BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24770.1 Length=1415 Score E Sequences producing significant alignments: (Bits) Value Ahg489339 jgi|Araly1|489339|fgenesh2_kg.6__2473__AT5G24770.1 1463 0.0 > Ahg489339 jgi|Araly1|489339|fgenesh2_kg.6__2473__AT5G24770.1 Length=1391 Score = 1463 bits (792), Expect = 0.0 Identities = 975/1060 (92%), Gaps = 25/1060 (2%) Strand=Plus/Plus Query 137 TTAAGCACACAATCTCAACGTGCACTAAAAACGAGTGG-----TGTAAGTGAAAAATATC 191 ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1 TTAAGCACACAGTCTCAACGTGCTCTAAAAACGAGTGGTTCTATGTAAGTGAAAAATATC 60 Query 192 GTCGATTATAAACATTATGGGACCAGTAGCATTTGTTGCACCAATCGAAAACAGACA-AG 250 |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | Sbjct 61 GTCGATTATAAACATTATCGGACCAGTAGCATTTGTTGCACCAATCGAAAACACACACA- 119 Query 251 CACACATATCTCCTCATTTCTCATCTGGCTTC-T---TAATCATTTCTCATAACCCCACC 306 | || ||| ||||||||| |||||| | || | ||| || | || | |||||||| Sbjct 120 TATACTTATAGCCTCATTTCCCATCTGTCGTCATAAGTAACCA-TACT--T-ACCCCACC 175 Query 307 TCATTATAAATACCACCCTTTGCGTCACACATATAAACATCACAAACTAAACAATAAACC 366 |||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| Sbjct 176 TCATTATAAATACCACCCTTTGTGTCACACAAATAAGCATCACAAACTAAACAATAAACC 235 Query 367 ----ATACCATAAAAAACATGAAAATCCTCTCACTTTCACTTCTCTTGCTCTTGGCCGCT 422 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 ATATATACCACAAAAAACATGAAAATCCTCTCACTTTCACTTCTCTTGCTCTTGGCCGCT 295 Query 423 ACGGTCTCGGCATCCGTTCCAGGGCTCATCGAACTCGTCGATTCGAAAACCATCTTTGGG 482 |||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| Sbjct 296 ACGGTCTCGGCATCCGTTCCAGAGCTCATCGAACTCGTCGAATCGAACACCATCTTTGGG 355 Query 483 AACGTAGCCGAACTCTTAGAGAAAGAGAAACTTTCCATCAACTACGC-CAACTGCAGAAG 541 |||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct 356 AACGAAGCCGAACTCTTAGAGAAAGAGAAACTTACCATCAACTAC-CACAACTGCAGAAG 414 Query 542 CTGGCACCTTGGTGTTGAGACCTCTAACATCATAGACTTCGACACGGTGCCCGCAAATTG 601 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 415 CTGGCACCTTGGTGTTGAGACCTCTAACATCATAGACTTCGACACCGTGCCCGCAAATTG 474 Query 602 CAAAGACTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAATAC-GACTCCAAAA 660 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 475 CAAAGACTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAAT-CTGACTCCAAAA 533 Query 661 CCGTGTGCAAAGAGGCTTATTTCTATGCCAAAGGACTTGCCCTAAAGAACGACACCGTCA 720 | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 534 CGGTGTGCAAAGAGGCTTATTTCTACGCCAAAGGACTTGCCCTAAAGAACGATACCGTCA 593 Query 721 ATGTTTGGATCTTTGACCTAGATGATACCCTCCTCTCTAGTATTCCCTACTACGCAAAAT 780 |||||||||||||||||||||| || || |||||||||||||| ||||||||||| |||| Sbjct 594 ATGTTTGGATCTTTGACCTAGACGACACTCTCCTCTCTAGTATCCCCTACTACGCCAAAT 653 Query 781 ATGGATACGGAACAGAGAAGACCGACCCGGGGGCGTACTGGTTGTGGTTAGGGACCGGAG 840 |||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||| Sbjct 654 ATGGATACGGGACACAGAAGACCGACCCGGGAGCATACTGGTTGTGGTTAGGGACCGGAG 713 Query 841 CATCAAC-CCCTGGACTCCCGGAGGCCTTGCATCTTTACCAAAACATCATAGAGCTCGGG 899 ||||||| ||| || || |||||| | |||| ||| ||||||||| || |||| |||||| Sbjct 714 CATCAACTCCCGGG-CTTCCGGAGACTTTGCTTCTATACCAAAACCTCTTAGAACTCGGG 772 Query 900 ATTGAACCCATCATACTCAGTGACCGTTGGAAGTTGTGGAAGAATGTCACTCTCGACAAT 959 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 773 ATTGAACCCATCATACTCAGTGACCGTTGGAAATTGTGGAAGAATGTCACTCTCGAGAAT 832 Query 960 CTCGAAGCTGCTGGCGTGACCTACTGGAAGCATCTCATATTGAAGCCTAATGGTTCGAAC 1019 || || |||||||| |||||||||||||||||||||||||| ||||| || |||||||| Sbjct 833 CTTGAGGCTGCTGGTGTGACCTACTGGAAGCATCTCATATTAAAGCCAAACGGTTCGAAA 892 Query 1020 TTGAGGCAAGTGGTGTACAAGTCAAAGGTGAGGAAGAGTCTCGTGAAGAAAGGATACAAC 1079 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 893 TTGAGGCAAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGAAGAAAGGATACAAC 952 Query 1080 ATCGTTGGCAATATCGGAGATCAATGGGCTGATTTGGTTGAGGATACCCCTGGGAGGGTT 1139 |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||| Sbjct 953 ATCGTTGGCAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTT 1012 Query 1140 TTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAAG 1179 |||||||||||||||||||||||||||||||||||||||| Sbjct 1013 TTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAAG 1052 Score = 510 bits (276), Expect = 9e-144 Identities = 321/343 (94%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 1027 AAGTGGTGTACAAGTCAAAGGTGAGGAAGAGTCTCGTGAAGAAAGGATACAACATCGTTG 1086 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1050 AAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGAAGAAAGGATACAACATCGTTG 1109 Query 1087 GCAATATCGGAGATCAATGGGCTGATTTGGTTGAGGATACCCCTGGGAGGGTTTTTAAGC 1146 | ||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 1110 GGAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTCTTTAAGC 1169 Query 1147 TCCCAAATCCACTCTACTACGTACCTTCTTAAGAATCTATCTTCATCGCATTGTCCCCTT 1206 ||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||| Sbjct 1170 TCCCAAATCCACTCTACTACGTACCTTCTTAAGTATCTATGTTCATGGCTTTGTCCCCTT 1229 Query 1207 GTATACACTTCATATCTATGTCGTTT-CGTTTATCTTTGTAGCCGTTTTGGCACCGCTGC 1265 |||| |||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||| Sbjct 1230 GTATCCACTCCATATCTATGTC-TTTCCGTTTATCTTTATAGCCGTTTTGGCACCGCTGC 1288 Query 1266 ATAAATAAAATGTCTATCCTATCGTAACTTAATAAGTACAAAGACTTCGTACTAAATGTT 1325 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1289 ATAAATAAAATGTCTATCCTATCGTAACTTAATAAGAACAAAGACTTCGTACTAAATGTT 1348 Query 1326 GTTTTTCTTTAAAGGGGTCATTAATTAAGTGGCCATGAAATGA 1368 ||||||||||| |||| | |||||| ||||||||||||||||| Sbjct 1349 GTTTTTCTTTATAGGGATAATTAATCAAGTGGCCATGAAATGA 1391 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52907350305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5