BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24630.6 Length=1875 Score E Sequences producing significant alignments: (Bits) Value Ahg894371 jgi|Araly1|894371|Al_scaffold_0006_2367 1046 0.0 > Ahg894371 jgi|Araly1|894371|Al_scaffold_0006_2367 Length=1479 Score = 1046 bits (566), Expect = 0.0 Identities = 803/907 (89%), Gaps = 57/907 (6%) Strand=Plus/Plus Query 466 ATGATAGTCCTTATAGGGAATCTGAAGTCATTTCGTCTCTTCCTTTGCCTGATGATGACG 525 |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| Sbjct 176 ATGATAGTCCTTATAGAGAATCTGAAGCCGTTTCGTCTCTTCCTTTGCCTGATGATGACG 235 Query 526 GTGACG-----AC-A---TTGTG---G-TTCT-T-GAG--AC-AGAATCTGTGGAG-T-- 564 |||||| || | ||| | | ||| | ||| | ||||||||| ||| | Sbjct 236 GTGACGACACCACGATTCTTGAGAAAGAATCTGTGGAGTCTCAAGAATCTGTCGAGTTAC 295 Query 565 TACTGACTAGGAAGAATTCCGAAACGAAGGTTGTGACGAAGCAAGTGAGTATCGAGCAGG 624 ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 296 TACTGTCTAGGAAGAATTCCGAAACGAATCTTGTGATGAAGCAAGTGAGTATCGAGCAGG 355 Query 625 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTGAAGATTCGTGTGCAGGGA 684 |||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct 356 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTG-A-A-------G--GGG- 403 Query 685 AGGAGAATGGAAACAACGTTGACT-GTGAAAAACTCTCTAGCAAGCATAAGGATGCTCAA 743 || ||||||| ||||||||||| | | ||||||||||||| ||||||||||||||||||| Sbjct 404 AGCAGAATGGGAACAACGTTGA-TGGGGAAAAACTCTCTACCAAGCATAAGGATGCTCAA 462 Query 744 GGAGGAGCTGATTCTGTATGGCTTGTCTCATCTGATTCTGAGCCAT-C-C---T-CTCCT 797 ||||||| ||||||||||||||| ||||||||||||||||| |||| | | | |||| Sbjct 463 GGAGGAGATGATTCTGTATGGCTGGTCTCATCTGATTCTGAACCATCCTCTAGTGCTCCG 522 Query 798 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGCGGATTTTGTTCTTGAAGCTACA 857 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 523 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGAGGATTTTGTTCTTGATGCTACA 582 Query 858 GAGGAAGAACCAGCAGTTAAGACAGTTCGaaaggaaaaatctccaaaaacaaagtcaaaa 917 ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 583 GAGGAAGAACCTGCAGTTAAGAAAGTTCGAAAGGAAAAATCTCCAAAAACAAAGTCAAAG 642 Query 918 aGCAGTCGCAAGACACCCAAGGAAGGAAATAGTGCACAGGAAATTTTAAAAACTGAAGAT 977 ||| |||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||| Sbjct 643 AGCGGTCGCAAGACACCCAAGGAAGGAAATGGTGCACAGAAAATTTTTAAAAGTGAAGAT 702 Query 978 AAAGATAC-AGATACCACTATAGCCGAGCAAGTAACACCGGAAAAATCTCCAAAAACAAA 1036 |||| || | ||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 703 AAAGTTATTA-ATACCACTATAGCCGAGGAAGTAACAACGGAAAAATCTCCAGAAACAAA 761 Query 1037 GTCAAAAAGCAGTCGCAAGACACCCAAGGAAGAAAATTGTGCACAAGAAA-TTTTAAAAA 1095 ||| ||||||||||||||||||||||| ||||||||| ||||||| |||| |||| |||| Sbjct 762 GTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAGTGCACA-GAAAATTTTTAAAA 820 Query 1096 CTGAAGATAAAGATAAAGATACAGATACAGATACCATTATAGCCGAGGAAGTAACAACGG 1155 |||||||||||||| |||||| || | | ||||||||||||| |||||||| Sbjct 821 GTGAAGATAAAGATACAGATAC-----CA----C--T-ATAGCCGAGGAAGGAACAACGG 868 Query 1156 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 1215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 928 Query 1216 AGGTTAATCGTACAAAGGTACTCGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 1275 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 929 AGGTGAATCGTACAAAGGTACTTGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 988 Query 1276 ACATGGGGGCTGTTGGACGCGTGGTTGTTTCAGACACAACCGGGGACATGTACTTGGACT 1335 ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| Sbjct 989 ACATGGGGGCTGTTGGACGAGTAATTGTTTCAGACACAACCGGAGACATGTACTTGGACT 1048 Query 1336 TGAAAGG 1342 ||||||| Sbjct 1049 TGAAAGG 1055 Score = 662 bits (358), Expect = 0.0 Identities = 385/398 (97%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 1340 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTTGTTAACGTAGG 1399 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1083 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTAGTTAACGTAGG 1142 Query 1400 TCAGACAGAGGCTAAGATTGAAGCTATTATGAATGACTTCATACAGCTGATACCACAATC 1459 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1143 TCAGACAGAGGCAAAGATTGAAGCTATTATGAATGACTTCATACAGCTGACACCACAATC 1202 Query 1460 TAATGTCTACGAGGCAGAAACAATGGTGGAAGGCACTCTGGAAGGATTTACGTTCGAATC 1519 |||||| |||||||||||||||||||| |||||||||||||| |||||| | |||||||| Sbjct 1203 TAATGTGTACGAGGCAGAAACAATGGTAGAAGGCACTCTGGAGGGATTTTCATTCGAATC 1262 Query 1520 AGATGATGAAAGTAACAAAAACGCCAAGACTGCTGT-AAAGCCAGCTGATCAAAGTGTAG 1578 ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| || Sbjct 1263 AGATGATGAAACTAACAAAAACGCCAAGACTGCT-TCAAAGCCAGCTGATCAAAGTGGAG 1321 Query 1579 GCACAGAGGAAGaaaccaacacaaaagccaaacccaaagccaaagcaaaaggcgaaactg 1638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 GCACAGAGGAAGAAACCAACACAAAAGCCAAACCCAAAGCCAAAGCAAAAGGCGAAACTG 1381 Query 1639 ttataggaaaaaagAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1382 TTATAGGAAAAAAGAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1441 Query 1699 GAAATTCTGCCCCTAAGAAGCCAAAAGCCAAGAAATGA 1736 |||||||||||||||||||||||||| ||||||||||| Sbjct 1442 GAAATTCTGCCCCTAAGAAGCCAAAATCCAAGAAATGA 1479 Score = 183 bits (99), Expect = 3e-45 Identities = 119/129 (92%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 890 ggaaaaatctccaaaaacaaagtcaaaaaGCAGTCGCAAGACACCCAAGGAAGGAAATAG 949 ||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||| Sbjct 741 GGAAAAATCTCCAGAAACAAAGTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAG 800 Query 950 TGCACAGGAAATTTTAAAAACTGAAGATAAAGATACAGATACCACTATAGCCGAGCAAGT 1009 ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||| Sbjct 801 TGCACAGAAAATTTTTAAAAGTGAAGATAAAGATACAGATACCACTATAGCCGAGGAAGG 860 Query 1010 AACACCGGA 1018 |||| |||| Sbjct 861 AACAACGGA 869 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70428863005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5