACT 899
Query 956 TATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTAC 1015
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 900 TATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATATTTTCATGATTTTAC 959
Query 1016 CAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAAT 1075
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAACGGACCGAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAAT 1019
Query 1076 TGACCGCTTTGAGCCGAAAAGGAAGTTTCGTCTTTCGACTTATGGTTTGTTTTGGATTAG 1135
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 TGACCGCTTTGAGCCAAAAAGGAAGTTCCGTCTTTCGACTTATGGTTTGTTTTGGATTAG 1079
Query 1136 ACATGCCATCATACGGTCAATGACAACTTCAAACTTCACTCGTGTCCCATTTGGACTTGA 1195
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 ACATGCCATCATAAGGTCAATGACAACTTCAAATTTCACTCGTGTCCCATTTGGACTTGA 1139
Query 1196 ATCGGTTAGAGTGGAGATATAT-AAAGCAAAGACTGAGCTATGGTTTGAGATGGGAAGAC 1254
|||||||||||||||||| | | ||| ||||||||||||||| ||||||| |||||||||
Sbjct 1140 ATCGGTTAGAGTGGAGAT-TTTCAAAACAAAGACTGAGCTATTGTTTGAGCTGGGAAGAC 1198
Query 1255 CTCCAACGGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAG 1314
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTCCAACCGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAG 1258
Query 1315 TATTGAGGGCTGCAAAACCGGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAG 1374
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TATTGAGGGCTGCAAAACCCGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAG 1318
Query 1375 AATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTG 1378
Query 1435 CTCTTCTCAGGCTCGCTCTCGACGATGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGG 1494
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1379 CTCTTCTCAGGCTCGCTCTCGACGACGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGG 1438
Query 1495 TTATTCGACAGAGGTACGGTCTTGATGGAAAAGGCGACAGGACTCTAGGAGAGATAGCTG 1554
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1439 TTATTCGACAGAGATACGGTCTTGATGGGAAAGGCGACAGGACTCTAGGAGAGATAGCTG 1498
Query 1555 GAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGC 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGC 1558
Query 1615 TTAAGCATCAGGC-CAGAGTTGATTACCTTCGTCAATACATCGTCTAAAACCAAACCGAA 1673
||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1559 TTAAGCATCAGGCTC-GAGTTGATTACCTTCGTCAATACATCGTCTGAAACCAAACCGAG 1617
Query 1674 CCGAACTGAGCCGCCTCACTCAACCATTTGTGCATACTTGGTATGATTTCCCGACTTTAC 1733
||||| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1618 CCGAATTGAGC-GCCTCACTCAAGCATTTGTGCATACTTGGTATGATTTCTTGAATTTAC 1676
Query 1734 GAGATACTTCACACCCTCTTATAACCGTTGTATAGTTGTGTATGTAA-TAG---CGGAGT 1789
||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1677 GAGATACTTCAAACCCTCTTATAACCGTTGTATAGTTGTGTATGTAAGTAATATCAGAGT 1736
Query 1790 TACTTATAGCTGCGTTAAATCGATCAGTGAATCGCAATCGTTGTATTATATCATTA---- 1845
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1737 TACTTATAGCTGCGTTAAATCGAGCAGTGAATCAAAATCGTTGTATTATATCATTACTAT 1796
Query 1846 ---GT--ATACTCATACTGAAAAGTTATACATGTAAAGTTTGAGATAT-GTTATGCATTA 1899
|| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1797 ACAGTCTATACTCATACTGAAAAGTTATACATGTAAAGTTTGAGACATTGT-ATGCATTA 1855
Query 1900 TCTTC 1904
| |||
Sbjct 1856 TTTTC 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71533480110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5