BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24280.1
Length=4826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894322 jgi|Araly1|894322|Al_scaffold_0006_2318 3513 0.0
Ahg351449 jgi|Araly1|351449|fgenesh1_pg.C_scaffold_6002042 638 0.0
> Ahg894322 jgi|Araly1|894322|Al_scaffold_0006_2318
Length=4824
Score = 3513 bits (1902), Expect = 0.0
Identities = 2149/2268 (95%), Gaps = 17/2268 (1%)
Strand=Plus/Plus
Query 805 GTCTAACTCTCTTCTCTGTCAGGCGTACTTTGGTGTCTTCTAAGACAAAAGAGTCCAAGA 864
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 764 GTCTAACTCTCTTCTCTGTCAGACGTACTTTGGTGTCTTCTAAGACAAAAGATTCCAAGA 823
Query 865 AAGTGTTCACTTTGCAATTCAAGAAAGAAGCATTGATTGACAATCGGTCTATCGTGGGAA 924
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 824 AAGTGTTCACTTTGCAATTCAAGAAAGAAGCCTTGATTGACAATCGGTCTATCTTGGGAA 883
Query 925 AAAACTGGAAGACTGATGGTGGCATGAGGGACCCGTCGGAGGAGGAAATGAAGTTATCCC 984
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 884 AAAACTGGAAGACTGATGGTGGTATGAGGGACCCGTCGGAGGAGGAAATGGAGTTATCGC 943
Query 985 CTCATGGAAGCTTTACAAAGGTCGAGATATTTGAATCAGAATTTGACATCTCAAAGATCT 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 944 CTCATGGAAGCTTTACAAAGGTCGAGATATTTGAATCAGAATTTGACATCTCAAAAATAT 1003
Query 1045 ATCAACTCCAGTGCAGGCTCAAGGATATTTACTTTCCTTACATCCAGTTTTG-CCTTGCG 1103
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||
Sbjct 1004 ATCAACTCCAGTGCAGGCTTAAGGATATTTACTTTCCTTACATCCAGTTCTGCCCTT-CG 1062
Query 1104 ACCATTTTCTTGTGTGATGAACTCTCCAAAACTGGGAGGACTGAAAGGCCTGTGGCGTTT 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1063 ACCATTTTCTTGTGTGATGAACTCTCCAAAACTGGGAGGACTGAAAGGCCTGTAGAGTTT 1122
Query 1164 CAGGTCAATGGGGAAGATTTGGCTGAGATAGCAGGTGGAGAGGTTGCCATTACCAACCTA 1223
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1123 CAGGTCAATGGGGAAGATTTAGCTGAGATAACAGGTGGAGAGGTTGCTATTACCAACCTA 1182
Query 1224 CACTCCAAGGGTCAAtttttttCATTTCAGATTCGATTCACTCTTTTCGGTGGGAAAAGA 1283
||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||| |
Sbjct 1183 CACTCCAAGGGTCAAGTATATTCATTTCAGATTCGATTCACTCTTACCGGTGGGAAAATA 1242
Query 1284 AAAGGGACAGCTCAAGAGGCAAATGCTCGCCTCAAGTTTGTTTATTTTCCAATCGTCCAG 1343
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 AAAGGGACAACTCAAGAGGCAAATGCTCGCCTCAAGTTTGTTTATTTTCCAATCGTCCAG 1302
Query 1344 GGAAAAGAAAGCATTGAGAAAATTTTGCAGAGTTTAGAAGAGGAAGGATGCAAAGTTTCT 1403
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1303 GGAAAAGAAAGCATTGATAAAATTTTGGAGAGTTTAGAAGAGGAAGGATGCAAAGTTTCT 1362
Query 1404 GAAAGCTTCCAGACTTTTGGCCGTGTTTCATTAAGAAGGCTTGGTCGCTTACTTCCAGAA 1463
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1363 GAAAGCTTCCAGACTTTTGGTCGTGTTTCAGTAAGAAGGCTTGGTCGTTTACTTCCAGAA 1422
Query 1464 GTCCGTTGGGATTCAATACCGTTTATGCAAAGAGGAAACAGAGCTTCTACTTTGCAGAAA 1523
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1423 GTCCGTTGGGATTCAATACCGTTTATGCAAAGAGGAAACAGAGCGTCTACTTTGCAGAAA 1482
Query 1524 AGCTGCCGAAGAGTAAAATGCTTTGTTGATTTGGATGCTGGTTTTAGCCCAACGCCCTCC 1583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GGCTGCCGAAGAGTAAAATGCTTTGTTGATTTGGATGCTGGTTTTAGCCCAACGCCCTCC 1542
Query 1584 AAAACTGACCTTGCAAGCCAAAATCCTTTCTCAGTGGCTTTAAGAAACTTTGGTAGTAAG 1643
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1543 AAAACTGACCTTGCGAGCCAAAATCCTTTCTCAGTAGCTTTAAGAAACTTTGGTAGTAAA 1602
Query 1644 TCGACGGAGAAAGAGAAGGATGATGATGTCAATATTGTGATTCATAGAGAAGGAAAATCT 1703
||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 1603 TCGACAGAGAAAGAGAAGGATGATGACGTCACTATTGTGACTCATAGAGAAGGAAAATCT 1662
Query 1704 GTCAGCTATGCGCATCTGGAGGAAAAATATCAAGAATGGGTTTTGGAGATGCATAATACC 1763
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1663 GTCAGCTATGCGCATCTGGATGAAAAATATCAAGAATGGGTTTTGGAGATGCATAATACC 1722
Query 1764 CATGATGAAGAAGCTGCATCGGGT-CTAGATGAAGCTGTCCTCATTGTTGGATCCTTGGA 1822
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 1723 CATGATGAAGAAGCTGCATCAGGTGC-AGATGAAGCTGTCCTCATTGTTGGATCCTTGGA 1781
Query 1823 TAAAAAGGCCCTTGGCATTTTGCGTGATGCTGTGAGGGTGCATAAGGAAGTTAGGAGAAA 1882
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1782 TAAAAAGGCCCTTGGCATTTTGCGTGATGCTGTGAGGGTGCACAAGGAAGTTACGAGAAA 1841
Query 1883 AGAAAAAACATGGAAACGTGGTCAGAATATAAAGATTCTGAGAGGAGCTTATGCTGGGAT 1942
|| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1842 AGGAATGTCATGGAAACGTGGTCAGAATATAAAGATTCTGAAAGGAGCTTATGCTGGGGT 1901
Query 1943 TCACAATAACAATGTGTATGCCACCATTGACTATTTCCTAATAGAAGGGTTTGAGGACGA 2002
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1902 TCACAATAACAATGTGTACGCCACCATTGACTATTTCCTAATTGAAGGGTTTGAGGACGA 1961
Query 2003 AGCAGGCGGGGATACTCGGATTTTATGCAGGCCTATCGATCGCCCTGAGAACGAGGGATG 2062
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1962 AGCAGGCGGGGATACTCGGATTTTATGCAGGCCAATCGATCGCCCTGAGAATGAGGGATG 2021
Query 2063 CAAGCTTTCAATCATCGATGGAATTTCGAAACTGGAAGTTCAGAGTTCTTTATCTTTACC 2122
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2022 CAAGCTTTCAATCATCGATGGAATTTCAAAACTGGAAGTTCAGAGTTCTTTATCTTTACC 2081
Query 2123 GATCACTATAATCGACTCTGGAAAGTGCCTTCCTGTAGATGCGAACGAATGGAATAGAAA 2182
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 2082 GATCACTATAATCGACTCTGGAAAGTGCCTACATGTAGATGCAAACGAATGGAATAGAAA 2141
Query 2183 ACTTGATAAGCAACAGGAAAAAGCACCGTCAAAAATTGATTTGCTGGATGAAAGAGATTG 2242
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2142 ACTTGATAAGCAACAGGAAAAGGCACCGTCAAAAATTGATTTGCTGGATGAGAGAGATTG 2201
Query 2243 CAGAGAATTGAAGATTGATGGGGAACTACCCATTGGCAATTCTGTGCGTGCTGGGAAAGC 2302
|||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2202 CAGAGAATTGAAAATTGATGGGGAACTACCGGTTGGTGATTCTGTGCGTGCTGGGAAAGC 2261
Query 2303 T-CCTCCGAAACAGATTGTTGCAGTTGTCCGACCTGCATGCTTCACGTCTTTAACTCCGT 2361
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2262 TACC-CCGAAACAGATTGTTGCAGTTGTCCGACCTGCATGCTTCACGTCTTCAACTCCGT 2320
Query 2362 CAAAGAAGTTGGACCAGAAAAATATCGTTAAGATGGATGGGGAAGAAATGGTCATGGTAG 2421
| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2321 CGAAGAAGTTGGACCAGAAACATATTGTTAAGATGGATGGGGAAGAAATGGTCATGGTAG 2380
Query 2422 TAAAATTGAAATCAAGTGATAAGAATAT-AT-C-T-T-----CGCAGCGCTTGTTTCCTA 2472
||||||||||||| |||||||||||| | | | | | |||||||| |||||||||
Sbjct 2381 TAAAATTGAAATCGAGTGATAAGAATGTCAAACCTGTGTGTTCGCAGCGCATGTTTCCTA 2440
Query 2473 CATCCCGTAAAGGGATTAGTGGTCTTTACATCTTCTCACTTGGGTCCAAGTTTCCAAACC 2532
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2441 CATCCCGTAAAGGGATCAGTGGTCTTTACATCTTCCCACTTGGGTCCAAGTTTCCAAACC 2500
Query 2533 TTTTCAAGAAAGCTGGCACCTACAATTTTTCTTTCTCCATTGGCAA-TTCGATTAAGTGC 2591
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 2501 TTTTCAAGAAAGCTGGCACTTACAAGTTTTCTTTCTCCATTGGCAACTT-GATTAAGTGC 2559
Query 2592 AACAAAACGGTGGTTGTTAGACCTTCTTCTAAGGCAGCAAGGTGGGAACTTGACGATAAT 2651
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 2560 AACAAAACGGTGGTTGTTAGACCTTGTTCTAAGGCAGCAAAGTGGGAACTTGACGTTAAT 2619
Query 2652 CTGGAGTCCCTTCCGTGCAATGTTCGGGTGGGTTCTTCTCTTCCACCTTTCCGTATCGCT 2711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2620 CTGGAGTCCCTTCCGTGCAATGTTCGGGTGGGTTCTTCTCTTCCACCTTTCCGTATCGCT 2679
Query 2712 TGCTTTGATAAGTACAAAAACAAGATTCCGTTCACTTCTGTTCCAAGTCTGGAAGTTGAA 2771
||||||||| ||||||||||| |||||| |||| ||||||||||||| ||||||||||||
Sbjct 2680 TGCTTTGATGAGTACAAAAACCAGATTCTGTTCTCTTCTGTTCCAAGCCTGGAAGTTGAA 2739
Query 2772 TTGGAAGCTAGCCCTGGATTCTTAATCAAAATTGACAAACTTGAGACCAACCTGATAAAT 2831
||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 2740 CTGGAAGCTAACCCTGGATTCTTAATCAAAATTGATAAAATTGAGGCCAACCTGATAAAT 2799
Query 2832 GATGGATTAATTCTTAAAATCGAGAATATGCTCGTTGAGACTGATGAGTTAGACCAGATC 2891
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2800 GATGGATCAATTCTTAAAATCGAGAATATGCTCGTTGAGACTGATGGGTTAGACCAGATC 2859
Query 2892 CGACCTAATTATGAAGCAACGTTAGAGATACGTGCAATGGACAATCCTTTTTCTGTCTCG 2951
|||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||
Sbjct 2860 CGACCTAATTATGAAGCAACACTAGAGATACGAGCAATGGACAAGCCTTTCTCTGTCTCG 2919
Query 2952 GTTCCTTGTAAAGTTAATCCCGGGCCTCTGAAACGAGTTGCTGTGAATAATCCCAAGGCT 3011
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2920 GTTCCTTGTATAGTTAATCCTGGGCCTCTGAAACGAGTTGCTGTGAATAATCCCGAGGCT 2979
Query 3012 CTGGAAAATTTGCTTCCAGATTCTACTGTCGAAGATTTTATCCTGGAG 3059
|||| | ||||||||||||||| |||||||||||||| |||||||||
Sbjct 2980 TTGGAGATTTTGCTTCCAGATTCCACTGTCGAAGATTTGATCCTGGAG 3027
Score = 2484 bits (1345), Expect = 0.0
Identities = 1610/1738 (93%), Gaps = 18/1738 (1%)
Strand=Plus/Plus
Query 3093 GGGACCGATGTTCTGATACATATTGATGGTTATCGTATTGAAGACTGGATGGGCATCAAC 3152
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3088 GGGACTGATGTTCTGATACATATTGATGGTTATATTATTGAAGACTGGATGGGCATCAAC 3147
Query 3153 CGTAAGGTTGATAGTCGTGGCTGCATTAATCTATCTGGCATTCTTAAGGTCACAGAAGGC 3212
|||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 3148 CGTAAGGTTGATGGCCGTGGCTGCATTGATCTCTCTGGCATTCTTAAGGTCACAGAAGGC 3207
Query 3213 TATGGGAAATCTGTATCACTCTCTGTAATGTCTGGTAATGAAGTTATCTTCTGTAAAGAG 3272
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 3208 TATGGGAAATCTGTATCACTCTCTGTAATGTCTGGTAATGAAGTGATCTTCAGGAAAGAG 3267
Query 3273 TCACAAATTGATGAACGACAGCTAAGACTTGTAACCGAGCTGCCCGACTGCTGTACTGCT 3332
|| |||||||| |||||| ||||||||||||||||| |||||||||||| |||| |||||
Sbjct 3268 TCTCAAATTGAGGAACGAGAGCTAAGACTTGTAACCAAGCTGCCCGACTTCTGTGCTGCT 3327
Query 3333 GGTACAAATCTCATGAACCTCATCTTCCAAGTGACGGAGTTAGATGGTTCTTTGGATACT 3392
||| |||||||| |||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 3328 GGTTCAAATCTCGTGAACCTCATTTTCCAAGTGACAGATTTAGATGGTTCTTTGGATACT 3387
Query 3393 AGCATCCATCATGACGAAAAATCAGGTTGTTTCCATACAATGAGCATTGAATCTGATTCA 3452
|||||||||||||||||||||| || ||||| || |||||| |||||||||||||||||
Sbjct 3388 CGCATCCATCATGACGAAAAATCCGGGTGTTTTCACACAATGTGCATTGAATCTGATTCA 3447
Query 3453 AGCAGCGTTGAAAGTGCAATCAGATATGCCTTTGTCCACGGGTCCTGCAAAGTTTCTTCT 3512
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3448 AGCATCGTTGAGAGTGCAATCAGATATGCCTTTGTCCACGGGTCCTGCAAAGTTCCTTCT 3507
Query 3513 CTCTCCCTACCTGAGAACGAGGGTGTCTTTTCTTGCAGGGTGTTCCATTCTCGATATCCC 3572
|| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 3508 CTTTCCCTACCTGAAAACGAGGGTGTCTTTTCTTACAGGGTGTTCCATTCTCGATACCCC 3567
Query 3573 GAGCTGCAGATGAGCATAAAGATTCAGGTAACATCTGCTCCCACATCTGAAAGAGAGGAG 3632
|||||||| |||||| | | | ||||||| | ||||||||||| ||||||||| |||
Sbjct 3568 GAGCTGCATATGAGCGT--A-A---AGGTAACTTGTGCTCCCACATTTGAAAGAGATGAG 3621
Query 3633 AGTGGATATTCTACACCCCATTCAAAAACGACTCCACCACCTGAATCAGGGATTCCTTCA 3692
| ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| ||||||
Sbjct 3622 ATTGGGTATTCGACACCGTATTC---AACAACTCCACCACCTGAATCAGGGATGCCTTCA 3678
Query 3693 ATCACAAATCCATGGCCGACTCCATGTTCACAGTTTGGAGTATTGGCCATTAGGTCATCA 3752
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3679 ATCACAAATCCATCTTCGACTCCATGTTCACAGTTTGGAGTTTTGGCCATTAGGTCATCA 3738
Query 3753 TCATTGGCTCTCAGTAGCGAAACTAGCCTGATGGATATGGCACAGTACACTGAGGA-TTT 3811
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||| || |||
Sbjct 3739 TCATTGGCTCTCAGTAGCCAAACTGGCCTGATGGATATAGCACAGTACACTGA-GAGTTT 3797
Query 3812 AAAAGAAAAAATCAATATTGACGAAGAACGCCGAGTTGAATTAGA-AGAGCGCCTAAAAT 3870
|||||||| |||||||| ||||||||||| ||||||||||||||| | ||||| ||||||
Sbjct 3798 AAAAGAAACAATCAATAGTGACGAAGAACTCCGAGTTGAATTAGATA-AGCGCATAAAAT 3856
Query 3871 GTTTGCAGGCTCAACGTGAACATGCTGAGCAAGAGTGTAGTAGACTGCAAGCTTCTCTGG 3930
||||||||| ||||| |||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 3857 GTTTGCAGGATCAACATGAACATGCTGAGCAAGAATGTAGTAGGCTGCAAGCCTCTCTGG 3916
Query 3931 AACCTCTTGGTGCACCGTTTCCAGAATGCCTATCCACCAAAGAATCAATGATGAAGCAAA 3990
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3917 AACCTCTTGGTGCATCATTTCCAGAATGCCTATCCACCAAAGAATTAATGATGAAGCAAA 3976
Query 3991 TCGAAGAGAAGCATCATGACACTGCAGCATCAGTGTTCTGTTGTCTGTACAGAAAGGCTC 4050
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3977 TCGAAGATAAGCATCATGACACTGCAGCATCAGTGTTCTGTTGTCTGTACAGAAAGGCTC 4036
Query 4051 CACCTCCACGGTCTCTGTTTCTGTCACAGAAAGGAATGTTTGGCGTTGTAGCGCTTCTAG 4110
| ||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||| |
Sbjct 4037 CGCCTCCACAGTCTCTGTTTCTGTCAAAGAAAGGAATGTTTGGCCTAGTAGCGCTTCTCG 4096
Query 4111 GTTCAGTTGCCTCCACGTCGCTAAGCAGGGTTTTGTCTGAATATTTGGGGAAAGACACAA 4170
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 4097 GTTCAGTTGCCTCCACGTCACTAAGCAGGGTTTTATCTGAATATTTGGGGAAAGACACAA 4156
Query 4171 TGCTTTCTTTGGTGTGCAAATCATCACAGTTTGGACCCAAAAGCGATGAGTATCGCAAGT 4230
|||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 4157 TGCTCTCGTTGGTATGCAAATCATCACAATTTGGACCTAAAAGCGATGAGTATCGCAAGC 4216
Query 4231 TTCAATCTGAAGCAGCTAGCCTCGGACGATCTATCACCAATCGGTTTCTTGTTATTTGTC 4290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4217 TTCAATCTGAAGCAGCTAGCCTCGGACGATCTATCACCAATCGGTTTCTTGTTATTTGTC 4276
Query 4291 TTGATGCAACTAGACCTTGGAGGAACGGACTTGTGAGGAATGATCCTCAGAAGAGATTAG 4350
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4277 TTGATGCAATTAGACCTTGGAGGAACGGACTTGTGAAGAATGATCCTCAGAAGAGATTAG 4336
Query 4351 CCATGGATAACCCTTACCTGCCGAATGGAGATCCTATACCCGGTTTCAAAGGCTACGCTG 4410
| |||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
Sbjct 4337 CTATGGATAACCCTTACCTGCCGAATGGAGATCCTATACCGGGCTTCAAAGGCTATGCCG 4396
Query 4411 TGAACATGATAGATTTAGCTTCAGAGGAGCTGGATATACAATCAAGCTCGGGTTACGGGC 4470
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 4397 TGAACATGATAGATTTATCTTCAGAGGAGCTGAATATACAATCAAGCTCGGGTTACGGGC 4456
Query 4471 TTAGAGAGACACTATTCTATGGAGTTTTCAGAGAGTTGCAGGTATATGAGACCGCAGAGC 4530
|||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 4457 TTAGAGAGACGCTGTTCTATGGAGTTTTTGGAGAGTTGCAGGTATATGAGACCGGGGAGC 4516
Query 4531 ATCTTGAAGCAGCTCTTCCTCACATCAATGGTGGAGACGCTGTGTCTCTAGATGGTGTGA 4590
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 4517 ATCTTGAAGCAGCTCTTCCGCACATCAATGGTGGAGATGCTGTGTCTTTAGATGGTGTGA 4576
Query 4591 TCGCCAGAGAAAACGGTTTCATATACTCTGGTTGCTGTACACCGGAAGTTCATTTTCCAA 4650
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 4577 TCGCCAGAGAAAACGGTTTCATATACTCCGGTTGCTGTACACCGGAAATTCATTTTCCAA 4636
Query 4651 TAACCGTAACGGAGAGGCAAGAGAAGGCATTGGTGCAACTGGAAATAACAAGAGACAAGA 4710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4637 TAACCGTAACGGAGAGGCAAGAGAAGGCATTGGTGCAACTGGAAATAACAAGAGACAGGA 4696
Query 4711 AGAGAAAGACTGAGGAGATGATGACTGAGGAGAATCGTTCGTTGCGCA-GGTTGGTGAAA 4769
|||||||| |||| |||||||||||||||||||| || |||||| | ||| |||||||
Sbjct 4697 AGAGAAAGGTTGAGCAGATGATGACTGAGGAGAATTGTAAGTTGCGTAAGGT-GGTGAAA 4755
Query 4770 AAGTTGAAGAAGGCAAATGAGAAATACCAAAATTTTACTGCTATGG---CAGACTCTT 4824
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 4756 AAGTTGAAGAAGGCAAATGAGAAATACCAACATTTTACTGCTATGGTAGCAGACTCTT 4813
Score = 1061 bits (574), Expect = 0.0
Identities = 677/728 (93%), Gaps = 2/728 (0%)
Strand=Plus/Plus
Query 28 AGATGAGCAGCAGGCGATCAGTGAAGAGATCATTGGTTCTTGATGATGATGACGATGAGG 87
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 38 AGATGAGCAGCAGGCGATCAGTGAAGAGATCATTGATTCTTGATGATGATGAAGATGAAG 97
Query 88 ATATATTCTACAACTTCAAGGTCCTTCTACCTAATGGCACTAGTGTGAAACTCACACTGA 147
|||||||||||| |||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 98 ATATATTCTACACCTTCAAGGTCCTTCTACCAAACGGCACTAGTGTGAAACTCACTGTTA 157
Query 148 AAAACCCAGAACCGGAGATCTCGATGCAGTCTTTTGTCAACTTGGTGAAGAAGGAGTATG 207
| |||||||| || ||||| ||||||||| |||||||||| |||||||||||||||| |
Sbjct 158 ATAACCCAGACCCTGAGATGTCGATGCAGAATTTTGTCAACCTGGTGAAGAAGGAGTACG 217
Query 208 ATAATGCACGAAAAGATTGTCTTTTGATGTCTAAGAGGATGAAGGTTGATTGGAACTCAG 267
||||||| || ||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 218 ATAATGCGCGTAAAGATTGTGTTTTGTTGTCTAAGAGGACGAAGGTTGATTGGAACTCAG 277
Query 268 GCGGAAAGTTTCATCTGGAGTCAAATGGTGGGAAGATGAAAGGCATTGTTCGCTTTGCTG 327
||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 278 GCGGAAAGTTTTATCTTGAGTCAAATGGTGATAAGATGAAAGGCATTGTTCGCTTTGCTG 337
Query 328 CGTTTAAGCCTGACTTGTGCCACATAATACGTCTTGATGACGGTTCTGGTATAGCTTCCA 387
|||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||
Sbjct 338 CGTTTAAGCCCAACTTGTGCCATATTATACGTCTTGATGACGGCTCTGGTATAGCTTTCA 397
Query 388 CCATGTATGAGAACTTGTGGGATTTGACACCGGATACTGACCTACTTAAAGAGCTACCAG 447
||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| |
Sbjct 398 CCATGTATGAGAACTTGTGGGATTTGACACCTGATACTGATCTGCTTAAAGAACTACCTG 457
Query 448 AAAATTATAGCTTTGAGACAGCTCTCGCGGATCTAATAGACAATTCCTTGCAAGCTGTGT 507
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 458 AAAATTATAGCTTTGAGACAGCTCTCGCCGATCTAATAGACAATTCCTTGCAAGCTGTGT 517
Query 508 GGCCTTATCGTGAAGGAGCTCGAAAACTGATTAGTGTGGATATATCTGGTGACCATATTA 567
|||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 518 GGCCTTTTCGTGAAGTAGCTCGAAAACTGATAAGTGTGGATATTTCTGGTGACCGGATTA 577
Query 568 CAGTCTTTGATACCGGGAGAGGAATGGACAGTAGCGAAGG-AAACTCTATTGATAAATGG 626
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 578 CAGTCTTTGATACCGGGAGAGGAATGGACAGTAGCG-AGGAAAATTCTATTGATAAATGG 636
Query 627 GGTAAAATAGGGGCCTCACTACATAGATCTCAAAAAACCGGTGCCATTGGAGGCAATCCA 686
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 637 GGTAAAATAGGGGCCTCAATACATAGATCTCAAAAAACCGGTGCTATTGGAGGCAAGCCA 696
Query 687 CCATACCTTAAGCCATATTTTGGGATGTTTGGATACGGAGGTCCTTATGCTTCTATGTTC 746
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CCATACCTTAAGCCATACTTTGGGATGTTTGGATACGGAGGTCCTTATGCTTCTATGTTC 756
Query 747 TTGGGAAG 754
||||||||
Sbjct 757 TTGGGAAG 764
> Ahg351449 jgi|Araly1|351449|fgenesh1_pg.C_scaffold_6002042
Length=2097
Score = 638 bits (345), Expect = 0.0
Identities = 587/700 (84%), Gaps = 32/700 (5%)
Strand=Plus/Plus
Query 2894 ACCTAATTATGAAGCAACGTTAGAGATACG-TGCAATGGAC-AATCCTTTTTCTGTCTCG 2951
|||| ||||||| ||||| ||||||||| | | ||| |||| || || ||||| ||||
Sbjct 804 ACCTGATTATGAGGCAACCTTAGAGATATGCT-CAAAGGACGAA-CCATTTTCCGTCTTA 861
Query 2952 GTTCCTTGTAAAGTTAATCC-CGGGCCTCTGAAACGA-GTTGCTGTGA-AT-AATCCCA- 3006
||| |||||||||||||||| | |||||||||| | | |||| | ||| || || |||
Sbjct 862 GTTGCTTGTAAAGTTAATCCTC-GGCCTCTGAAGC-ATGTTG-T-TGAGATGTAT-CCAG 916
Query 3007 AGGCTCTGGAAAATTTGCTTCCAGATTCTACTG-TCGAAGATTTTATCCTGGAGTTGTTC 3065
|| || ||||| |||||||||||| ||||||| || || ||| |||||||||| |||||
Sbjct 917 AGTCTTTGGAATATTTGCTTCCAGGCTCTACTGTTC-AAAATTATATCCTGGAGATGTTC 975
Query 3066 GATGGATATAATAACCATGTTGCCGAGGGGACCGATGTTCTGATACATATTGATGGTTAT 3125
||||||||||||||||||||||| || |||||||||||||||||| |||||| || |||
Sbjct 976 GATGGATATAATAACCATGTTGCAGAAGGGACCGATGTTCTGATATGTATTGAGGGCTAT 1035
Query 3126 CGTATTGAAGACTGGATGGGCATCAACCGTAAGGTTGATAGTCGTGGCTGCATTAATCTA 3185
|||| ||||| ||||||| | ||||| ||||| ||||| |||||||| || ||||
Sbjct 1036 TGTATCAAAGACCCGATGGGCTTTAACCGAAAGGTCAATAGTTGTGGCTGCGTTGATCTG 1095
Query 3186 TCTGGCATTCTT-AAGGTCACAGA-AGGCTATGGGAAATCTGTATCACTCTCTGTAATGT 3243
||||| ||||| ||| |||| | || ||||||||||||| ||||||||||||| ||||
Sbjct 1096 TCTGGAATTCTCCAAG-TCACGGCCAG-CTATGGGAAATCTATATCACTCTCTGTTATGT 1153
Query 3244 CTGGTAATGAAGTTATCTTCT--GTAAAGAGTCACAAATTGATGA-ACGACAGCTAA-GA 3299
||||| ||| | ||||| | | |||||||| | ||||| || |||| |||| | |
Sbjct 1154 ATGGTATTGATGAGATCTT-TAAG-AAAGAGTCTCTGATTGA-GAGACGAGAGCTCATG- 1209
Query 3300 CT-TGTAACCGAGCTGCCCGACTGCTGTACTGCTGGTACAAATCTCATGAACCTCATCTT 3358
|| | |||| ||||||| ||||||||| |||||||| ||||||| | |||||||| ||
Sbjct 1210 CTCT-TAACAAAGCTGCCTGACTGCTGTGCTGCTGGTTCAAATCTTACAAACCTCATTTT 1268
Query 3359 CCAAGTGACGGAGTT-AGATGGTTCTTTGGATACTAGCATCCATCATGACGAAAAATCAG 3417
| |||||||||| || ||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 1269 CGAAGTGACGGA-TTCAGATGGTGCTATGGATACTAGTATCCATCATGACGAAAAATCAG 1327
Query 3418 GTTGTTTCCATACAATGAGCATTGAATCTGATTCAAGCAGCGTTGAAAGTGCAATCAGAT 3477
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1328 GATGTTTCCATACCATGAGCATTGAATCTGATTCAAGAAGCGTTGAGAGTGCAATCAGAT 1387
Query 3478 ATGCCTTTGTCCACGGGTCCTGCAAAGTTTCTTCTCTCTCCCTACCTGAGAACGAGGGTG 3537
||||||||||||||| ||||||||||||| || |||| ||||||||||||| ||||||||
Sbjct 1388 ATGCCTTTGTCCACGAGTCCTGCAAAGTTCCTACTCTTTCCCTACCTGAGAGCGAGGGTG 1447
Query 3538 TCTTTTCTTGCAGGGTGTTCCATTCTCGATATCCCGAGCT 3577
||||||||| |||||| ||||||||||||| |||||||||
Sbjct 1448 TCTTTTCTTTCAGGGTTTTCCATTCTCGATTTCCCGAGCT 1487
Score = 394 bits (213), Expect = 3e-108
Identities = 459/573 (80%), Gaps = 35/573 (6%)
Strand=Plus/Plus
Query 3592 AGATTCAGGTAACATCTGCTCCCACATCTGAAAGAGAGGAGAGTGGATATTCTACACCCC 3651
|||||||| |||| |||||| | || ||||||||| |||| ||| | |||||||||
Sbjct 1532 AGATTCAGCTAACGCCTGCTCAAATATTTGAAAGAGATGAGATTGGGTGTTCTACACCTT 1591
Query 3652 ATTCAAAAACGACTCCACCACCTGAATCAGGGATTCCTTCAATCACAAA-TC--C-ATGG 3707
|||||| | || | | ||||| ||||| ||| |||||| |||||| || | |||
Sbjct 1592 ATTCAAGGATGAGTTTAACACCTCAATCAAAGATGGCTTCAACCACAAATTCATCGGTGG 1651
Query 3708 ---C--C-G-----ACTCCATGTTCACAGTTTGGAGTATTGGCCATTAGGTCATCATCAT 3756
| | | |||||||||||||||||| |||| |||||||||||| |||| ||||
Sbjct 1652 CTCCAACTGAACAAACTCCATGTTCACAGTTTAGAGTTTTGGCCATTAGGGCATCGTCAT 1711
Query 3757 TGGCTCTCAGTAGCGAAACTAGCCTGATGGATATGGCACAGTACACTGAGGA-TTTAAAA 3815
||||||||||||| ||||||||||| ||||||||||||||| |||||| || ||||||
Sbjct 1712 CGGCTCTCAGTAGCCAAACTAGCCTGTTGGATATGGCACAGTTCACTGA-GAGCTTAAAA 1770
Query 3816 GAAAAAATCAATA-TTGACGA-AGAACG-CCGAGTTGAATTAGAAGAGCGCCTAAAATGT 3872
|||||| | | || | || | ||| | | ||| ||| |||| |||||||||||||||
Sbjct 1771 GAAAAACTTATTAGAT-AC-AGTGAA-GACATAGTGGAAGTAGATGAGCGCCTAAAATGT 1827
Query 3873 TTGCAGGCTC-AACGTGAA-CATGCTGAGCAAGAG-TGTAGTAGAC-TGCAAGCTTCTCT 3928
||| | || | ||| || || ||| || ||||| || |||| | |||||||||||||
Sbjct 1828 TTGGAAGC-CGAAC-AAAACCAGGCTAAGGAAGAGTTG-AGTA-CCTTGCAAGCTTCTCT 1883
Query 3929 GGAACCTCTTGGTGC-ACCGTTTCCAGAATGCCTATCCACCAAAGAATCAATGATGAAGC 3987
|||| |||| ||||| | | || ||||||||||||||||||||||||||||||||||| |
Sbjct 1884 GGAAACTCTCGGTGCTA-CATTCCCAGAATGCCTATCCACCAAAGAATCAATGATGAAAC 1942
Query 3988 AAATCGAAGAGAAGCATCATGACACTGCAGCATCAGTGTTCTGTTGTCTGTACAGAAAGG 4047
| || ||||||||||||| |||||||||||||| || ||||||||| |||| |||||||
Sbjct 1943 AGATTAAAGAGAAGCATCAGGACACTGCAGCATCGGTTTTCTGTTGTTTGTATAGAAAGG 2002
Query 4048 CTCCACCTCCACGGTCTCTGTTTCTGTCACAGAAAGGAATGTTTGGCGTTGTAGCGCTTC 4107
|||| ||||||| ||||| |||||||||| |||||||| |||||||| |||||| ||||
Sbjct 2003 CTCCGCCTCCACAGTCTCGGTTTCTGTCAAAGAAAGGAGTGTTTGGCCTTGTAGAACTTC 2062
Query 4108 TAGGTTCAGTTGCCTCCACGTCGC-TAAGCAGG 4139
| ||||||||||| ||||| || | || |||||
Sbjct 2063 TTGGTTCAGTTGCTTCCACCTCCCCTA-GCAGG 2094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 182638292827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5