BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24314.2 Length=655 Score E Sequences producing significant alignments: (Bits) Value Ahg489293 jgi|Araly1|489293|fgenesh2_kg.6__2427__AT5G24314.1 699 0.0 > Ahg489293 jgi|Araly1|489293|fgenesh2_kg.6__2427__AT5G24314.1 Length=545 Score = 699 bits (378), Expect = 0.0 Identities = 484/531 (91%), Gaps = 24/531 (5%) Strand=Plus/Plus Query 43 GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTATTGATA 102 ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 GTGTAGCCATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTGCTGATA 60 Query 103 CGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGGTTTCTTGTGGGATTCAGAGAG 162 | ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 61 CAAGAAGCGGGAATTTGCGCTGCACATTTCACTCTCAGGTTTCTTGTGGGATTCAGAGAG 120 Query 163 ATGATAATGGACGCCGTGTTTGGCGGAGGAGAACATTGGTAAGTACTAAACTTGATATTT 222 ||||||||||||||||||||||||||| | | | | | || | | Sbjct 121 ATGATAATGGACGCCGTGTTTGGCGGA-G-G---A---G---G------AC-----A--T 156 Query 223 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAAGAAC 282 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 157 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAGGAAC 216 Query 283 AAGTAAGGAAGATAAGAGAAGTTGGGAAGGTAATGACAATGGACATAGAGCAGCTTCTTT 342 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 217 AAGTAAGGAAGATAAGAGAAGTTGGGAAAGTAATGACAATGGACATAGAGCAGCTGCTTT 276 Query 343 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGCGTAGCAGCTGAAGCAACAGAGTACG 402 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 277 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGTGTAGCAGCTGAAGCAACAGAGTACG 336 Query 403 TGGACAAGAACAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTAAGCA 462 |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 337 TGGAAAAAAACAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTGAGCA 396 Query 463 ACCGTGTGAACGATCTCGGCTTTGATCGCCCTGAGGCTTATGTAGAAGCTGATCCTTACA 522 |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 397 ACCGCGTGAACGATCTCGGGTTTGATCGCCCTGAGGCTTATATAGAAGCTGATCCTTACA 456 Query 523 AACCCGGTCCTGGCTATTTGTTGGAGTACTACACTTGATATATTATAACAA 573 | |||||||||||||||||||||||||| ||||| ||| ||||||| |||| Sbjct 457 AGCCCGGTCCTGGCTATTTGTTGGAGTATTACACATGAGATATTATTACAA 507 Score = 65.8 bits (35), Expect = 4e-10 Identities = 38/39 (97%), Gaps = 1/39 (3%) Strand=Plus/Plus Query 605 TTGTATTACCAAAACCAAATCAATGCATTCACAGCTTTG 643 |||||||||| |||||||||||||||||||||||||||| Sbjct 508 TTGTATTACC-AAACCAAATCAATGCATTCACAGCTTTG 545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24017437710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5