BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24750.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942030 jgi|Araly1|942030|scaffold_602574.1 2418 0.0
Ahg925876 jgi|Araly1|925876|scaffold_201437.1 196 4e-49
> Ahg942030 jgi|Araly1|942030|scaffold_602574.1
Length=1612
Score = 2418 bits (1309), Expect = 0.0
Identities = 1525/1626 (94%), Gaps = 27/1626 (2%)
Strand=Plus/Plus
Query 27 CTTCATCGGAGCA-TTGAGCAACACAATGGAGGAGGAACCGGAGAGAAGGAAAGCTATCG 85
||||||||||||| |||||| || | ||||||||||||||||||||||||||||| ||||
Sbjct 1 CTTCATCGGAGCATTTGAGC-AC-C-ATGGAGGAGGAACCGGAGAGAAGGAAAGCCATCG 57
Query 86 CTCTCTTCATGGCTTTCGGTACCAAAGGCGATGTCTACCCTCTCGCTGCCATTGCCGCAG 145
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 58 CTCTCTTCATGGCTTTTGGTACCAAAGGCGATATCTACCCTCTCGCTGCCATTGCCGCAG 117
Query 146 TTTTCGCTCGTGTTCAACAACACTACACTGTGGTTTTGATGTCACATTTGGCTCATGAGA 205
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 CTTTCGCTCGTGTTCAGCAACACTACTCTGTGGTTTTGATGTCACATTTGGCTCATGAGA 177
Query 206 ACCTAAGCTCCCATTTGAGTAAAGCAAAAGTTTCATATTTTCCTATCAATTCTCCTCCTG 265
|||||||||| || |||| |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 178 ACCTAAGCTCTCACTTGAACAAAGCAAACGTTTCCTATCTTCCTATCAATTCTCCTCCTG 237
Query 266 CTCTGTCTAATGAACCTCAGGGTACTCAAAACG--TCA---C-AGACTC-G--CTGAGGA 316
||||||||| ||||||||||||||||||||||| || | | |||| | | | ||
Sbjct 238 CTCTGTCTAGTGAACCTCAGGGTACTCAAAACGCCGCAGGTCAATACTCTGATTTTAAGA 297
Query 317 AAATGTTTTTGGAGGAAAAAGAAAGGATAAAAAGGGAACACAGACAAGAGTGTCATTCTG 376
|| | ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 298 AACTATTTTTGGAGGAAAAAGAAAAGATAAAAAGGGATCACAGAGAAGAGTGTCATTCTG 357
Query 377 CATTCAGAACCATTTTCGGAAAGGATCCTTGTATGGAGGGTGATTTCGTTGTCATAAATT 436
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 CATTCAAAAGCATTTTCGGAAAGGGTCCTTGTATGGAGGGTGATTTCGTTGTCATAAATT 417
Query 437 TCTTTGCATTGGAAGGATGGAGCCTAGCAGAAGTTTTCCAGATCCGTTGTGTGGTGGCTG 496
||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
Sbjct 418 TCTTTGCATTGGAAGGATGGAGCCTTGCAGAACTTTTCCAAATCCGTTGTGTGGTGGCGG 477
Query 497 CTCCTTATGTTGTTCCGTATAGTCCACCATCAGGCTTTGAAAGACAGTTTAGAAAGGAGC 556
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 478 CTCCTTATGTTGTTCCGTATAGTCCACCATCAGGCTTTGAAAGACAGTTTAGGAAGGAAC 537
Query 557 TACCAGATTTATACAAGTACTTGAAAGAAGCCCCCATAGGCAAGGTTAGCTGGAGTGATG 616
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 538 TCCCAGATTTGTACAAGTACTTGAAAGAAGCCCCCATCGGCAAGGTTAGCTGGAGTGATG 597
Query 617 TAACTCATTGGATGTGGCCTCTTTTTACTGAAGAGTGGGGATCATGGCGATATGAGGAAC 676
|||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct 598 TAACTCATTGGATGTGGCCTCTTTTTACTGAAGAATGGGGATCGTGGCGCTACGAGGAAC 657
Query 677 TCAACCTTAGTTGTTACCCTTTTGCAGATCCAGTAACAGACCTTCCAATTTGGCATATCC 736
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 658 TCAACCTAAGTTGTTACCCTTTTGCAGATCCAGTAACAGACCTTCCAATTTGGCGTAGCC 717
Query 737 GGCCGCCATCTCCCTTGGTCTTGTATGGTTTCAGCAAAGAAATCGTTGAATGCCCTGATT 796
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 GGCCGCCATCTCCTTTGGTCTTGTATGGTTTCAGCAAAGAAATCGTCGAATGCCCTGATT 777
Query 797 ACTGGCCATTGAGCGTTCGAGTC-TGCGGCTTTTGGTTTCTGCCCAATGAATGGCAGTTT 855
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 778 ACTGGCCATTGAGCGTTCGAG-CTTGCGGCTTTTGGTTTCTGCCCAATGAATGGCAGTTT 836
Query 856 TCATGCAACGAGTGTGGAGACAATCCTTTTGCAGGGCGCCTGGGTACAGACGATTCACAT 915
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 837 TCATGCAACAAGTGTGGAGACAATCCTTTTACAGGGCGCCTGGGTACAGACGATTCCCAT 896
Query 916 ACATGCTCAAACCACACTGAGTTATATACATTTATATCGTCTTGTGAGCCAGCTCTGCCT 975
||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 897 ACATGCTCAAACCACTCTGAGTTGTATACTTTTATATCGTCTTGTGAGCCAGAACTGCCT 956
Query 976 ATCTTTGTAGGGTTGAGTTCTGTTGGAAGCATGGGCTTTGTAAGGGATCCCATAGCCTTT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATCTTTGTAGGGTTGAGTTCTGTTGGAAGCATGGGCTTTGTAAGGGATCCCATAGCCTTT 1016
Query 1036 CTTCGAGTTCTCCAATCTGTTATTCAGATTACAGGTTACAGATTTATCATTTTCACAGCT 1095
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 CTTCGAGTTCTCCAATCTGTTATCCAGATTACAGGTTACAGATTTATCATTTTCACAGC- 1075
Query 1096 A-GTTATGGACCTTTAGATGCAGCAATTAGGACCATTGCTAATGGATCAGATTCAAGTGA 1154
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1076 AGGTTATGGACCTTTAGATGCAGCAATTTGGACCATTGCTAATAGATCAGATTCAAGTGA 1135
Query 1155 GAAACAACCGTTACATGCGGGAATCTCTATTTTCAACGGCAAGCTTTTCTGCTTCTCTGG 1214
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 GAAACAACCGTTACATGCAGGAATCTCTATTTTCAACGGCAAGCTTTTCTGCTTCCCTGG 1195
Query 1215 TATGGTGCCATACAACTGGATGTTCCGAACATGCGCTGCAGCGATTCATCACGGTGGCAG 1274
||||||||||||||| |||||||| | || |||||||||||| |||||||| ||||||||
Sbjct 1196 TATGGTGCCATACAAGTGGATGTTTCAAAGATGCGCTGCAGCAATTCATCATGGTGGCAG 1255
Query 1275 CGGTTCTGTTGCTGCAGCATTACAGGCTGGAATCCCGCAGATCATATGCCCATTTATGCT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CGGTTCTGTTGCTGCAGCATTACAGGCTGGAATCCCGCAGATCATATGCCCATTTATGCT 1315
Query 1335 GGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGAGTTGCTCCTCAACCATTGAA 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGAGTTGCTCCTCAACCATTGAA 1375
Query 1395 AAGAAACCACCTGCTTCTAGAGGA-CTCAAATGATGAGAAGAACATCACGGAAGCTGCAC 1453
||||| |||||||||||||||||| | |||||||||| || || |||| |||||||||||
Sbjct 1376 AAGAATCCACCTGCTTCTAGAGGAAC-CAAATGATGA-AA-AA-ATCATGGAAGCTGCAC 1431
Query 1454 AAGTGGTAGCGAAAGCCATATACGATGCACTGTCTGCAAAGACTAGGGCTCGTGCCATGG 1513
|||||||||| ||||||||||||||||||||||||||||| | ||||||| |||| ||||
Sbjct 1432 AAGTGGTAGCAAAAGCCATATACGATGCACTGTCTGCAAAAAGTAGGGCTTGTGCGATGG 1491
Query 1514 AAATTGCTGAAATATTATCTCTTGAGGATGGAGTCACAGAAGCTGTGAGAGTGCTTAGAG 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 AAATTGCTGAAATATTATCTCTTGAGGATGGAGTCACAGAAGCTGTGAGAGTGCTTAGAG 1551
Query 1574 AAGAGGTGTGTGTAGTTTCAGGCAGCAACCGAATATTTTGATGAGCATTGTCATATATAC 1633
||||||||||||| || |||||||||||||||| ||| ||||||||| |||||||| |
Sbjct 1552 AAGAGGTGTGTGT--TT-CAGGCAGCAACCGAATGTTTGGATGAGCATCGTCATATA--C 1606
Query 1634 AACGTA 1639
||||||
Sbjct 1607 AACGTA 1612
> Ahg925876 jgi|Araly1|925876|scaffold_201437.1
Length=1657
Score = 196 bits (106), Expect = 4e-49
Identities = 126/135 (93%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 1315 ATCATATGCCCATTTATGCTGGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGA 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 ATCATATGCCCATTTATGCTGGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGT 689
Query 1375 GTTGCTCCTCAACCATTGAAAAGAAACCACCTGCTTCTAGAGGACTCAAATGATGAGAAG 1434
|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 690 GTTGCTCCTCAACCATTGAAAAGATACCACCTGCTTCTGGAGGAAACAAATGATGAGAA- 748
Query 1435 AACATCACGGAAGCT 1449
||||| |||||||
Sbjct 749 --CATCATGGAAGCT 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5