BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24850.1 Length=1789 Score E Sequences producing significant alignments: (Bits) Value Ahg894396 jgi|Araly1|894396|Al_scaffold_0006_2392 2580 0.0 > Ahg894396 jgi|Araly1|894396|Al_scaffold_0006_2392 Length=1701 Score = 2580 bits (1397), Expect = 0.0 Identities = 1583/1673 (95%), Gaps = 11/1673 (1%) Strand=Plus/Plus Query 1 AAACCCACTTCGCAGATTCACTCTTCACCATCTTCACCTCTCAAAGAAACCCCTTTCTTC 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 39 AAACCCACTTCGCAGATTCACTCTTCACCATCTTCACCTCTCAAACAAACCCTTTTCTTC 98 Query 61 CTCTTCTCTGTTCCTCTGCTCCGCCGCAAAAATGAACGACCATATCCACCGTGTTCCGGC 120 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || Sbjct 99 TTCTTCTCTGTTCCTCTGCTCCGTCGCAACAATGAACGACCATATCCACCGTGTTCCAGC 158 Query 121 TCTCACCGAGGAAGAGATTGACTCCGTCGCCATAAAAACATTTGAGAGATACGCATTACC 180 ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 159 TCTCAACGAGGAAGAGATTGATTCAGTCGCCATAAAAACATTTGAGAGATACGCATTACC 218 Query 181 TTCTTCTTCCTCCGTTAAGAGAAAGGGGAAAGGAGTAACGATTCTCTGGTTCAGAAACGA 240 |||||||||| || || ||||| || |||||| |||||||||| ||||| |||||||| Sbjct 219 TTCTTCTTCC-ACG--AAAAGAAACGGCAAAGGAATAACGATTCTTTGGTTTAGAAACGA 275 Query 241 TCTCAGAGTTCTTGACAATGACGCATTGTACAAAGCTTGGTCTTCCTCTGATACCATTTT 300 ||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||| Sbjct 276 TCTTAGAGTTCTTGATAACGACGCATTGTACAAAGCTTGGTCTTCCTCTGATACCCTTTT 335 Query 301 GCCTGTTTACTGTCTCGATCCTCGTCTCTTTCACACTACTCATTTCTTCAACTTCCCTAA 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 336 GCCTGTTTACTGTCTCGATCCTCGTCTCTTTCACACTACTCATTTCTTTAACTTCCCTAA 395 Query 361 AACCGGAGCTTTAAGAGGCGGTTTTCTTATGGAATGTTTGGTTGATTTGAGAAAGAATCT 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 396 AACCGGAGCTTTAAGAGGTGGTTTTCTTATGGAATGTTTGGTTGATTTGAGAAAGAATCT 455 Query 421 TATGAAACGAGGATTGAATCTTCTTATTAGAAGTGGTAAACCAGAAGAGATTCTTCCTTC 480 ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 456 TATGAAAAGAGGATTGAATCTTCTTATTCGAAGTGGTAAACCTGAAGAGATTCTTCCTTC 515 Query 481 TCTTGCTAAAGATTTTGGAGCTCGTACAGTTTTTGCGCATAAAGAAACGTGTAGTGAGGA 540 ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| Sbjct 516 TCTTGCTAAAGATTTTGGAGCTCATACAGTCTTTGCTCATAAAGAAACGTGTAGTGAGGA 575 Query 541 GGTAGACGTTGAAAGACTTGTGAATCAAGGTTTGAAAAGG-GTTGGAAATAGTACTAAGC 599 | || | ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| Sbjct 576 GCTACATGTTGAAAGACTTGTGAATCAAGGTTTG-AAAGGAGTTGGAAATGGTACTAAGC 634 Query 600 TTGAGCTCATTTGGGGAAGTACTATGTATCACAAAGATGATCTTCCTTTTGATGTTTTTG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 635 TTGAGCTCATTTGGGGAAGTACTATGTATCACAAAGATGATCTTCCTTTTGATGTTTTTG 694 Query 660 ACTTGCCTGATGTCTACACTCAGTTTCGTAAGTCGGTGGAAGCTAAGTGTAGTATCAGAA 719 | ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 695 ATTTGCCTGATGTTTACACTCAGTTTCGTAAGTCCGTGGAAGCCAAGTGTAGTATCAGAA 754 Query 720 GCTCTACTCGCATTCCACTATCTCTAGGGCCAACACCTTCTGTTGATGATTGGGGAGATG 779 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 755 GCTCCACTCGCATTCCACTTTCTCTAGGGCCAACACCTTCTGTTGATGATTGGGGAGATG 814 Query 780 TTCCAACTCTTGAGAAACTTGGGGTTGAGCCTCAAGAGGTAACCAGAGGAATGCGATTCG 839 |||||||||||||| ||||||| |||| || |||||||| ||| ||||||||||||||| Sbjct 815 TTCCAACTCTTGAGCAACTTGGAATTGAACCACAAGAGGTGACCCGAGGAATGCGATTCG 874 Query 840 TTGGTGGTGAAAGTGCAGGAGTAGGCAGAGTATTTGAGTACTTTTGGAAAAAGGATCTAT 899 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 875 TGGGTGGTGAAAGTGCAGGAGTAGGCAGAGTATTTGAGTACTTTTGGAAGAAGGATCTAT 934 Query 900 TGAAAGTATACAAAGAGACGAGGAACGGAATGTTAGGACCTGATTATTCGACGAAATTCT 959 |||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 935 TGAAAGTATATAAAGATACGAGAAACGGAATGTTGGGACCTGATTATTCGACGAAATTCT 994 Query 960 CTCCTTGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGGTCCAAAGAT 1019 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 995 CACCATGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGGTCCAAAGAT 1054 Query 1020 ATGAAAAGGAAAGAGTAGCAAATAATTCAACATACTGGGTACTTTTTGAACTAATATGGA 1079 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1055 ATGAAAAGGAAAGAGTAGCAAACAATTCAACATACTGGGTACTTTTTGAATTAATATGGA 1114 Query 1080 GAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAGGTGGCC 1139 | || ||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1115 GGGACTACTTTAGGTTTCTTTCAATTAAGTGTGGAAACTCCCTCTTTCATCTAGGTGGCC 1174 Query 1140 CGAGAAATGTGCAAGGGAAGTGGAGCCAAGATCAGAAACTATTTGAGTCTTGGAGAGATG 1199 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1175 CGAGAAATGTGCAAGGGAAGTGGAGTCAAGATCAAAAACTATTTGAGTCTTGGAGAGATG 1234 Query 1200 CCAAGACAGGGTATCCTCTTATAGATGCAAACATGAAGGAGTTATCCACTACAGGTTTCA 1259 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1235 GCAAGACAGGGTATCCTCTTATAGATGCAAACATGAAGGAGTTATACACTACAGGTTTCA 1294 Query 1260 TGTCAAATCGAGGCCGACAGATTGTTTGTTCGTTTCTTGTCCGGGACATGGGGTTGGATT 1319 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1295 TGTCAAATCGAGGCCGACAGATAGTTTGTTCGTTTCTTGTCCGGGACATGGGGTTGGATT 1354 Query 1320 GGCGTATGGGTGCAGAATGGTTTGAGACATGTCTATTAGACTATGATCCTTGTTCTAATT 1379 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1355 GGCGCATGGGTGCAGAATGGTTTGAGACATGTCTATTAGACTATGATCCATGTTCTAATT 1414 Query 1380 ATGGAAACTGGACCTATGGAGCAGGAGTTGGAAATGATCCACGGGAAGACCGGTACTTCA 1439 | || ||||||||||||||||||||||| ||||||||||| || |||||||||||||||| Sbjct 1415 ACGGTAACTGGACCTATGGAGCAGGAGTCGGAAATGATCCCCGAGAAGACCGGTACTTCA 1474 Query 1440 GCATTCCCAAGCAAGCACAAAACTATGATCCAGAAGGAGAATACGTTGCGTTTTGGCTGC 1499 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1475 GCATTCCCAAACAAGCACAAAATTATGATCCAGAAGGAGAATACGTTGCGTTTTGGCTGC 1534 Query 1500 AGCAGCTACGTCGGCTTCCGAAAGAGAAAAGACATTGGCCAGGGAGATTGATGTATATGG 1559 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1535 AGCAGCTACGCCGGCTTCCGAAAGAGAAAAGACATTGGCCAGGGAGATTGATGTATATGG 1594 Query 1560 ACACAGTTGTGCCATTGAAGCATGGTAATGGTCCAATGGCTGGAGGGTCAAAGTCTGGGG 1619 |||||||||||||||||||||||||| | ||||||||||||||| |||||||| | Sbjct 1595 ACACAGTTGTGCCATTGAAGCATGGTCA------AATGGCTGGAGGGTCCAAGTCTGGTG 1648 Query 1620 GTGGCTTCAGAGGGAGTCACAGTGGGAGACGTTCTAGACACAATGGTCCTTAG 1672 |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1649 GTGGTTTCAGAGGGAGTCACAGTGGGAGACGTTCTAGACACAATGGTCCTTAG 1701 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67153101935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5