BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24690.1 Length=2130 Score E Sequences producing significant alignments: (Bits) Value Ahg942027 jgi|Araly1|942027|scaffold_602571.1 2662 0.0 Ahg489330 jgi|Araly1|489330|fgenesh2_kg.6__2464__AT5G24680.1 73.1 8e-12 > Ahg942027 jgi|Araly1|942027|scaffold_602571.1 Length=1603 Score = 2662 bits (1441), Expect = 0.0 Identities = 1551/1605 (97%), Gaps = 3/1605 (0%) Strand=Plus/Plus Query 220 TTTTAATCCTGGTAAAGCCATGTCACATATGGTGTTTCAGAGCGTTGTCGCTCCCAAACC 279 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2 TTTTAATCCTGGTGAAGCCATGTCGCATATGGTGTTTCAGAGCGTTGTCGCTCCCAAACC 61 Query 280 CTTATCTCCTCTCAAACCCTGTTTACCTATCCCTCGTCCACTCGTTACTCTGCCTTGTAA 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 CTTATCTCCTCTCAAACCCTGTTTACCTATCCCTCGTCCACTCGTTACTCTGCCTTGTAA 121 Query 340 GCTCCGTCGTGGCTTCGTTAGAGCTTCTTCGTCCTCGTTTCTTGTCGATGATTCAGTTTC 399 ||||||||| ||||||||||||| |||||||| | |||||||||||||||||||| || Sbjct 122 GCTCCGTCGCGGCTTCGTTAGAG---CTTCGTCCGCTTTTCTTGTCGATGATTCAGTATC 178 Query 400 AGGACTCGAGCGTTGCTTACAGTTACCTTCTGGAGTTGAGTTAGGCACATCTTCCTCTGG 459 ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 179 AGGTCTCGAGCGTTGCTTACAGTTACCTTCGGGAGTTGAGTTAGGCCCATCTTCCTCTGG 238 Query 460 CTCTTTCTCTGCAAGTACTCAGATGTGTCCTGTGATGAAAGGCAAATTTGGTTCGGTAGG 519 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 239 CTCTTTCTCTGCAAGTACTCAGATGTGTCCTGTGATGAAAGGGAAATTTGGTTCGGTAGG 298 Query 520 AGCTGTTACTTTGGAAAAAGGGAAGCTTGATATGACCCAGAAGATTTCTGAGACTAGCCC 579 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 299 AGCTGTAACTTTGGAAAAAGGGAAGCTTGATATGACCCAGAAGATTTCTGAGACCAGCCC 358 Query 580 TGAGATTGCAACTGGAGGAGGGGGTGGAAACATTGGAAAGAGTATCAATAATGGTGGTGG 639 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 359 TGAGATTGCAACTGGAGGAGGTGGTGGAAACATTGGAAAGAGTATCAATAACGGTGGTGG 418 Query 640 Cgatggaggtgacgataatggtgatgatgatgattactttgatgaattcgatgatggtga 699 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 419 CGATGGAGGTGACGATAATGGTGATGATGATGATTATTTTGATGAATTTGATGATGGCGA 478 Query 700 tgagggagatgatgatgGACTTTTTAGGCGTAGGATGTTTCTCGCAGAGATTTTTGATAG 759 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 479 TGAGGGAGATGATGATGGACTTTTTAGGCGTAGGATGTTCCTCGCAGAGATTTTTGATAG 538 Query 760 GAAATTCGTTGATGCTGTGTTGAATGAATGGCAAAAAACAATGATGGATTTACCTGCCGG 819 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 539 GAAATTTGTTGATGCTGTGTTGAACGAATGGCAAAAAACAATGATGGATTTACCTGCTGG 598 Query 820 TCTCCGTCAAGCATATGAAATGGGTTTGGTCAGCTCAGCTCAAATGGTGAAATTCCTTGC 879 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 599 TCTCCGTCAAGCATATGAAATGGGTTTGGTCAGCTCAGCACAAATGGTGAAATTCCTTGC 658 Query 880 CATAAATGCCCGTCCTACAACGACTAGAATGATCTCCCGTGCCCTTCCTCAGGGATTATC 939 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || Sbjct 659 TATAAATGCCCGTCCTACAACAACTAGAATGATCTCCCGTGCTCTTCCTCAGGGATTGTC 718 Query 940 GAGGGCCTTTGTTGGCAGGATGTTGGCGGATCCTGCATTTCTCTATAAACTTCTTTTGGA 999 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 719 GAGGGCCTTTGTTGGCAGGATGTTGGCGGATCCTGCATTTCTGTATAAACTTCTTTTGGA 778 Query 1000 GCAAGCTGCCACGGTTGGATGCTCAGTTTGGTGGGAGGTGAAGAATCGTAAGAATAGACT 1059 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 779 GCAAGCTGCCACGGTTGGATGCTCGGTTTGGTGGGAGGTGAAGAATCGTAAGAATAGACT 838 Query 1060 AAAAGAGGAATGGGATCTTGCACTTATAAATGTTCTTACTGTATCAGCATGCAATGCAGC 1119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AAAAGAGGAATGGGATCTTGCACTTATAAATGTTCTTACTGTATCAGCATGCAATGCAGC 898 Query 1120 TGCTGTTTGGTTACTAGCTCCATGTCGTTCCTATGGAAACACATTCCGGTTTGACCTGCA 1179 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TGCTGTTTGGTTGCTAGCTCCATGTCGTTCCTATGGAAACACATTCCGGTTTGACCTGCA 958 Query 1180 AAATACATTACAAAAGCTACCAAATAATTTATTTGAAATGAGCTATCCTCTTAGAGAGTT 1239 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AAATACACTACAAAAGTTACCAAATAATTTATTTGAAATGAGCTATCCTCTTAGAGAGTT 1018 Query 1240 CGACTTGCAAAAGAGATTTCATTCTCTTTTCTACAAGGCTGCAGAGTTGTCCATTCTTGG 1299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CGACTTGCAAAAGAGATTTCATTCTCTTTTCTACAAGGCTGCAGAGTTGTCCATTCTTGG 1078 Query 1300 ACTCGCAGCAGGAACACTCCAGGGTTCGTTGTCAAACGTTCTAGCAGGAAAGAAGAAGAA 1359 ||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1079 ACTCGCAGCAGGAACTCTCCAGGGTTCGTTGTCAAACTTTCTGGCAGGAAAGAAGAAGAA 1138 Query 1360 CAGAGTATCTGTGACGGTCCCATCTATCAGCACAAATGCTCTTGGTTATGGTGCATTTCT 1419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 CAGAGTATCTGTGACGGTCCCATCTATCAGCACAAATGCTCTTGGTTATGGTGCATTTCT 1198 Query 1420 TGGAATATATGCCAACTTGAGATATCAGCTGTTATGTGGATTTGAAAGAGGAGTGAGCAG 1479 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TGGAATATATGCGAACTTGAGATATCAGCTGTTATGTGGATTTGAAAGAGGAGTGAGCAG 1258 Query 1480 TCACTTTGACGTCATAGGAGTAGCACTCTTCTTCGGCACTGCCTTGAGGATTATGAATGT 1539 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1259 CCACTTTGATGTCATAGGAGTTGCACTCTTCTTCGGCACTGCCTTGAGGATTATGAATGT 1318 Query 1540 GCAATTAGGGGAAAAGTCAAGACAAGTATGGCTAGGTGTAGAGGCAGACCCACTGGCGCA 1599 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1319 TCAATTAGGGGAAAAGTCAAGACAGGTATGGCTAGGTGTGGAGGCAGACCCACTGGCGCA 1378 Query 1600 GTCAGATGATCTGCTGGCAAAAGCATACAACCGACCCTCAGAGGAAGCAGTAGCAAAGCC 1659 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1379 GTCAGATGATCTGCTGGCAAAAGCATACAACCGACCCTCAGAGGAAGCAGTAGCAAAACC 1438 Query 1660 ATCTTCAAAATGGTTCATCTCAAAGAATGCAATTGTCTCAGGGCTACTCGGGAAGAAGCA 1719 |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1439 ATCTTCAAGATGGTTCATCTCAAAGAATGCAATTGTCTCAGGGCTGCTTGGGAAGAAGCA 1498 Query 1720 AGAAGATTCAGTTTCAGATTCTCCACCTCCAAAGGCTCGGCGAAAAAGGATAGTGAGGAA 1779 ||| || |||||||||||| ||||||||||||||||| | ||||||||||| |||||||| Sbjct 1499 AGAGGACTCAGTTTCAGATCCTCCACCTCCAAAGGCTAGACGAAAAAGGATTGTGAGGAA 1558 Query 1780 GAAGGTGGCTGCATCTGCCTCTTAAATAACCAACAAAACCTCTAA 1824 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 GAAGGTGGCTGCATCTGCCTCTTAAATAACCAACAAAACCTCTAA 1603 > Ahg489330 jgi|Araly1|489330|fgenesh2_kg.6__2464__AT5G24680.1 Length=1337 Score = 73.1 bits (39), Expect = 8e-12 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 2086 TTTCTCAATGTTTCTAATAAATAGCCACATCTTATACGTTCGTTG 2130 |||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1337 TTTCTCAATGTTTCTAATAAATAGCCACATCTTATATGTTTGTTG 1293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80141875480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5