BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24300.1
Length=2431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489289 jgi|Araly1|489289|fgenesh2_kg.6__2423__AT5G24300.1 3526 0.0
> Ahg489289 jgi|Araly1|489289|fgenesh2_kg.6__2423__AT5G24300.1
Length=2364
Score = 3526 bits (1909), Expect = 0.0
Identities = 2137/2247 (95%), Gaps = 15/2247 (1%)
Strand=Plus/Plus
Query 1 AGCATGTCGGCGAAGCTGGAAGGAGATTCTTTACGTAGTAGATAGGCCACAGGTGGTTTC 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AGCATGTCGGCGAAGTTGGAAGGAGATTCTTTACGTAGTAGATAGGCCACCGGTGGTTTC 60
Query 61 AATCTTCCCCAACAACCAGACGAAATCAAACATAAATCTGTAACAGTCGAAGAAACTCTC 120
||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |||
Sbjct 61 AATCTTCCCCAACAACCAGACGAAATCCAACATATATCTGTAACAATCGAAGAAACCCTC 120
Query 121 ACTCTTTAATTGATCAATGGCGTCTCTTCAAATCAGTGGCTCCGTTAAATTCGAGCCGTT 180
|||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 121 ACTCTTCAATCCATCAATGGCGTCTCTTCAGATCAGTGGCTCCGTTAAATTCGAGCCGCT 180
Query 181 CGTTGGATTCAACCGGATCCGCCATTTCCGTCCGATCGCCAGTCTCGGATTTCCTCGTTT 240
|||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||||
Sbjct 181 CGTTGGATTCAACCGGATCCGCTATTTTCGTCCGATCGGCAGTCTCGGATTCCCTCGTTT 240
Query 241 TCGACGGAGATTCAGTATCGGACGGT-CATTGTTGCTTCGTCGTTCTTCTTCCTTCTCCG 299
||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 TCGCCGGAGATTCAGTATCGGAC-GTCCATTGTTGCTTCGTCGTTCTTCTTCCTTCTCCG 299
Query 300 G-TG-ACTCTC-GTGAGTCTGA---TGA--AGAGA-GATTTATCACAGACGCAGAGAGAG 350
| | | || |||||||||| ||| | | | |||||||||| |||||||||||||
Sbjct 300 GCGGTAAAATCGGTGAGTCTGATGGTGATGAAAAAGGATTTATCACTGACGCAGAGAGAG 359
Query 351 ATGGTTCTGGCTCCGTTCTTGGCTTTCAGCTCACTCCTCCTGGTGATCAACAAA-CAGTT 409
||||||||||||||||||| || ||||||||||||||||||||||||||| ||| | ||
Sbjct 360 ATGGTTCTGGCTCCGTTCTCGGATTTCAGCTCACTCCTCCTGGTGATCAAGAAATC-TTT 418
Query 410 AGCACTAGCACAGGAGAAATTACACATCATGAAGAGAAGAAAGAGGCTATTGATCAAATT 469
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 419 AGCACTAGCACAGGAGAAATTACTCATCAAGAAGAGAAGAAAGAGGCTATTGATGAAACA 478
Query 470 GTAATGGCTGACTTTGGCGTACCTGGAAATAGAGCTGTTGAAGAAGGAGCTGCAGAGGTT 529
||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 479 GTAATGGCTGATTTTGGTGTACCTGGAAATAGAGCAGTTGAAGAAGGAGCTGTAGAGGTT 538
Query 530 GGGATTCCGAGTGGAAAAGCTGAAGTTGTCAATAACCTTGTTTTCGTTACATCCGAGGCG 589
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 GGAATTCCGAGTGGGAAAGCTGAAGTTGTTAATAACCTTGTTTTCGTTACATCCGAGGCT 598
Query 590 GCTCCTTACTCGAAAACAGGAGGATTAGGAGATGTTTGTGGTTCTTTGCCGATAGCTTTA 649
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 GCTCCTTACTCGAAAACAGGAGGATTAGGAGATGTTTGTGGTTCTTTGCCAATAGCTTTG 658
Query 650 GCTGGTCGTGGGCATCGTGTTATGGTCATTTCTCCTCGGTACTTAAATGGAACTGCTGCA 709
|| || |||||||| |||||||||||| |||||||||||||| | |||||||| ||||||
Sbjct 659 GCAGGACGTGGGCACCGTGTTATGGTCGTTTCTCCTCGGTACCTCAATGGAACCGCTGCA 718
Query 710 GACAAGAACTATGCCCGGGCTAAGGATTTGGGGATACGTGTAACAGTAAATTGCTTTGGT 769
||||| |||||||| ||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 719 GACAATAACTATGCTCGGGCTAAGGATTTGGGAATACGTATCACAGTAAATTGCTTTGGT 778
Query 770 GGTTCTCAAGAAGTTTCCTTCTATCATGAGTATAGAGATGGTGTTGATTGGGTTTTTGTT 829
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 GGTTCTCAAGAAGTTTCCTTCTATCATGAATATAGAGATGGTGTTGATTGGGTTTTTGTT 838
Query 830 GATCACAAATCCTACCATAGACCTGGTAATCCCTACGGAGATAGTAAAGGAGCCTTTGGT 889
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 GATCACAAATCCTACCATAGACCTGGTAATCCGTACGGAGATAGTAAAGGAGCCTTTGGT 898
Query 890 GACAATCAGTTTCGGTTCACGTTACTTTGCCATGCTGCATGTGAAGCCCCTCTCGTGCTG 949
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 899 GATAATCAGTTTCGGTTCACGTTACTTTGCCATGCCGCATGTGAAGCCCCTCTTGTGCTG 958
Query 950 CCTCTTGGAGGGTTCACTTATGGAGAGAAATCACTCTTCCTTGTCAATGACTGGCATGCC 1009
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 959 CCTCTTGGAGGGTTCACTTACGGAGAGAAATCTCTCTTCCTTGTCAATGACTGGCATGCC 1018
Query 1010 GGCCTTGTTCCCATACTTTTGGCCGCAAAGTATCGCCCATATGGAGTTTATAAGGATGCA 1069
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 AGCCTTGTTCCCATACTTTTGGCCGCAAAGTATCGCCCATACGGAGTTTATAAGGATGCA 1078
Query 1070 AGAAGCATTCTCATTATCCATAACCTCGCTCATCAGGGGGTGGAGCCAGCAGCTACATAC 1129
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1079 AGAAGCATTCTCATTATACATAACCTCGCCCATCAGGGAGTGGAGCCAGCAGCTACATAC 1138
Query 1130 ACCAACTTGGGATTGCCTTCGGAATGGTATGGAGCAGTCGGGTGGGTATTTCCAACGTGG 1189
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1139 ACCAACTTGGGATTGCCTTCGGAGTGGTATGGAGCTGTCGGGTGGGTATTTCCAACGTGG 1198
Query 1190 GCAAGAACTCATGCCCTTGACACCGGTGAAGCGGTTAATGTTCTCAAGGGTGCTATTGTG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCAAGAACTCATGCCCTTGACACCGGTGAAGCGGTTAATGTTCTCAAGGGTGCTATTGTG 1258
Query 1250 ACCTCTGACCGTATCATTACTGTGAGCCAGGGCTATGCATGGGAAATCACTACTGTTGAA 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 ACCTCTGACCGTATCATTACTGTGAGCCAGGGCTATGCATGGGAAATCACTACTGTCGAA 1318
Query 1310 GGTGGTTATGGTCTTCAAGATTTGCTTTCTAGTCGGAAAAGTGTTATAAATGGGATCACA 1369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GGTGGTTATGGTCTTCAAGATTTGCTTTCTAGTCGGAAAAGTGTTATAAATGGGATCACG 1378
Query 1370 AATGGAATTAATGTTGATGAATGGAATCCATCCACGGATGAACACATTCCTTTCCATTAC 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AATGGAATTAATGTTGATGAATGGAATCCATCCACGGATGAACACATTCCTTTCCATTAC 1438
Query 1430 TCTGCTGATGATGTCTCCGAGAAGATCAAATGCAAGATGGCACTACAAAAGGAATTGGGT 1489
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1439 TCTGCTGATGATTTCTCCGAGAAGGTCAAATGCAAGATGGCACTACAAAAGGAATTGGGT 1498
Query 1490 CTCCCCATTAGGCCTGAATGTCCTATGATTGGTTTTATAGGAAGACTTGATTACCAGAAG 1549
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1499 CTCCCCATTAGGCCTGAATGTCCTATGATTGGGTTTATAGGAAGACTTGATTACCAGAAG 1558
Query 1550 GGCATTGATCTGATCCAAACCGCTGGTCCTGATCTCATGGTGGATGACATTCAATTCGTC 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGCATTGATCTGATCCAAACCGCTGGTCCTGATCTCATGGTGGATGACATTCAATTCGTC 1618
Query 1610 ATGCTTGGTTCGGGTGACCCAAAATATGAAAGCTGGATGAGAAGTATGGAGGAAACATAC 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATGCTTGGTTCGGGTGACCCAAAATATGAAAGCTGGATGAGAAGTATGGAGGAAACATAC 1678
Query 1670 AGAGACAAATTCCGTGGTTGGGTTGGGTTCAATGTCCCCATCTCTCATCGAATCACAGCC 1729
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1679 AGAGACAAATTCCGCGGTTGGGTTGGGTTCAATGTTCCCATCTCTCATCGAATCACAGCC 1738
Query 1730 GGCTGTGACATTCTTCTCATGCCGTCGAGATTCGAGCCCTGTGGTTTAAATCAGCTATAC 1789
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1739 GGCTGTGACATTCTTCTCATGCCGTCGAGATTCGAGCCCTGCGGTTTAAATCAGTTATAC 1798
Query 1790 GCAATGAGATACGGAACCATTCCAGTTGTTCATGGCACTGGAGGACTCAGAGATACGGTT 1849
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1799 GCAATGAGATACGGAACCATTCCAGTTGTTCATGGCACAGGAGGGCTCAGAGATACGGTT 1858
Query 1850 GAGAATTTCAACCCTTATGCAGAAGGTGGAGCTGGTACTGGTACAGGGTGGGTCTTCACT 1909
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1859 GAGAATTTCAACCCTTATGCAGAAGGTGGAGCTGGTGCTGGTACAGGGTGGGTCTTCACT 1918
Query 1910 CCCTTGTCGAAAGATAGCATGGTCTCGGCCTTGAGGTTGGCTGCAGCAACGTACAGAGAG 1969
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1919 CCCTTGTCGAAAGATAGCATGGTGTCGGCCTTGAGGTTGGCTGCTGCAACGTACAGAGAG 1978
Query 1970 TATAAACAGTCATGGGAAGGATTGATGAGAAGAGGAATGACCCGAAACTACTCTTGGGAA 2029
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1979 TATAAAGAGTCATGGGAAGGATTGATGAGAAGAGGAATGACACGAAACTATTCTTGGGAA 2038
Query 2030 AACGCTGCCGTTCAGTATGAGCAAGTTTTTCAGTGGGTTTTCATGGACCCTCCCTATGTC 2089
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 2039 AACGCTGCCGTTCAGTATGAGCAAGTTTTCCAATGGGTTTTCATGGACCCTCCCTACGTC 2098
Query 2090 AGCTAGACCAAACATAAACTGAACCAAACCGAGTTGGACCGGATCAGACCAGACCTGACC 2149
|||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2099 AGCTAGACCAAACACAAACCGAATCAAACCGAGTTGGACCGGACCAGACCAGACCTGACC 2158
Query 2150 AATCAGATGGAGAGTGTGGAACCTCCTTTTCCGGCTATCGAAAATCTATGGTTTTCAACG 2209
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2159 AATCAGATGGAGAATGTGGAACCTCCTCTTCCGGTTATCGAAAATCTATGGTTTTCAACG 2218
Query 2210 TTTCCACA--TTAAACCGTGTATCTAT 2234
|||||||| |||||||||||||||||
Sbjct 2219 TTTCCACACATTAAACCGTGTATCTAT 2245
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 2381 TGATAAGACATTATACGAGTAGACTAATA 2409
|||||||||||||||||||||||||||||
Sbjct 2336 TGATAAGACATTATACGAGTAGACTAATA 2364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91607039225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5