BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24490.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489312 jgi|Araly1|489312|fgenesh2_kg.6__2446__AT5G24490.1 1877 0.0
> Ahg489312 jgi|Araly1|489312|fgenesh2_kg.6__2446__AT5G24490.1
Length=1255
Score = 1877 bits (1016), Expect = 0.0
Identities = 1159/1228 (94%), Gaps = 9/1228 (1%)
Strand=Plus/Plus
Query 73 CTCTCTCACTCTCACAAATGGCAACGCTTTTAGGTTTCTCTCAGACTAAGTTTCACCATT 132
|||||||||||| |||||| | |||||||||||||||||||| || |||||||||||||
Sbjct 35 CTCTCTCACTCT--CAAATGTCGACGCTTTTAGGTTTCTCTCAAACGAAGTTTCACCATT 92
Query 133 GCGGCGTCTGGATTTCTACGCCGCCGTGCTCATCTTCTTCCACGGTAGTCTCAATGGTGG 192
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 93 GCGGCGTCTCGATTTCTACGCCGCCGTGCTCATCTTCTTCCACGGTGGTCTCAATGGTTG 152
Query 193 GCTTGAATCGGACTGATTCGAAAAAGCTCCGTTCAGATTTCCTCGGCCAGATTGGTTACG 252
||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 153 GCTCGACCCGGACTGATTCGAAAAAGCTCCGGTCAGATTTCCTCGGCCATATTGGTTACG 212
Query 253 AAGATCGGAGACAAGTAAGACACAGTTACTGTAGAAGCTCATTAGCTGTGAAAATGTCGT 312
| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 213 ATGATCGGAGACAAGTAAGACCCAGTTCCTGTAAAAGCTCATTAGCTGTGAAAATGTCGT 272
Query 313 GGGACGGTCCTCTTGCTTCCGTCAAGTTGATCATCCAAGGAAAAAACCTCGAGTTATCAG 372
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GGGACGGTCCTCTCGCTTCCGTCAAGTTGATCATCCAAGGAAAAAACCTCGAGTTATCAG 332
Query 373 AGCCAATTAAGCAGCATGTTGAAGAGAAAGTAGGCAAATCTGTTCAGAAACACAGTCATC 432
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 333 AGCCAATCAAGCAGCATGTTGAAGATAAAGTAGGGAAATCTGTTCAGAAACACAGTCATC 392
Query 433 TTGTGAGAGAAGTTGATGTAAGACTCTCTGTTCGTGGTGGAGAGTTTGGTAAAGGCCCTA 492
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 393 TTGTGAGAGAAGTTGATGTAAGACTCTCTGTTCGAGGCGGAGAGTTTGGTAAAGGCCCTA 452
Query 493 GGATTCGAAGATGTGAGGTGACATTGTTTACAAAGAAGCATGGTGTTGTGCGTGCTGAGG 552
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GGATTCGTAGATGCGAGGTGACATTGTTTACAAAGAAGCATGGTGTTGTGCGTGCTGAGG 512
Query 553 AAGATGCTGAGACAGTATACGCTTGTATCGACTTGGTATCAACGATAATACAGAGGAAGC 612
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AAGATGCTGAGACGGTATATGCTTGTATCGACTTGGTATCAACGATAATACAGAGGAAGC 572
Query 613 TGAGGAAGATCAAGGAGAAGGACTCAGACCATGGAAGGCACATGAAAGGTTTCAACAGAT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TGAGGAAGATCAAGGAGAAGGACTCAGACCATGGAAGGCACATGAAAGGTTTCAACAGAT 632
Query 673 TGAAGGTAAGGGAACCAGTGATTGAGCCGGTTGTGGAGGATGTTGAGGACAGTACTGACT 732
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 633 TGAAGGTAAGAGAACCAGTGATTGAGCCGGTTGTGGAGGATGTTGAGGATAGTACTGACT 692
Query 733 CGAGCGTAGGAGAAGAAGAAGAAGAGGATGATTTGATCAAGGAGATTGTCCGTACCAAGA 792
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CGAGCTTAGGAGAAGAAGAAGAAGAGGATGATTTGATCAAGGAGATTGTCCGTACCAAGA 752
Query 793 CTTTCGAGATGCCACCATTGACTGTCGCTGAGGCAGTCGAGCAGCTGGAACTAGTCAGTC 852
|||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 753 CTTTTGAGATGCCCCCATTGACTGTCTCTGAGGCAGTTGAGCAGCTGGAACTAGTCAGTC 812
Query 853 ACGACTTCTATGGCTTCCAAAATGAAGAAACTGGTGAGATAAACATAGTGTACAAGAGAA 912
| |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 813 ATGACTTCTATGGCTTTCGAAATGAAGAAACTGGTGAGATTAACATAGTGTACAAGAGAA 872
Query 913 AAGAAGGAGGTTACGGTCTGATAATCCCAAAGAAAGACGGGAAGGCCGAGAAGGTTGAGC 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AAGAAGGAGGTTACGGTCTGATAATCCCAAAGAAAGACGGGAAGGCCGAGAAGGTTGAGC 932
Query 973 CGCTTCCAACCGAGCAATTGAATGAACACTCTTTCGCCGAGTAGACTGCCTCTGCTCACA 1032
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 933 CGCTTCCAACCGAGCAACTGAATGAACACTCTTTCGCCGAGTAGACTGTCTCTGCTCACA 992
Query 1033 CCAAAACCGATAAGCTCATCTCTCCTTACAGTTTACCTGTGTAGGAGTTAGGGTTCTTGA 1092
| |||| ||| || |||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 993 TCTAAACAGATCAGTTCATCTCTCCTTTCAGTTG-CTTGTGTAGGAGTTAGGGTTCTTGA 1051
Query 1093 -ATAAACAATGCAACAAAGATTGTAGAAGTCAGTGTACATaaaaaaaTGGCCAACCACTC 1151
| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1052 GA-AAATAATGAAACAAAGATTGTAGAAGTCAGTGTACATAAAAAAA-GGCCAACCACTC 1109
Query 1152 TTTGT-TACTTTTGTGGTGAAAAGGAAGATCTTAATTCTCTTTCCATCAGATGATAGCAA 1210
||||| |||||||| | |||| ||||||||||||| ||||| |||||||||||||||
Sbjct 1110 TTTGTATACTTTTGCG-TGAATCTGAAGATCTTAATTATCTTTAAATCAGATGATAGCAA 1168
Query 1211 TACATTTTTTCATAAACAAGAATGTTACATAATAATCATACAACAGTCATCATCATATAC 1270
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1169 TACATTTTT-CATAAACAAGAATGTGACATAATAATCATACAACAGTTATCATCATATAC 1227
Query 1271 ATAAATGCCAAACTTGGTTTGGTTTAGT 1298
|||||||| |||||| ||||||||||||
Sbjct 1228 ATAAATGCGAAACTTAGTTTGGTTTAGT 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5