BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24460.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg489310 jgi|Araly1|489310|fgenesh2_kg.6__2444__AT5G24460.1 1321 0.0 > Ahg489310 jgi|Araly1|489310|fgenesh2_kg.6__2444__AT5G24460.1 Length=1095 Score = 1321 bits (715), Expect = 0.0 Identities = 869/940 (92%), Gaps = 24/940 (3%) Strand=Plus/Plus Query 87 CGA-TCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 145 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 CGATTCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 111 Query 146 ACCACTCGTTAACCGCCGTAACATCAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 205 ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 112 ACCACTCGTTAACCGCCGT-A-A-CAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 168 Query 206 CGCTTTACCTGATAT-TTTCCTCGCGGCGGTCTCTCTCCTTTTCCTCTGGTCATCTCCTA 264 |||| |||||||| | ||| ||||||||||| ||||| || ||||||||||||||||||| Sbjct 169 CGCTCTACCTGATCTATTT-CTCGCGGCGGTTTCTCTTCTCTTCCTCTGGTCATCTCCTA 227 Query 265 AACCTCTAGTCTCTCTTCCTCCGAACAGATTCTCTTTCCCTCTAAATCCTCGCCGTCGAT 324 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 228 AACCTCTACTCTCTCTTCCTCCAAACAGATTCTCTTTCCCTCTAAATCCTCGCCGTCGA- 286 Query 325 CCATCACCGCCATGTCTCGCCGATctcctcctcctcctcctcctACTCAACGCTTCGCTA 384 ||| ||||||||||||||||| | |||||||||||||| | ||||||||||||| | Sbjct 287 --ATCCCCGCCATGTCTCGCCGA--T-CTCCTCCTCCTCCT--T-CTCAACGCTTCGCGA 338 Query 385 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGATTACCTTCCGATTCATTCGCCGCTT 444 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 339 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGGTTACCTTCCGATTCATTCGCCGCTT 398 Query 445 GGGGAGTCAAACCGGGAACCAAAAACGTTCATAACCTCTGGCTAGAACTCTCCGACGGCG 504 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 399 GGGGAGTCAAACCGGGAACTAAAAACGTTCATAACCTCTGGCTTGAACTCTCCGACGGCG 458 Query 505 AAACTTCTCTCGCCGATTCAACTCCTCCAGTACGCACCGTCAACGTCGTCACCGTTCGAG 564 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 459 AAACTTCTCTCGCCGATTCAACTCCTCCGGTTCGCACCGTCAACGTCGTCACCGTTCGAG 518 Query 565 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 578 Query 625 TTCGTGAAAGATTTCGTCCTTTATCAGAGAAAATGAAGCCTGAAGAATCTCCCGACGAAG 684 || | || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||| Sbjct 579 TTAGAGAGAGATTTCGTCCGTTATCGGAGAAGATGAAGCCTGAAGAATCTCCCGATGAAG 638 Query 685 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTCAATGGCGATGGTGATAACA 744 |||||||||||||||||||||||||||||||||||||||| ||||| |||| | | Sbjct 639 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTTAATGGTGATG---A---CG 692 Query 745 TTGGACAGAGAATTAAGATTCTTCCCGGAACTTATAACAGAAGAGTTGAAGAAAGGAACT 804 ||||||||||||||| ||||||||| |||| ||||| ||||||||| || |||||||||| Sbjct 693 TTGGACAGAGAATTAGGATTCTTCCTGGAAGTTATAGCAGAAGAGTGGAGGAAAGGAACT 752 Query 805 CGCTATCGTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCTGTGAATGCAACGGTGG 864 |||| || ||||||||||||||||||||||||||||||||||| ||| |||| ||||||| Sbjct 753 CGCTGTCTTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCGGTGGATGCGACGGTGG 812 Query 865 AGGGATTACCGGAGCAAGATTTCTGTACGGAGGAAAAAGAGTACGAGGGAGGAGACTCGA 924 ||||| |||||||| |||||||||||||||| || ||||||||||| || |||||||||| Sbjct 813 AGGGACTACCGGAGGAAGATTTCTGTACGGAAGAGAAAGAGTACGACGGTGGAGACTCGA 872 Query 925 CGA---AAGATTCGGTTGAAACACTCGCCGCTGGGAATGCTGTAACTGTGAAACGACATT 981 ||| |||||||||| ||||||| ||||||||| || ||||||||||||||||| |||| Sbjct 873 CGATGGAAGATTCGGTGGAAACACGCGCCGCTGGAAAAGCTGTAACTGTGAAACGGCATT 932 Query 982 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCTTaaaa 1021 |||||||||||||||||||||||||||||||||| ||||| Sbjct 933 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCCTAAAA 972 Score = 163 bits (88), Expect = 2e-39 Identities = 118/131 (90%), Gaps = 7/131 (5%) Strand=Plus/Plus Query 1047 AAATTTTATCAATCTTGCTTTTGATACATGAATAATCAGAGAGCCATGTAGAGATACATA 1106 ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 970 AAATTTTATCAATCTTG---AAGATACATGAATAATC--AGAGCCATGTAGAGATACATA 1024 Query 1107 TACACA--TTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATTTTTGTGTTAGTGG 1164 |||||| |||||||||||||||||||||||||||||||||||||| |||| | || ||| Sbjct 1025 TACACATTTTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATGTTTGAGCTAATGG 1084 Query 1165 ATACTATTCTC 1175 ||||||||||| Sbjct 1085 ATACTATTCTC 1095 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5