BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24610.1 Length=801 Score E Sequences producing significant alignments: (Bits) Value Ahg942018 jgi|Araly1|942018|scaffold_602562.1 695 0.0 > Ahg942018 jgi|Araly1|942018|scaffold_602562.1 Length=490 Score = 695 bits (376), Expect = 0.0 Identities = 457/493 (93%), Gaps = 18/493 (4%) Strand=Plus/Plus Query 107 TCAGA-TCACAGGAATAAGATGGAGGTATTTGGAAAATCTCCCATGGTTGTTACATCTGC 165 ||||| ||| | ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 3 TCAGATTCA-AAGAATAAGATGGAGGTATTTGGAAAATCTCCCAT-G--GTTACATCTGC 58 Query 166 CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGG--------A----CA 213 ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 59 CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGGACCCAACCAGTCTCA 118 Query 214 CAAATGTGATTGGAAATGTGAGAATGAAAATGTTTGTGGGAATATGTATCGCTGCAAACT 273 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 119 CAAATGTGATTGGAAATGTGAGAATGAAATTGTTTGTGGGAATATGTATCGCTGCAAACT 178 Query 274 AACTGGACTAACTCATGTCTGCGACAAGAACTGTAACCAGCGGATTCTCTATGATAACCA 333 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 179 AACTGGGCTGACTCATGTCTGCGACAAGAACTGTAATCAGCGGATTCTCTATGATAACCA 238 Query 334 TAGCTCTTTGTGCCGAGCCAGTGGGAGGATTTTCCCTCTCTCGTCCGTCGAGGAGCAGGC 393 ||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||| Sbjct 239 TAGCTCTTTGTGCCGAGCCAGCGGGAGGATTTTCCCTCTCTCATCGGTTGAGGAGCAGGC 298 Query 394 GGTTAAAGGTGTTCGGAGGAAGCTTGACGCCGCTGAGAGTCATCCTTCTGAGAGCTGTTC 453 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 299 GGTTAAAGGGGTTCGGAGGAAGCTTGACGCTGCTGAGAGTCATCCTTCTGAGAGTTGTTC 358 Query 454 GTTTAAGCGTCGTCGTCGTGATGCTCAGTTCCATGCTTCTCCTTTCGAGAGGTCTTTTAC 513 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 359 GTTTAAGCGTCGTCGTCGTGATGCTCAGTTTCACGCTTCTCCTTTCGAGAGGTCTTTTAC 418 Query 514 TGCTGTGAGCCCTATCTGCAGCCCGGCTGGAGACGGAATGGAGTTGGTTTAGATTCCATG 573 |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||| Sbjct 419 TGCTGTGAGCCCCATCTGCAGCCCAGCTGGAGACGGAATGGAGTTGATTTAGAT-CCATG 477 Query 574 TTGATCTCCGCAA 586 ||||||||| ||| Sbjct 478 TTGATCTCCTCAA 490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29583383592 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5