BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24160.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894306 jgi|Araly1|894306|Al_scaffold_0006_2302 2289 0.0
Ahg941951 jgi|Araly1|941951|scaffold_602495.1 1862 0.0
Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299 1794 0.0
Ahg326701 jgi|Araly1|326701|fgenesh1_pm.C_scaffold_6001921 508 4e-143
> Ahg894306 jgi|Araly1|894306|Al_scaffold_0006_2302
Length=1557
Score = 2289 bits (1239), Expect = 0.0
Identities = 1455/1560 (93%), Gaps = 11/1560 (1%)
Strand=Plus/Plus
Query 38 ATATGGCTTTTACGCACGTTTGTT-TATGGACGTTAGTCGCCTTCGTGCTGACGTGGACG 96
|||| |||||||||||||||| || |||||||| || |||||||||||||||| ||||||
Sbjct 5 ATATCGCTTTTACGCACGTTT-TTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGACG 63
Query 97 GTGTTCTACCTTACCAACATGAAGAAGAAGGCGACGGATTTGGCTGATACGGTGGCT-GA 155
||||||||| |||| |||| | ||||||||| ||| | ||||| ||| |||||| | ||
Sbjct 64 GTGTTCTACGTTACAAACAGGGGGAAGAAGGCAACGAAGTTGGCGGATGCGGTGG-TGGA 122
Query 156 GGATCAAAAAGACGGTGCTGCTGACGTCATTATCGTCGGGGCTGGTGTAGGTGGTTCGGC 215
|| | ||||||||||||||||||||| || ||||| |||||||| || || || |||||
Sbjct 123 AGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGC 182
Query 216 TCTCGCATATGCTCTTGCTAAGGATGGGCGTCGAGTACATGTGATCGAGAGGGACATGAG 275
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 183 TCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACATGAG 242
Query 276 AGAACCAGAAAGAATGATGGGTGAGTTTATGCAACCTGGCGGACGACTCATGCTTTCTAA 335
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 243 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTCTAA 302
Query 336 ACTTGGCCTTCAAGATTGCTTGGAAGACATAGATGCACAGAAAGCCACGGGTTTGGCAGT 395
||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 303 GCTTGGCCTTCAAGATTGTTTGGAAGACATAGATGCACAGAAAGCCACGGGCTTCGCAGT 362
Query 396 TTATAAAGATGGAAAAGAAGCAGACGCACCTTTTCCAGTGGATAACAACAATTTTTCTTA 455
|||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 363 TTATAAGGATGGAAAAGAAGCAGTCGCACCTTTTCCAGTGGAAAACAACAACTTTTCTTA 422
Query 456 TGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACAACTGCGTCGAAAGGC 515
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 423 TGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTTGTCCAGCAATTGCGTCGAAAGGC 482
Query 516 TTTTTCTCTTTCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTACTAGAAGAAAA 575
|| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 483 TTCTTCTCTTCCCAATGTGCGCCTCGAAGAAGGAACGGTGAAGTCTTTAATAGAAGAAAA 542
Query 576 AGGAGTGGTCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAACAGCCTTGGC 635
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 543 AGGAGTGATCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAAGAGCCTTGGC 602
Query 636 ACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAATGATGA 695
|||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 603 ACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGTAGGTCTCTT-A--ATGA 659
Query 696 CAACAATGCTGAGATTATGTCGTACATAGTTGGTTACATCTCAAAGAATTGTCGGCTTGA 755
||||||||| |||||| |||||||| ||||||||| |||||| ||||||||||| |||||
Sbjct 660 CAACAATGCGGAGATTCTGTCGTACCTAGTTGGTTTCATCTCCAAGAATTGTCGACTTGA 719
Query 756 AGAACCCGAAAAGC-TACACTTGATATTGTCTAAACCATCTTTCACCATGGTATACCAAA 814
|||||||||||| | |||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 720 AGAACCCGAAAA-CTTACATTTGATATTGTCTAAACCTTCTTTCACCATGGTATATCAAA 778
Query 815 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAAAATTTTCCTTCTATTG 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAAAATTTTCCTTCTATTG 838
Query 875 CAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAAC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAAC 898
Query 935 TCCGCAAAATATTTTTGAAAGGTATAGATGAGGGAGCACACATAAAAGTGGTGCCGGCAA 994
|||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||
Sbjct 899 TCCGCAAAATATTTTTGAAAGGAATAAATGAGGGAGCACAGATAAAAGTCGTGCCAGCAA 958
Query 995 AGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATTCA 1054
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGCGCATGTCAGCTAGTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATTCA 1018
Query 1055 ATATGCGTCATCCAGTTGTTGCATCTGGAATGATGGTTTTACTGTCGGACATTCTCATTC 1114
| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 ACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTACTGTCTGACATTCTCATTC 1078
Query 1115 TACGCCGTCTTCTTCAGCCATTAAGCAACCTCGGCGATGCAAACAAAGTCTCAGAAGTTA 1174
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 TACGCCGTCTTCTCCAGCCATTAAGCAACCTCGGCGATGCTAACAAAGTCTCAGAAGTTA 1138
Query 1175 TCAATTCCTTTTAT-GATATCCGCAAGCCAATGTCGGCGACGGTTAACACATTGGGAAAT 1233
||||||| |||||| | ||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1139 TCAATTCTTTTTATAG-TATTCGCAAGCCAATGTCAGCGACGGTTAACACATTAGGAAAT 1197
Query 1234 GCATTTTCTCAAGTACTAATTGGATCAACGGATGAAGCAAAAGAGGCAATGAGACAGGGT 1293
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1198 GCATTTTCTCAAGTGCTAATTGGATCAACGGACGAAGCAAAAGAGGCAATGAGACAGGGT 1257
Query 1294 GTCTATGATTACCTTTGTAGTGGCGGGTTTCGTACGTCAGGGATGATGGCTCTGCTCGGC 1353
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1258 GTCTATGATTACCTTTGTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTCTGCTCGGC 1317
Query 1354 GGCATGAATCCTCGTCCTCTCTCTCTCGTCTATCATCTTTGTGCCATCACTCTATCCTCC 1413
||||||||||||||||| |||||||| |||||||||| ||||| |||||| |||||||
Sbjct 1318 GGCATGAATCCTCGTCCGCTCTCTCTTATCTATCATCTCTGTGCTATCACTATATCCTCT 1377
Query 1414 ATTGGCCAACTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTCAAGCTT 1473
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATTGGCCATCTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTCAAGCTT 1437
Query 1474 TTTGGTTTGGCCATGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGCCAAATG 1533
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTTGGTTTGGCCTTGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGCCAAATG 1497
Query 1534 TTGTTTCCAGCAAATGCAGCCGCGTATCACAAAAGCTATATGGCTGCAACCACTCTCTAA 1593
|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 1498 TTGTTTCCAGCAAATGCAGCCGCGTATCGCAAAAGCTATATGGCCGCAACCGCTCTCTAA 1557
> Ahg941951 jgi|Araly1|941951|scaffold_602495.1
Length=1591
Score = 1862 bits (1008), Expect = 0.0
Identities = 1403/1594 (88%), Gaps = 26/1594 (2%)
Strand=Plus/Plus
Query 23 AATAGATTTGGTTATATATGGCTTTTACGCACGTTTGTTTATGGACGTTAGTCGCCTTCG 82
||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 7 AATAGATTTGG---GATATGGCCTTTACGCACGTTTGTTTATGGACGGTACTCGCCTTCG 63
Query 83 TGCTGACGTGGACGGTGTTCTACCTTACCAACATGAAGAAGAAGGCGACGGATTTGGCTG 142
|||||| ||||||||||||||| ||||||||| |||||| ||||||||||| ||||| |
Sbjct 64 CGCTGACCTGGACGGTGTTCTACGTTACCAACAGGAAGAAAAAGGCGACGGAATTGGCGG 123
Query 143 ATACGGTGGCTGAGGATCA-AA-AAGACGGTGCTGCTGACGTCATTATCGTCGGGGCTGG 200
|| ||| || ||||| | || || |||||||| |||||||||| ||||||||||||||
Sbjct 124 ATGCGGCAGCAGAGGA-GAGAAGAA-ACGGTGCTTCTGACGTCATCATCGTCGGGGCTGG 181
Query 201 TGTAGGTGGTTCGGCTCTCGCATATGCTCTTGCTAAGGATGGGCGTCGAGTACATGTGAT 260
||| ||||| |||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 182 TGTCGGTGGCTCGGCTCTTGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGAT 241
Query 261 CGAGAGGGACATGAGAGAACCAGAAAGAATGATGGGTGAGTTTATGCAACCTGGCGGACG 320
||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||
Sbjct 242 TGAGAGGGACATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGGACG 301
Query 321 ACTCATGCTTTCTAAACTTGGCCTTCAAGATTGCT-TGGAAGACATAGATGCACAGAAAG 379
||||||||||||||| ||||||||||||||||| | |||| | |||||||| || ||||
Sbjct 302 ACTCATGCTTTCTAAGCTTGGCCTTCAAGATTG-TCTGGATGGTATAGATGCCCAAAAAG 360
Query 380 CCACGGGTTTGGCAGTTTATAAAGATGGAAAAGAAGCAGACGCACCTTTTCCAGTGGATA 439
||||||| ||||||||||||| || || |||||||||| |||| ||||||| ||||| |
Sbjct 361 CCACGGGCATGGCAGTTTATAAGGACGGCAAAGAAGCAGTCGCATCTTTTCCGGTGGACA 420
Query 440 ACAACAATTTTTCTTATGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAAC 499
| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAACAATTTTCCTTACGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAA- 479
Query 500 A-ACTGCGTCGAAAGGCTTTTTCTCTTTCCAATGTGCGCCTGGAAGAAGGAACGGTGAAG 558
| ||||| | |||||||| ||||||||| | ||||||||||||||||||||||||||||
Sbjct 480 AGTCTGCGCCAAAAGGCTTCTTCTCTTTCTAGTGTGCGCCTGGAAGAAGGAACGGTGAAG 539
Query 559 TCTTTACTAGAAGAAAAAGGAGTGGTCAAAGGAGTGACATACAAGAATAAAGAAGGCGAA 618
|| ||| ||||||||||||||||| ||||||||||||||||||| || |||| |||||||
Sbjct 540 TCGTTAATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAACAAAGCAGGCGAA 599
Query 619 GAAACAACAGCCTTGGCACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGT 678
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAAACAACAGCATTGGCGCCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGT 659
Query 679 CGGTCTCTTAATGATGACAACAATGCTGAGATTATGTCGTAC-ATAGTTGGTTACATCTC 737
|||||||| || ||| | | |||||| ||| || |||| ||| | |||||||||||||||
Sbjct 660 CGGTCTCTAAACGAT-A-A-CAATGCGGAGGTTTTGTCTTACCA-AGTTGGTTACATCTC 715
Query 738 AAAGAATTGTCGGCTTGAAGAACCCGAAAAGCTACACTTGATATTGTCTAAACCATCTTT 797
||||||||||||||||| || |||||||| || || |||||| |||||||||| || |
Sbjct 716 GAAGAATTGTCGGCTTGACGATCCCGAAAACCTTCATTTGATAATGTCTAAACCCTCCTC 775
Query 798 CACCATGGTATACCAAATAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGA 857
|| |||| | |||||| ||||||||||||| |||||||||||||||||| || |||||||
Sbjct 776 CATCATGTTGTACCAACTAAGCAGCACTGATGTTCGTTGTGGTTTTGAGCTTTTCCCCGA 835
Query 858 AAATTTTCCTTCTATTGCAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCC 917
|||||||||||||||||||| ||||||||| |||||||| |||||| ||| ||| |||
Sbjct 836 CAATTTTCCTTCTATTGCAAAAGGTGAAATGGCTACTTTCGCGAAGAACACTCTAGCTCC 895
Query 918 TCAGGTACCTCCAAAACTCCGCAAAATATTTTTGAAAGGTATAGATGAGGGAGCACACAT 977
|||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 896 TCAGGTACCTCCAAAACTTCGCAAAATATTCTTGAAAGGTCTAGATGAGGGAGCACACAT 955
Query 978 AAAAGTGGTGCCGGCAAAGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGT 1037
||||| ||| || ||||||||||||||| ||||||||||||| || ||||| ||||||||
Sbjct 956 AAAAGCGGTTCCAGCAAAGCGCATGACAGCTACTTTAAGCAATAAAAAAGGAGTGATTGT 1015
Query 1038 ATTGGGAGATGCATTCAATATGCGTCATCCAGTT-GTTGCATCTGGAATGATGGTTTTAC 1096
||||||||||||||||| |||||||||||| | || || |||||||||||||||||
Sbjct 1016 GTTGGGAGATGCATTCAACATGCGTCATCCA-TCAGTCGCGGCTGGAATGATGGTTTTAT 1074
Query 1097 TGTCGGACATTCTCATTCTACGCCGTCTTCTTCAGCCATTAAGCAACCTCGGCGATGCAA 1156
|||| || |||||||||||||| |||||||| |||||| ||||||||||||| |||||||
Sbjct 1075 TGTCTGATATTCTCATTCTACGTCGTCTTCTCCAGCCACTAAGCAACCTCGGTGATGCAA 1134
Query 1157 ACAAAGTCTCAGAAGTTATCAATTCCTTTTAT-GATATCCGCAAGCCAATGTCGGCGACG 1215
|||||||||||||||| || || ||||||||| | ||||||||||||||||| ||||||
Sbjct 1135 ACAAAGTCTCAGAAGTCATTAAGTCCTTTTATAGC-ATCCGCAAGCCAATGTCAGCGACG 1193
Query 1216 GTTAACACATTGGGAAATGCATTTTCTCAAGTACTAATTGGATCAACGGATGAAGCAAAA 1275
|| |||||||| |||| ||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 1194 GTGAACACATTAGGAACTGCATTTTCTCAAGTGCTAATTGCATCAACGGACGAAGCAAAA 1253
Query 1276 GAGGCAATGAGACAGGGT-GTCTATGATTACCTTTGTAGTGGCGGGTTTCGTACGTCAGG 1334
|| ||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||
Sbjct 1254 GAAGCAATGAGACAGGGTTG-CTATGATTACCTTTGTAGTGGCGGTTTTCGCACGTCAGG 1312
Query 1335 GATGATGGCTCTGCTCGGCGGCATGAATCCTCGTCCTCTCTCTCTCGTCTATCATCTTTG 1394
|||||||||||| || || ||||||||||||||||| |||||||| | |||||||| ||
Sbjct 1313 GATGATGGCTCTACTAGGTGGCATGAATCCTCGTCCGATCTCTCTCATTTATCATCTCTG 1372
Query 1395 TGCCATCACTCTATCCT-CCATTGGCCAACTGCTCTCTCCATTTCCCTCTCCCC-TTCGC 1452
|| ||||| ||| | | |||||||||| || |||||||||||||| || |||| |||||
Sbjct 1373 CGCTATCACACTA-CATTCCATTGGCCATCTTCTCTCTCCATTTCCTTC-CCCCATTCGC 1430
Query 1453 ATTTGGCATAGCCTCAAGCTTTTTGGTTTGGCCATGAAAATGTTGGTTCCCAATCTCAAA 1512
|||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||
Sbjct 1431 ATTTGGCATAGCCTCAGGCTTTTTGGTTTAGCTTTGAAAATGTTGGTTCCCCATCTCAAG 1490
Query 1513 GCTGAAGGAGTTAGCCAAATGTTGTTTCCAGCAAATGCAGCCGCGTATCACAAAAGCTAT 1572
||||| ||||||||||| ||||||||||| ||||| |||||||| |||| ||||||||||
Sbjct 1491 GCTGAGGGAGTTAGCCAGATGTTGTTTCCTGCAAACGCAGCCGCATATCGCAAAAGCTAT 1550
Query 1573 ATGGCTGCAACCACTCTCTAAACTTTGATGCTCT 1606
||||| || | | | ||||| ||||||||||
Sbjct 1551 ATGGCCGCGTCTGTTTTTTAAACATTGATGCTCT 1584
> Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299
Length=1560
Score = 1794 bits (971), Expect = 0.0
Identities = 1375/1569 (88%), Gaps = 32/1569 (2%)
Strand=Plus/Plus
Query 41 TGGCTTTTACGCACGTTTGTTTATGGACGTTAGTCGCCTTCGTGCTGACGTGGACGGTGT 100
|||||||||| ||||||||| |||||||| || |||||||||||||||| |||||| |||
Sbjct 8 TGGCTTTTACACACGTTTGTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGACGCTGT 67
Query 101 TCTACCTTACCAACATGAAGAAGAAGGCGACGGATTTGGCTGATACGGTGGCT-GAGGAT 159
||||| || |||| | ||||||||||||| | ||||| ||| |||||| | || ||
Sbjct 68 TCTACGACACAAACAGGGGGAAGAAGGCGACGAAGTTGGCGGATGCGGTGG-TGGACGAG 126
Query 160 CAAAAAGA-CG-G-TGCTGCTGACGTCATTATCGTCGGGGCTGGTGTAGGTGGTTCGGCT 216
| |||||| | | |||||||||||| || ||||| |||||||| || || || ||||||
Sbjct 127 CGAAAAGATGGTGCTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGCT 186
Query 217 CTCGCATATGCTCTTGCTAAGGATGGGCGTCGAGTACATGTGATCGAGAGGGACATGAGA 276
||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||
Sbjct 187 CTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTACATATAATAGAGAGGGACATGAGA 246
Query 277 GAACCAGAAAGAATGATGGGTGAGTTTATGCAACCTGGCGGACGACTCATGCTTTCTAAA 336
|||||||| |||||||||||||||||||||||||| || |||||| ||||||| |||||
Sbjct 247 GAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGAGGACGATTCATGCTCTCTAAG 306
Query 337 CTTGGCCTTCAAGATTGCTTGGAA-GACATAGATGCACAGAAAGCCACGGGTTTGGCAGT 395
||||||||||||||||| |||||| || |||||||| || ||||||||||| |||||||
Sbjct 307 CTTGGCCTTCAAGATTGTTTGGAAGGA-ATAGATGCCCAAAAAGCCACGGGCATGGCAGT 365
Query 396 TTATAAAGATGGAAAAGAAGCAGACGCACCTTTTCCAGTGGATAACAACAATTTTTCTTA 455
|||||| || ||||||||||||| |||| ||||||| ||||| |||||||||||| |||
Sbjct 366 TTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCGGTGGACAACAACAATTTTCCTTT 425
Query 456 TGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACAACTGCGTCGAAAGGC 515
||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||
Sbjct 426 TGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACGTCTGCGCCAAAAAGC 485
Query 516 TTTTTCTCTTTCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTT-ACTAGAAGAAA 574
|| ||||||| |||||||||| || |||||||||||||||| |||||| | |||||||||
Sbjct 486 TTCTTCTCTTCCCAATGTGCGGCTCGAAGAAGGAACGGTGAGGTCTTTGA-TAGAAGAAA 544
Query 575 AAGGAGTGGTCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAACAGCCTTGG 634
|||||||| ||||||||||||||||||| |||| | ||||||||||||||||||||| |
Sbjct 545 AAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGCCTTTG 604
Query 635 CACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAATGATG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 605 CACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAACGA-- 662
Query 695 ACAACAATGCTGAGATTATGTCGTAC-ATAGTTGGTTACATCTCAAAGAAT-TGTCGGCT 752
||||||||| ||| || |||| ||| | ||||||||||||||||| ||| |||| |||
Sbjct 663 -CAACAATGCGGAGGTTCTGTCATACCA-AGTTGGTTACATCTCAA-GAAACTGTCAGCT 719
Query 753 TGAAGAACCCGAAAAGCTACACTTGATATTGTCTAAACCATCTTTCACCATGGTATACCA 812
||||||||| |||||| || | |||||| |||||||||| || ||||||||| | || ||
Sbjct 720 TGAAGAACCGGAAAAGTTAAAATTGATAATGTCTAAACCCTCCTTCACCATGTTGTATCA 779
Query 813 AATAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAA-AATTTTCCTTCTA 871
||| |||||||| ||||||||||||| ||||||| || ||||| || || |||||||||
Sbjct 780 AATCAGCAGCACCGACGTTCGTTGTGTTTTTGAGCTTTTCCCC-AACAACATTCCTTCTA 838
Query 872 TTGCAAATGGTGAAATG-TCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCA 930
|| |||||||||||||| | || |||| ||||||| | ||| | ||||||||||||| ||
Sbjct 839 TTTCAAATGGTGAAATGGT-TAATTTCGTGAAGAACATTATTGCTCCTCAGGTACCTTCA 897
Query 931 AAACTCCGCAAAATATTTTTGAAAGGTATAGATGAGGGAGCACACATAAAAGTGGTGCCG 990
|||||||| ||||||||||||||||| || ||||| |||||||| |||||||| ||||
Sbjct 898 AAACTCCGTAAAATATTTTTGAAAGGGATCGATGAAGGAGCACATATAAAAGTCATGCCA 957
Query 991 GCAAAGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCA 1050
||||| ||| || ||||||| ||| | |||||||| |||||||||||||||||||||
Sbjct 958 ACAAAGAAAATGTCAGCTACTTTGAGCGATAAGAAAGGAGTGATTGTATTGGGAGATGCA 1017
Query 1051 TTCAATATGCGTCATCCAGTTGTTGCATCTGGAATGATGGTTTTACTGTCGGACATTCTC 1110
||||| ||||||||||||| | ||||||||||||||||||||| | || |||||||||
Sbjct 1018 TTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTC 1077
Query 1111 ATTCTACGCCGTCTTCTTCAGCCATTAAGCAACCTCGGCGATGCA-AACAAAGTCTCAGA 1169
||||||||||| ||||| ||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1078 ATTCTACGCCGCCTTCTCCAGCCATTAAGCAACCTCGGCGATGCACAA-AAAGTCACAGA 1136
Query 1170 AGTTATCAATTCCTTTTATGATATCCGCAAGCCAATGTCGGCGACGGTTAACACATTGGG 1229
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1137 AGTTATCAAGTCCTTTTATGATATCCGCAAGCCAATGTCAGCGACAGTTAACACATTAGG 1196
Query 1230 AAATGCATTTTCTCAAGTACTAATTGGATCAACGGATGAAGCAAAAGAGGCAATGAGACA 1289
|||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1197 AAATGCATTTTCTCAAGTGCTAATTGCATCAACGGACAAAGCAAAAGAAGCAATGAGACA 1256
Query 1290 GGGT-GTCTATGATTACCTTTGTAGTGGCGGGTTTCGTACGTCAGGGATGATGGCTCTGC 1348
|||| | |||||||||||| |||||||| || ||||| ||||||||||||||||||||||
Sbjct 1257 GGGTTG-CTATGATTACCTCTGTAGTGGTGGTTTTCGCACGTCAGGGATGATGGCTCTGC 1315
Query 1349 TCGGCGGCATGAATCCTCGTCCTCTCTCTCTCGTCTATCATCTTTGTGCCATCACTCTAT 1408
||||||||||||| |||||||| |||||||| |||||||||| ||||| ||||||||||
Sbjct 1316 TCGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTAT 1375
Query 1409 CCTCCATTGGCCAACTGCTCTCTCCATTTCCCTCTCCCCTTCG-CATTTGGCATAGCCTC 1467
||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1376 CCTCCATTGGCCATTTGCTCTCTCCATTTCCCTCTCCCCTT-GACATCTGGCATAGCCTC 1434
Query 1468 A-AGCTTTTTGGTTTGGCCATGAAAATGTTGGTTCCCAATCTCAAAG-CTGAAGGAGTTA 1525
| ||||||||||| || | |||||||||||||||| |||| |||| ||||||||||||
Sbjct 1435 CGA-CTTTTTGGTTTAGCTACGAAAATGTTGGTTCCCCATCT-AAAGGCTGAAGGAGTTA 1492
Query 1526 GCCAAATGTTGTTTCCAG-CAAATGCAGCCGCGTATCACAAAAGCTATATGGCTGCAACC 1584
|||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||
Sbjct 1493 GCCAAATGTTGTTTCCAGTCAAC-GCAGCCGCGTATCGTAAAAGCTATATGGCCGCAACG 1551
Query 1585 ACTCTCTAA 1593
||||||||
Sbjct 1552 GCTCTCTAA 1560
> Ahg326701 jgi|Araly1|326701|fgenesh1_pm.C_scaffold_6001921
Length=1512
Score = 508 bits (275), Expect = 4e-143
Identities = 1107/1495 (74%), Gaps = 111/1495 (7%)
Strand=Plus/Plus
Query 61 TTATGGACG-TTAGTCGCCTTCGTGCTGACGTGGACGGTGTT-CTACCTTACCAACATGA 118
||||||||| || |||||||||| ||||| |||| ||| || | |||| | ||| ||||
Sbjct 16 TTATGGACGCTT-CTCGCCTTCGTTCTGACATGGATGGTTTTAC-ACCTCATCAAGATGA 73
Query 119 AGAAGAAGGCGA-CGGATTTGGCT-GATACGGTGGCTGAGGATCA-AAAAGACGGTGCTG 175
||||| ||| | || | | | | || | | ||| || || | | ||| |||||
Sbjct 74 AGAAGGCGGCAACCGAAGAT-G-TAGAGGCAGAGGCAGAAGA-GAGATCAGATGGTGCCA 130
Query 176 CTGACGTCATTATCGTCGGGGCTGGTGTAGGTGGTTCGGCTCTCGCATATGCTCTTGCTA 235
|||| ||||| || || || || ||||| | || | |||| || ||||||||||| |
Sbjct 131 CTGATGTCATCATTGTTGGAGCGGGTGTTGCAGGCGCTTCTCTTGCTTATGCTCTTGCGA 190
Query 236 AGGATGGGCGTCGAGTACATGTGATCGAGAGGGACATGAGAGAACCAGAAAGAATGATGG 295
||||||| || ||||| |||||||| ||||||||| ||| ||| ||| ||||| | ||||
Sbjct 191 AGGATGGACGACGAGTTCATGTGATAGAGAGGGACTTGAAAGAGCCACAAAGATTCATGG 250
Query 296 GTGAGTTTATGCAACCTGGCGGACGAC-TCATGCTT-TCTAAACTTGGCCTTC-AAGATT 352
| ||| |||||||| | || || || | ||||| || | | ||||||| || ||||||
Sbjct 251 GAGAGCTTATGCAAGCGGGAGGCCG-CTTCATG-TTAGCCCAGCTTGGCC-TCGAAGATT 307
Query 353 GCTTGGAAGACATAGATGCAC-AGAAAGCCACGGGTTTGGCAGTTTATAAAGATGGAAAA 411
| ||||| || ||||| || | || |||||| | |||||| |||| || || ||||||
Sbjct 308 GTTTGGAGGAGATAGACGCTCAAG-AAGCCAAGTCCTTGGCAATTTACAAGGACGGAAAA 366
Query 412 GAAGCAGAC-GCACCTTTTCCAGTGGATAACAACAATTTTTCTTATGAACC-TTCTGCTC 469
| || ||| ||||||||| ||| |||| || ||| || ||||||| || | |
Sbjct 367 CACGC-GACATTGCCTTTTCCA---GATGACAAGAAGTTTCCTCATGAACCAGTC-GGTA 421
Query 470 GATCTTTTCAC--AATGGCCGAT-TCGTCCAACAACTGCGTCGAAAGGCTTTTTCTCTTT 526
|| ||||| || |||||||| | | || |||| | || | ||| || |||||||
Sbjct 422 GA-CTTTT-ACGTAATGGCCG-TCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTTA 478
Query 527 CCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTACTAGAAGAAAAAGGAGTGGTCA 586
|||||| | | |||||||||| || |||||||||| | |||||||| |||||||| |
Sbjct 479 GCAATGTACAATTAGAAGAAGGAATGGCGAAGTCTTTAATTGAAGAAAATGGAGTGGTTA 538
Query 587 AAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAACAGCCTTGGCACCTCTCACTG 646
||||||||||||||||||| | | |||||| |||||||| ||||| |||||||||||||
Sbjct 539 AAGGAGTGACATACAAGAACAGCGCAGGCGAGGAAACAACGGCCTTTGCACCTCTCACTG 598
Query 647 TGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAATGATGACAACAATGCTG 706
| |||||||| ||||| || ||||||||||| ||||| | | | || | ||| |||
Sbjct 599 TCGTATGCGATGGTTGTTATTCAAACCTTCGCCGGTCAC-T--CG-TG--GATAATTCTG 652
Query 707 A-G-A-TTATGTCGTACATAGTTGGTTACATCTCAAAGAATTGTCGGCTTGAAGAACCCG 763
| | | | | |||||||| || ||||| || | |||||| | || ||||||| | ||
Sbjct 653 AGGAAGTGCTCTCGTACATGGTGGGTTATGTCACGAAGAATAGCCGACTTGAAG-ATCC- 710
Query 764 A-AAAG-CTACA-CTTGATATTGTCTAAACCATCTT--TCACCATGGTATACCAAATAAG 818
| | || ||||| ||| ||||| |||||||| | || || | |||| |||||||
Sbjct 711 ACATAGTCTACATCTT-ATATTTTCTAAACC-T-TTGGTCTGTGTTATATATCAAATAAC 767
Query 819 CAG-CACTGACGTTCGTTGTGGT-TTTGAGGTTCTCC-CCGAAAATTTTCCTTCTATTGC 875
||| | ||| ||||||||| || || |||| || | || | | |||||||||||||
Sbjct 768 CAGTGA-TGAAGTTCGTTGT-GTAGCCGAAGTTC-CCGCTGATAGTATTCCTTCTATTGC 824
Query 876 AAATGGTGAAATGTCTACTTTCATGAAG-AATACTATAGTTCCTCAGGTACCT-C--C-- 929
||||| ||||||||||| ||| | ||| ||| | || | ||||||| ||||| | |
Sbjct 825 GAATGGCGAAATGTCTACCTTCCTCAAGAAAT-CAATGGCTCCTCAGATACCTGCAACTG 883
Query 930 -AAAACTCCGCAAAATATTTTTGAAAGGTATAGATG-AGG--GAGCACACATAAAAGTGG 985
||| || || | |||||||||||||| ||||| | ||| | || | |||||| |
Sbjct 884 GAAATCTTCGTGAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAA-T-C 941
Query 986 TGC--CGGCAAAGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGG 1043
| || |||| | ||| || | | || | | |||| ||| |||||||| |||||
Sbjct 942 AACAGCGACAAAAAGTATGTCAGCAAGATTGTGTGATAAGAGAGGAGTGATTGTGTTGGG 1001
Query 1044 AGATGCATTCAATATGCGTCATCC-AGTTGTTGCATCTGGAATGATGGTTT-TACTGTCG 1101
|||||||||||||||||||||||| | | | || || || ||||||||| | || |||
Sbjct 1002 AGATGCATTCAATATGCGTCATCCTA-TAATCGCGTCAGGGATGATGGTTGCT-CTCTCG 1059
Query 1102 GACATTCT-CATTCTACGCCGTCTTCTTCAG-CCATTAAGC-AACCTCGGCGATGCAAAC 1158
|||||| | |||||||||| ||| || ||| |||||| | ||||||||| || | ||
Sbjct 1060 GACATT-TGCATTCTACGCAATCTACT-CAGACCATTAC-CTAACCTCGGCAATACTAAG 1116
Query 1159 AAAGTCTCAGA-AGTTATCAATTCCTTTTATGAT-ATCCGCAAGCCAATGTCGGCGACGG 1216
|| ||||| || | || |||| |||||||| || ||||||||||||||||| ||||| |
Sbjct 1117 AAGGTCTCTGATA-TTGTCAAGTCCTTTTAC-ATCATCCGCAAGCCAATGTCAGCGACCG 1174
Query 1217 TTAACACATTGGGAA--ATGCATTTTCTCAAGTACTAATTGG-ATCAACGGATGAAGCAA 1273
| ||||| ||| | || | ||||| ||||| || ||| | ||||||| |||||||
Sbjct 1175 TAAACACGCTGGCTAGTAT-C-TTTTCGCAAGTGCTTGTTGCTA-CAACGGACGAAGCAA 1231
Query 1274 AAGAGGCAATGAGACAGGG-TGTCTATGA-TTACCTTTG-TAGTGGCGGGTTTCGTAC-G 1329
||||| |||| |||| || || || | | |||||| | | |||| | ||| || |
Sbjct 1232 GAGAGGGAATGCGACAAGGCTG-CT-TCAATTACCTA-GCTCGTGGAGATTTTAAAACAG 1288
Query 1330 TCAGGGATGATGGCTCTGCTCGGCGGCATGAATCCTCGTCCTCTCT-CTCTCGTC-TATC 1387
| || |||||| || | ||||| |||||||| |||| || || | |||| ||| | ||
Sbjct 1289 CC-GGAATGATGACTATTCTCGGAGGCATGAACCCTCACCCCCT-TACTCTAGTCCT-TC 1345
Query 1388 ATCTTTGT-GCCATCACTCTATCC-TCCATTGGCCAACT-GCTCTCTCCATTTCCCTCTC 1444
||||| || |||||||| || | | ||||| ||||| || ||| ||||| ||||| || |
Sbjct 1346 ATCTT-GTAGCCATCACCCT-TACGTCCATGGGCCA-CTTGCTTTCTCCCTTTCCTTCGC 1402
Query 1445 CCCTTCGCATTTGGCATAGCCTCA-AGCTTTTTGGTTTGGCCATGAAAATGTTGG 1498
| ||||| ||||||||||||||| | ||||||| | ||| || |||||||||
Sbjct 1403 CTGTTCGCTTTTGGCATAGCCTCAGA-CTTTTTGCCTGGGCTTTGCAAATGTTGG 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5