BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24670.2 Length=1800 Score E Sequences producing significant alignments: (Bits) Value Ahg476263 jgi|Araly1|476263|fgenesh2_kg.2__1393__AT5G24670.1 1917 0.0 Ahg918993 jgi|Araly1|918993|scaffold_100274.1 1851 0.0 Ahg926438 jgi|Araly1|926438|scaffold_201999.1 255 6e-67 Ahg926491 jgi|Araly1|926491|scaffold_202052.1 219 8e-56 > Ahg476263 jgi|Araly1|476263|fgenesh2_kg.2__1393__AT5G24670.1 Length=1508 Score = 1917 bits (1038), Expect = 0.0 Identities = 1226/1312 (93%), Gaps = 32/1312 (2%) Strand=Plus/Plus Query 492 GTCTCTGTGTCTTGTTGCTTGGAGC-AAGCTCTCCAGCGCTCAAG--AAT-AGATAA-A- 545 ||||||||||||| |||||| |||| ||||| | |||| | || ||| || ||| | Sbjct 104 GTCTCTGTGTCTT-TTGCTT-GAGCAAAGCT-T-TAGCG-T-GAGTTAATAAG-TAATAG 156 Query 546 ATAAA-ATTATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTG 604 | ||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 157 AGAAAGATTATGGATTCAGATGCATGGGAAATCATCCATATACCTGAAAAGCCTGCATTG 216 Query 605 TCACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCC 664 ||||||||||||||||||||||| ||||||||||| || ||||||||||||| ||||||| Sbjct 217 TCACCTGACCATCAGCCCACTGTAAAGGTATATGCGAGTCTAATCAAACCCAAATTTGCC 276 Query 665 AATACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAA 724 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 277 AATACGATAGTCAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGCCATGTTAAA 336 Query 725 AGGGTGAAGAAGAAGATTCTGCCAGATTGCGCTTATTGGACAGGTGAAACTCAGTTGACT 784 |||||||||||||||||||| ||||| | | | | |||||||||||||||||| Sbjct 337 AGGGTGAAGAAGAAGATTCTTCCAGA-T---C------G-C-GGTGAAACTCAGTTGACT 384 Query 785 GTCATCTTATGTCTAGCACCTGAGCACAACGATCAG-TTGAGTGACATGCCACCTGATGT 843 ||||||||||||||||||||||||||| |||||| | |||| | |||||||||||||| Sbjct 385 GTCATCTTATGTCTAGCACCTGAGCACCACGATC-GTTTGAACAATATGCCACCTGATGT 443 Query 844 GCAGAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 903 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 GCAGAAACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 503 Query 904 TGCGGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCC 963 ||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 504 TGCGGTATCAAAAGAAGAGTGGGAAGAACAGAGTAAGATATGGCCAACTTCTTTTCATCC 563 Query 964 ACCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTG 1023 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 564 CCCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGATACACAATCGATCTG 623 Query 1024 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGC 1083 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 624 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATAAACCACTTGTAAATGC 683 Query 1084 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 743 Query 1144 TGCATCATCTGCTCCTCGTGAC-ATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAG 1202 |||||||||||||||||| ||| || |||||||||| ||||||||||||| ||||||||| Sbjct 744 TGCATCATCTGCTCCTCGCGACAAT-ACTAGCGCAGGGACCAGGCCCTTCAAGGAAACAG 802 Query 1203 GGGAAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTT 1262 |||||||||| ||||||| || ||||||||||||||||||||||||||||||| || ||| Sbjct 803 GGGAAATATGCTTAAATGGCATACTTGAAAAACAGAATGGTTCATTGTCTGCTGTTGCTT 862 Query 1263 GTCTGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGC 1322 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 863 GTCTAAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAATGGC 922 Query 1323 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATC 1382 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| Sbjct 923 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCTTCTTCGGCCAGAGATAGACATC 982 Query 1383 TGTTTCCCAATCCATCCAAGA-TTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGAT 1441 ||||||||||| ||||| ||| |||| | || ||||||||||| |||||||||||||||| Sbjct 983 TGTTTCCCAATTCATCCGAGAGTTTTCG-TCTGGATCATGTTCAGCCCTCAAATACAGAT 1041 Query 1442 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGCAGA 1501 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1042 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAATTGACAGTGGA 1101 Query 1502 GAAGAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATT 1561 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1102 GAAGAGACTCTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGATATT 1161 Query 1562 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1221 Query 1622 CGGATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1681 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1222 CGAATTTTCTATGCTTTTCCAAACCCCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1281 Query 1682 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1282 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1341 Query 1742 GCACTTAGACAAATGACCACGGTCTAATGCATTGTTGTAGTCGATTGATAAT 1793 ||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1342 GCACTTAGACAAATGACCATGGTCTAATGCATTGTTGTAGTCGATCGATAAT 1393 > Ahg918993 jgi|Araly1|918993|scaffold_100274.1 Length=1244 Score = 1851 bits (1002), Expect = 0.0 Identities = 1165/1242 (94%), Gaps = 17/1242 (1%) Strand=Plus/Plus Query 548 AAA-ATTATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTGTC 606 ||| |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 15 AAAGATTATGGATTTAGATGCATGGGAAATCATCCATATACCTGAAAAGCCTGCATTGTC 74 Query 607 ACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCCAA 666 ||||||||||||||||||||| ||||||||||| || ||||| ||||||| ||||||||| Sbjct 75 ACCTGACCATCAGCCCACTGTAAAGGTATATGCGAGTCTAATTAAACCCAAATTTGCCAA 134 Query 667 TACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAAAG 726 || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 135 TATGATAGTCAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGCCATGTTAAAAG 194 Query 727 GGTGAAGAAGAAGATTCTGCCAGATTGCGCTTATTGGACAGGTGAAACTCAGTTGACTGT 786 |||||||||||||||||| ||||| || | | |||||||||||||||||||| Sbjct 195 GGTGAAGAAGAAGATTCTTCCAGA-------TA---G-C-GGTGAAACTCAGTTGACTGT 242 Query 787 CATCTTATGTCTAGCACCTGAGCACAACGATCAGTTGAGTGACATGCCACCTGATGTGCA 846 ||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||| Sbjct 243 CATCTTATGTCTAGCACCTGAGCACCACGATCAATTGAACAATATGCCACCTGATGTGCA 302 Query 847 GAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGCTGC 906 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GAAACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGCTGC 362 Query 907 GGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCCACC 966 |||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| || || Sbjct 363 GGTATCAAAAGAAGAGTGGGAAGAACAGAGTAAGATATGGCCAACTTCTTTTCACCCCCC 422 Query 967 AACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTGCAA 1026 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 423 AACTTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGATACACAATCGATCTGCAA 482 Query 1027 GTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGCTGC 1086 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 483 GTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATAAACCACTTGTAAATGCTGC 542 Query 1087 AGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATATGC 1146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 AGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATATGC 602 Query 1147 ATCATCTGCTCCTCGTGAC-ATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAGGGG 1205 ||||||||||||||| ||| || |||||||||| ||||||||||||| |||||||||||| Sbjct 603 ATCATCTGCTCCTCGCGACAAT-ACTAGCGCAGGGACCAGGCCCTTCAAGGAAACAGGGG 661 Query 1206 AAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTTGTC 1265 ||||||| ||||||| || |||||||||||||||| |||| ||||||||| || |||||| Sbjct 662 AAATATGCTTAAATGGCATACTTGAAAAACAGAATTGTTCGTTGTCTGCTGTTGCTTGTC 721 Query 1266 TGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGCATC 1325 | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| Sbjct 722 TAAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAATTTGTAGCCAATGGAATC 781 Query 1326 CTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATCTGT 1385 |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 782 CTCTTAGGCATGCTTCCATGGTTGCCATTGAATCTTCTTCGGCCAGAGATAGACATCTGT 841 Query 1386 TTCCCAATCCATCCAAGATTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGATTCTC 1445 |||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 842 TTCCCAATTCATCCGAGATTTTTGGTCAGGATCATGTTCAGCCCTCAAATACAGATTCTC 901 Query 1446 CGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGCAG-AGAA 1504 ||||||||||||||||||||||||||||||||||||||||||||| |||| || | |||| Sbjct 902 CGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAGTGACGGC-GAAGAA 960 Query 1505 GAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATTTTC 1564 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GAGACTCTTAGACATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATTTTC 1020 Query 1565 CTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAACGG 1624 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CTCCTGTTGGAGCCCTGTGCAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAACGG 1080 Query 1625 ATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTTCAA 1684 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1081 ATTTTCTATGCTTTTCCAAACCCCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTTCAA 1140 Query 1685 GGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGACGCA 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGACGCA 1200 Query 1745 CTTAGACAAATGACCACGGTCTAATGCATTGTTGTAGTCGAT 1786 ||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1201 CTTAGGCAAATGACCATGGTCTAATGCATTGTTGTAGTCGAT 1242 > Ahg926438 jgi|Araly1|926438|scaffold_201999.1 Length=370 Score = 255 bits (138), Expect = 6e-67 Identities = 156/165 (95%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 973 CAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTGCAAGTTCAT 1032 ||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||||||| Sbjct 92 CAATATAGATGGCATTGGTGGGTTTAGCGAGGAGGACACACAATCGATCTCCAAGTTCAT 151 Query 1033 GAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGCTGCAGTGAT 1092 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| Sbjct 152 GAGAGTTGTTATTGATATGGCAGTATCTGGTCCTAAACCACTTGTAAATGCTGCAGTGAT 211 Query 1093 AGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCA 1137 |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 212 AGTTGATCCTTCAGTTAGGCGAATAATAGCTACTGAAACTGATCA 256 > Ahg926491 jgi|Araly1|926491|scaffold_202052.1 Length=286 Score = 219 bits (118), Expect = 8e-56 Identities = 128/133 (96%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1496 AGCAGAGAAGAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTAT 1555 ||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 108 AGCGGAGAAGAAACTCTTAGAGATCCTTCAATAGAAAGGCCGTACCTCTGCACTGGTTAT 167 Query 1556 GACATTTTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGA 1615 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 GACATTTTCCTCATGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGA 227 Query 1616 ATAAAACGGATTT 1628 ||||||||||||| Sbjct 228 ATAAAACGGATTT 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67572094630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5