BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24150.1 Length=1849 Score E Sequences producing significant alignments: (Bits) Value Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299 2353 0.0 Ahg894306 jgi|Araly1|894306|Al_scaffold_0006_2302 2025 0.0 Ahg941951 jgi|Araly1|941951|scaffold_602495.1 1808 0.0 > Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299 Length=1560 Score = 2353 bits (1274), Expect = 0.0 Identities = 1470/1564 (94%), Gaps = 15/1564 (1%) Strand=Plus/Plus Query 33 GGATATGGCCTTTACGA-ACGTTTGCCTATGGACGCTACTCGCCTTCATGCTGACTTGGA 91 |||| |||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 3 GGATGTGGCTTTTAC-ACACGTTTGTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGA 61 Query 92 CAG-TGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTGGCGGATGCGGTGGTT 150 | | ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 62 C-GCTGTTCTACGACACAAACAGGGGGAAGAAGGCGACGAAGTTGGCGGATGCGGTGGTG 120 Query 151 GAAGAGCGAGAAGA-CG-G-TGCTACTGACGTTATCATCGTTGGGGCTGGAGTAGGCGGC 207 || |||||| |||| | | |||| |||||||||||||||||||||||||||| |||||| Sbjct 121 GACGAGCGAAAAGATGGTGCTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGC 180 Query 208 TCGGCTCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGTAATAGAGAGGGAC 267 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 181 TCGGCTCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTACATATAATAGAGAGGGAC 240 Query 268 CTGAGAGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGGACGACTCATGCTC 327 ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 241 ATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGAGGACGATTCATGCTC 300 Query 328 TCTAAGCTTGGTCTTGAAGATTGTTTGGAGGGAATAGATGCCCAAAAAGCCACGGGCATG 387 ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 TCTAAGCTTGGCCTTCAAGATTGTTTGGAAGGAATAGATGCCCAAAAAGCCACGGGCATG 360 Query 388 ACAGTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGACAACAACAATTTT 447 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 GCAGTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCGGTGGACAACAACAATTTT 420 Query 448 CCTTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCAACGAT-TGCGGCA 506 |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| || Sbjct 421 CCTTTTGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACG-TCTGCGCCA 479 Query 507 AAAGGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTGATAGA 566 ||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||| Sbjct 480 AAAAGCTTCTTCTCTTCCCAATGTGCGGCTCGAAGAAGGAACGGTGAGGTCTTTGATAGA 539 Query 567 AGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGC 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGC 599 Query 627 CTTGGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGCCGGTCTCTTAA 686 ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 600 CTTTGCACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAA 659 Query 687 TGACAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAAAG-AACTGTCAGC 745 ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 660 CGACAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTACATCTC-AAGAAACTGTCAGC 718 Query 746 TTGAAGAACCCGAAAAGTTAAAGTTGATAATGTCTAAACCCTCCTTCACCATGTTGTATC 805 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 719 TTGAAGAACCGGAAAAGTTAAAATTGATAATGTCTAAACCCTCCTTCACCATGTTGTATC 778 Query 806 AAATCAGCAGCACCGACGTTCGTTGTGTTTTTGAAG-TTCTCCCCAACAACATTCCTTCT 864 ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 779 AAATCAGCAGCACCGACGTTCGTTGTGTTTTTG-AGCTTTTCCCCAACAACATTCCTTCT 837 Query 865 ATTTCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCCTCAGGTACCTTTA 924 ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| | Sbjct 838 ATTTCAAATGGTGAAATGGTTAATTTCGTGAAGAACATTATTGCTCCTCAGGTACCTTCA 897 Query 925 AAACTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATATAAAAGCCATGCCA 984 |||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 898 AAACTCCGTAAAATATTTTTGAAAGGGATCGATGAAGGAGCACATATAAAAGTCATGCCA 957 Query 985 ACAAAGAAGATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTTTATTGGGAGATGCA 1044 |||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 958 ACAAAGAAAATGTCAGCTACTTTGAGCGATAAGAAAGGAGTGATTGTATTGGGAGATGCA 1017 Query 1045 TTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTC 1104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTC 1077 Query 1105 ATTCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGCAAAAAATCTCACAA 1164 ||||||||||| ||||||||||||||||||||||| ||| |||| |||||| || || || Sbjct 1078 ATTCTACGCCGCCTTCTCCAGCCATTAAGCAACCTCGGCGATGCACAAAAAGTCACAGAA 1137 Query 1165 GTTATCAAGTCCTTTTATGATATCCGCAAGCCAATGTCAGCGACAGTTAACACGTTAGGA 1224 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1138 GTTATCAAGTCCTTTTATGATATCCGCAAGCCAATGTCAGCGACAGTTAACACATTAGGA 1197 Query 1225 AATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAAAAGAGGCAATGAGACAA 1284 |||||||| |||||||||||| ||||||| |||||| |||||||||| ||||||||||| Sbjct 1198 AATGCATTTTCTCAAGTGCTAATTGCATCAACGGACAAAGCAAAAGAAGCAATGAGACAG 1257 Query 1285 GGTTGCTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTTTGCTA 1344 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| Sbjct 1258 GGTTGCTATGATTACCTCTGTAGTGGTGGTTTTCGCACGTCAGGGATGATGGCTCTGCTC 1317 Query 1345 GGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATCC 1404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 GGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATCC 1377 Query 1405 TCCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCCTTCG-CATTTGGCATAGCCTTCG 1463 |||||||||||| | |||||||||||||||||||||||| | ||| ||||||||||| || Sbjct 1378 TCCATTGGCCATTTGCTCTCTCCATTTCCCTCTCCCCTT-GACATCTGGCATAGCCTCCG 1436 Query 1464 ACTTTTTGGTTTGGCTATGAAAATGTTGGTTCCCCATCTCAAGGCTGAAGGAGTTAGCCA 1523 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1437 ACTTTTTGGTTTAGCTACGAAAATGTTGGTTCCCCATCTAAAGGCTGAAGGAGTTAGCCA 1496 Query 1524 AATGTTGTTTCCAGTCAACGCCGCCGCGTATAGCAAAAGCTATATGGCTGCAACGGCTCT 1583 ||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| Sbjct 1497 AATGTTGTTTCCAGTCAACGCAGCCGCGTATCGTAAAAGCTATATGGCCGCAACGGCTCT 1556 Query 1584 CTAA 1587 |||| Sbjct 1557 CTAA 1560 > Ahg894306 jgi|Araly1|894306|Al_scaffold_0006_2302 Length=1557 Score = 2025 bits (1096), Expect = 0.0 Identities = 1414/1567 (90%), Gaps = 24/1567 (2%) Strand=Plus/Plus Query 33 GGATATGGCCTTTACGAACGTTTGCCTATGGACGCTACTCGCCTTCATGCTGACTTGGAC 92 |||||| || |||||| |||||| |||||||||||||||||||| ||||||||||||| Sbjct 3 GGATATCGCTTTTACGCACGTTTTTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGAC 62 Query 93 AGTGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTGGCGGATGCGGTGGTTGA 152 ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || Sbjct 63 GGTGTTCTACGTTACAAACAGGGGGAAGAAGGCAACGAAGTTGGCGGATGCGGTGGTGGA 122 Query 153 AGAGCGAGAAGACGGTGCTACTGACGTTATCATCGTTGGGGCTGGAGTAGGCGGCTCGGC 212 ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 123 AGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGC 182 Query 213 TCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGTAATAGAGAGGGACCTGAG 272 ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |||| Sbjct 183 TCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACATGAG 242 Query 273 AGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGGACGACTCATGCTCTCTAA 332 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 243 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTCTAA 302 Query 333 GCTTGGTCTTGAAGATTGTTTGGAGGGA-ATAGATGCCCAAAAAGCCACGGGCAT-GACA 390 |||||| ||| ||||||||||||| || |||||||| || |||||||||||| | | || Sbjct 303 GCTTGGCCTTCAAGATTGTTTGGA-AGACATAGATGCACAGAAAGCCACGGGCTTCG-CA 360 Query 391 GTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGACAACAACAA-TTTTCC 449 ||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||| | Sbjct 361 GTTTATAAGGATGGAAAAGAAGCAGTCGCACCTTTTCCAGTGGAAAACAACAACTTTT-C 419 Query 450 TTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCAACGATTGCGGCAAAA 509 || ||| ||||| |||||||||||||||||||||||||| ||||| | |||||| | ||| Sbjct 420 TTATGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTTGTCCAGCAATTGCGTCGAAA 479 Query 510 GGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTGATAGAAGA 569 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 480 GGCTTCTTCTCTTCCCAATGTGCGCCTCGAAGAAGGAACGGTGAAGTCTTTAATAGAAGA 539 Query 570 AAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGCCTT 629 |||||||||||||||||||||||||||||| |||| | |||||||||||||| |||||| Sbjct 540 AAAAGGAGTGATCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAAGAGCCTT 599 Query 630 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGCCGGTCTCTTAATGA 689 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 600 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGTAGGTCTCTTAATGA 659 Query 690 CAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAAAGAACTGTCAG-CTTG 748 ||||||||||||| ||||||| |||| ||||||||| ||||| ||||| |||| | |||| Sbjct 660 CAACAATGCGGAGATTCTGTCGTACCTAGTTGGTTTCATCTCCAAGAATTGTC-GACTTG 718 Query 749 AAGAACCCGAAAAGTTAAAGTTGATAATGTCTAAACCCTCCTTCACCATGTTGTATCAAA 808 ||||||||||||| ||| | |||||| |||||||||| || ||||||||| | ||||||| Sbjct 719 AAGAACCCGAAAACTTACATTTGATATTGTCTAAACCTTCTTTCACCATGGTATATCAAA 778 Query 809 TCAGCAGCACCGACGTTCGTTGTGTTTTTGAAGTTCTCCCC-AACAACATTCCTTCTATT 867 | |||||||| ||||||||||||| |||||| ||||||||| || || ||||||||||| Sbjct 779 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAA-AATTTTCCTTCTATT 837 Query 868 TCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCCTCAGGTACCTTTAAAA 927 |||||||||||||| |||||||| ||||||| ||||| | ||||||||||||| |||| Sbjct 838 GCAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAA 897 Query 928 CTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATATAAAAGCCATGCCAACA 987 ||||||||||||||||||||||| || |||| |||| ||| ||||||| | ||||| || Sbjct 898 CTCCGCAAAATATTTTTGAAAGGAATAAATGAGGGAGCACAGATAAAAGTCGTGCCAGCA 957 Query 988 AAGAAG-ATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTTTATTGGGAGATGCATT 1046 ||| | ||| |||||| ||| ||| |||||||||| |||||| |||||||||||||||| Sbjct 958 AAG-CGCATGTCAGCTAGTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATT 1016 Query 1047 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTCAT 1106 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1017 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTACTGTCTGACATTCTCAT 1076 Query 1107 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGCAAAAAA-TCTCACAAG 1165 ||||||||||||||||||||||||||||||||| ||| |||| || ||| ||||| ||| Sbjct 1077 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTCGGCGATGCT-AACAAAGTCTCAGAAG 1135 Query 1166 TTATCAAGTCCTTTTAT-GATATCCGCAAGCCAATGTCAGCGACAGTTAACACGTTAGGA 1224 ||||||| || |||||| | ||| |||||||||||||||||||| |||||||| |||||| Sbjct 1136 TTATCAATTCTTTTTATAG-TATTCGCAAGCCAATGTCAGCGACGGTTAACACATTAGGA 1194 Query 1225 AATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAAAAGAGGCAATGAGACAA 1284 |||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct 1195 AATGCATTTTCTCAAGTGCTAATTGGATCAACGGACGAAGCAAAAGAGGCAATGAGACAG 1254 Query 1285 GGT-TGCTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTTTGCT 1343 ||| | |||||||||||| | |||||||||||||||||||||||||||||||||| |||| Sbjct 1255 GGTGT-CTATGATTACCTTTGTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTCTGCT 1313 Query 1344 AGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATC 1403 ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 1314 CGGCGGCATGAATCCTCGTCCGCTCTCTCTTATCTATCATCTCTGTGCTATCACTATATC 1373 Query 1404 CTCCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTTCG 1463 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1374 CTCTATTGGCCATCTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCT-CA 1432 Query 1464 A-CTTTTTGGTTTGGC-TATGAAAATGTTGGTTCCCCATCTCAAGGCTGAAGGAGTTAGC 1521 | |||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1433 AGCTTTTTGGTTTGGCCT-TGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGC 1491 Query 1522 CAAATGTTGTTTCCAGTCAAC-GCCGCCGCGTATAGCAAAAGCTATATGGCTGCAACGGC 1580 |||||||||||||||| ||| || ||||||||| |||||||||||||||| ||||| || Sbjct 1492 CAAATGTTGTTTCCAG-CAAATGCAGCCGCGTATCGCAAAAGCTATATGGCCGCAACCGC 1550 Query 1581 TCTCTAA 1587 ||||||| Sbjct 1551 TCTCTAA 1557 > Ahg941951 jgi|Araly1|941951|scaffold_602495.1 Length=1591 Score = 1808 bits (979), Expect = 0.0 Identities = 1399/1602 (87%), Gaps = 28/1602 (2%) Strand=Plus/Plus Query 18 CTAGCTT-ATAGA-TAAGGATATGGCCTTTACGAACGTTTGCCTATGGACGCTACTCGCC 75 |||| || ||||| | |||||||||||||||| ||||||| |||||||| |||||||| Sbjct 1 CTAG-TTAATAGATTTGGGATATGGCCTTTACGCACGTTTGTTTATGGACGGTACTCGCC 59 Query 76 TTCATGCTGACTTGGACAGTGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTG 135 ||| |||||| ||||| ||||||||||| || |||||| ||| ||||||||| | ||| Sbjct 60 TTCGCGCTGACCTGGACGGTGTTCTACGTTACCAACAGGAAGAAAAAGGCGACGGAATTG 119 Query 136 GCGGATGCGGTGGTTGAAGAGCG-AGAAGACGGTGCTACTGACGTTATCATCGTTGGGGC 194 |||||||||| | || ||| | |||| |||||||| ||||||| |||||||| ||||| Sbjct 120 GCGGATGCGGCAGCAGAGGAGAGAAGAA-ACGGTGCTTCTGACGTCATCATCGTCGGGGC 178 Query 195 TGGAGTAGGCGGCTCGGCTCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGT 254 ||| || || ||||||||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct 179 TGGTGTCGGTGGCTCGGCTCTTGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGT 238 Query 255 AATAGAGAGGGACCTGAGAGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGG 314 || ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 239 GATTGAGAGGGACATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGG 298 Query 315 ACGACTCATGCTCTCTAAGCTTGGTCTTGAAGATTGTTTGGAGGGAATAGATGCCCAAAA 374 |||||||||||| ||||||||||| ||| |||||||| |||| || |||||||||||||| Sbjct 299 ACGACTCATGCTTTCTAAGCTTGGCCTTCAAGATTGTCTGGATGGTATAGATGCCCAAAA 358 Query 375 AGCCACGGGCATGACAGTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGA 434 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 359 AGCCACGGGCATGGCAGTTTATAAGGACGGCAAAGAAGCAGTCGCATCTTTTCCGGTGGA 418 Query 435 CAACAACAATTTTCCTTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCA 494 ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 419 CAATAACAATTTTCCTTACGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCA 478 Query 495 ACGAT-TGCGGCAAAAGGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGA 553 | | | |||| |||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 479 AAG-TCTGCGCCAAAAGGCTTCTTCTCTTTCTAGTGTGCGCCTGGAAGAAGGAACGGTGA 537 Query 554 AGTCTTTGATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCG 613 |||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 538 AGTCGTTAATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAACAAAGCAGGCG 597 Query 614 AAGAAACAACAGCCTTGGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTC 673 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 598 AAGAAACAACAGCATTGGCGCCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTC 657 Query 674 GCCGGTCTCTTAATGACAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAA 733 | |||||||| || || ||||||||||||||| |||| ||||||||||||| ||||| | Sbjct 658 GTCGGTCTCTAAACGATAACAATGCGGAGGTTTTGTCTTACCAAGTTGGTTACATCTCGA 717 Query 734 AGAACTGTCAGCTTGAAGAACCCGAAAAG-TTAAAGTTGATAATGTCTAAACCCTCCTTC 792 |||| |||| |||||| || |||||||| || | |||||||||||||||||||||| | Sbjct 718 AGAATTGTCGGCTTGACGATCCCGAAAACCTTCAT-TTGATAATGTCTAAACCCTCCTCC 776 Query 793 ACCATGTTGTATCAAATCAGCAGCACCGACGTTCGTTGTGTTTTTGAAG-TTCTCCCCAA 851 | ||||||||| ||| | |||||||| || |||||||||| |||||| | || ||||| | Sbjct 777 ATCATGTTGTACCAACTAAGCAGCACTGATGTTCGTTGTGGTTTTGA-GCTTTTCCCCGA 835 Query 852 CAACATTCCTTCTATTTCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCC 911 ||| ||||||||||| |||| ||||||||||||||||||| |||||||||| | ||||| Sbjct 836 CAATTTTCCTTCTATTGCAAAAGGTGAAATGGCTACTTTCGCGAAGAACACTCTAGCTCC 895 Query 912 TCAGGTACCTTTAAAACTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATAT 971 |||||||||| |||||| ||||||||||| |||||||| | ||||| |||| ||| || Sbjct 896 TCAGGTACCTCCAAAACTTCGCAAAATATTCTTGAAAGGTCTAGATGAGGGAGCACACAT 955 Query 972 AAAAGCCATGCCAACAAAGAAG-ATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTT 1030 |||||| | ||| ||||| | |||||||||||||| ||| | || |||||||||||| Sbjct 956 AAAAGCGGTTCCAGCAAAGC-GCATGACAGCTACTTTAAGCAATAAAAAAGGAGTGATTG 1014 Query 1031 TATTGGGAGATGCATTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTAT 1090 | |||||||||||||||||||||||||||||| || |||| |||||||||||||||||| Sbjct 1015 TGTTGGGAGATGCATTCAACATGCGTCATCCATCAGTCGCGGCTGGAATGATGGTTTTAT 1074 Query 1091 TATCTGACATTCTCATTCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGC 1150 | ||||| |||||||||||||| ||||||||||||||| |||||||||| || |||| Sbjct 1075 TGTCTGATATTCTCATTCTACGTCGTCTTCTCCAGCCACTAAGCAACCTCGGTGATGC-- 1132 Query 1151 AAA-AAA-TCTCACAAGTTATCAAGTCCTTTTAT-GATATCCGCAAGCCAATGTCAGCGA 1207 ||| ||| ||||| |||| || |||||||||||| | |||||||||||||||||||||| Sbjct 1133 AAACAAAGTCTCAGAAGTCATTAAGTCCTTTTATAGC-ATCCGCAAGCCAATGTCAGCGA 1191 Query 1208 CAGTTAACACGTTAGGAAATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAA 1267 | || ||||| ||||||| |||||| |||||||||||| ||||||| ||||||||||||| Sbjct 1192 CGGTGAACACATTAGGAACTGCATTTTCTCAAGTGCTAATTGCATCAACGGACGAAGCAA 1251 Query 1268 AAGAGGCAATGAGACAAGGTTGCTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAG 1327 |||| ||||||||||| ||||||||||||||||| | |||||| || ||||||||||||| Sbjct 1252 AAGAAGCAATGAGACAGGGTTGCTATGATTACCTTTGTAGTGGCGGTTTTCGCACGTCAG 1311 Query 1328 GGATGATGGCTTTGCTAGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTAT 1387 ||||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||| | Sbjct 1312 GGATGATGGCTCTACTAGGTGGCATGAATCCTCGTCCGATCTCTCTCATTTATCATCTCT 1371 Query 1388 GTGCTATCACTCTATCCT-CCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCC-TTCG 1445 | |||||||| ||| | | ||||||||||||| |||||||||||||| || |||| |||| Sbjct 1372 GCGCTATCACACTA-CATTCCATTGGCCATCTTCTCTCTCCATTTCCTTC-CCCCATTCG 1429 Query 1446 CATTTGGCATAGCCTTC-GACTTTTTGGTTTGGCTATGAAAATGTTGGTTCCCCATCTCA 1504 ||||||||||||||| | | ||||||||||| ||| |||||||||||||||||||||||| Sbjct 1430 CATTTGGCATAGCCT-CAGGCTTTTTGGTTTAGCTTTGAAAATGTTGGTTCCCCATCTCA 1488 Query 1505 AGGCTGAAGGAGTTAGCCAAATGTTGTTTCCAGTCAA-CGCCGCCGCGTATAGCAAAAGC 1563 ||||||| ||||||||||| ||||||||||| | ||| ||| ||||| ||| |||||||| Sbjct 1489 AGGCTGAGGGAGTTAGCCAGATGTTGTTTCCTG-CAAACGCAGCCGCATATCGCAAAAGC 1547 Query 1564 TATATGGCTGCAACGGCTCTCTAAAACACTGGTGCTTTAAAC 1605 |||||||| || | | | | |||| || || |||| ||||| Sbjct 1548 TATATGGCCGCGTCTGTTTTTTAAA-CATTGATGCTCTAAAC 1588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69438516635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5