BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24930.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489353 jgi|Araly1|489353|fgenesh2_kg.6__2487__AT5G24930.1 2017 0.0
> Ahg489353 jgi|Araly1|489353|fgenesh2_kg.6__2487__AT5G24930.1
Length=1445
Score = 2017 bits (1092), Expect = 0.0
Identities = 1310/1407 (93%), Gaps = 48/1407 (3%)
Strand=Plus/Plus
Query 1 AATGCCAAGTAATTTCA--TC-AGA-AATAAAATTACGTTGTTTGGCTAAGATTTTACCA 56
||||||||||||||||| || | | ||||||||||||||||||||||||||||| ||||
Sbjct 1 AATGCCAAGTAATTTCATCTCAATACAATAAAATTACGTTGTTTGGCTAAGATTTCACCA 60
Query 57 CGTGTCAACTTTTCATTCGATCTAGATGGATACCCATGGACCCCACATGGATAGACTCAT 116
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTGTCAACATTTCATTCGATCTAGATGGATACCCATGGACCCCACATGGATAGACTCAT 120
Query 117 TGACACGCTCATGTGAAGCCAATAGTAACACCAACCACaaaagaaagagagagagagaga 176
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 121 TGACACGCTCATGTGAAGCC-ATAGTAACACCAACCACAAAAGAAAGAGA-A-AGAGAGA 177
Query 177 cactgaaacatagagagaagaaaaagaagaggtttagagagagaaaaaTGGCGTCAAAGC 236
| | | | | ||| | ||||||||||||||||||||| ||||
Sbjct 178 GA--G-ACCCT--------------GAA-A--CCTAGAGAGAGAAAAATGGCGTCTAAGC 217
Query 237 TCTGCGATTCGTGCAAATCAGCGACGGCGGCGTTATACTGCCGACCAGACGCAGCGTTTC 296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 218 TCTGCGATTCGTGCAAATCGGCGACGGCGGCGTTATACTGCCGACCAGACGCAGCGTTTC 277
Query 297 TATGCTTAAGCTGCGATTCAAAAGTCCACGCGGCGAACAAACTCGCGTCACGACACGCGC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TATGCTTAAGCTGCGATTCAAAAGTCCACGCGGCGAACAAACTCGCGTCACGACACGCGC 337
Query 357 GCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCACGTGCAAAGCAGACG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCACGTGCAAAGCAGACG 397
Query 417 CGGCCGCGTTATGCGTCACGTGCGACCGTGATATCCACTCGGCTAATCCGTTAGCTCGCC 476
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 398 CGGCCGCGTTATGCGTCACGTGCGACCGTGATATTCACTCGGCTAATCCGTTAGCTCGCC 457
Query 477 GTCACGAACGCGTTCCCGTTACTCCGTTTTACGATTCCGTCTCTAGTGACGGTTCCGTTA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GTCACGAACGCGTTCCCGTTACTCCGTTTTACGATTCCGTCTCTAGTGACGGTTCCGTTA 517
Query 537 AACACACCGCCGTTAATTTCCTTGACGACTGTTACTTCTCCGATATAGATGGTAACGGAA 596
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 518 AACATACCGCCGTTAATTTCCTTGACGACTGTTACTTCTCCGATATAGACGGTAACGGAA 577
Query 597 GCCGTGAAGAAGAGGAGGAAGAAGCTGCTTCGTGGCTGTTACTTCCCAATCCAAAGACTA 656
|||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 578 GCCGTGTAGAAGAGGAGGAAGAAGCTGCTTCGTGGCTG---CTTCCGAATCCGAAGACTA 634
Query 657 CAACGACGGCGACGGCGGGGATCGTTGCTGTTACTTCAGCTGAGGAAGTTCCGGGAGATA 716
| ||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 635 CGACGGCTGCGACGGCGGGGATGGTTGCTGTTACTGCAGCTGAGGAAGTTCCGGGAGATA 694
Query 717 GTCCGGAGATGAACACTGGTCAACAGTATTTGTTCTCGGATCCGGATCCGTATCTGGATC 776
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GTCCGGAGATGAACACGGGTCAACAGTATTTGTTCTCGGATCCGGATCCGTATCTGGATC 754
Query 777 TGGATTATGGAAATGTTGATCCGAAGGTGGAATCGTTAGAGCAGAATAGCTCCGGTACTG 836
||||||| || | ||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 755 TGGATTACGGGAGTGTTGATCCAAAAGTGGAATCGTTGGAGCAGAATAGCTCCGGTACCG 814
Query 837 ATGGTGTTGTTCCGGTGGAGAATCGGACGGTTAGGATTCCGACGGTGAACGAGAATTGCT 896
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 815 ATGGTGTTGTTCCGGTGGAGAATCGGACGGTTAGGGTTCCGACGGTGAACGAGAATTGCT 874
Query 897 TTGAAATGGATTTTACCGGAGGATCTAAAGGCTTTACTTATGGTGGTGGTTACAATTGCA 956
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 875 ATGAAATGGATTTTACCGGAGGATCTAAAGGCTTTGCTTATGGTGGT--T-ACAATTGCA 931
Query 957 TCAGTCACAGCGTGTCATCATCGTCGATGGAAGTGGGAGTGGTGCCAGATGGTGGTTCGG 1016
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 932 TCAGTCACAGCGTCTCATCATCGTCGATGGAAGTGGGAGTGGTGCCAGATGGTGGCTCTG 991
Query 1017 TGGCTGATGTATCGTATCCTTACGGTGGTCCTGCAACCAGTGGAGCTGATCCGGGGA-CA 1075
|||| ||||| |||||||||||||||||||| |||||||||||||| ||||| || | |
Sbjct 992 TGGCCGATGTTTCGTATCCTTACGGTGGTCCGGCAACCAGTGGAGCAGATCCCGGAAGC- 1050
Query 1076 CAGCGGGCTGTTCCGCTGACTTCAGCTgagagagaagcgagggtaatgaggtacagagag 1135
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1051 CAGCGGGCTGTTCCGCTGACTTCAGCTGAGAGAGAGGCGAGGGTAATGAGGTACAGAGAG 1110
Query 1136 aagaggaagaacaggaagtttgagaagaCTATAAGGTATGCTTCAAGGAAAGCGTATGCG 1195
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1111 AAGAGGAAGAACAGGAAGTTTGAGAAGACGATAAGGTATGCTTCAAGGAAAGCTTATGCG 1170
Query 1196 GAAATGAGACCGAGAATCAAGGGACGGTTTGCGAAGCGGACGGATACAAATGAGAGCAAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1171 GAAATGAGACCGAGAATCAAGGGACGGTTTGCGAAGCGGACGGATACAAGTGAGAGCAGT 1230
Query 1256 GATGTGGTTGGTCATGGTGGTATCTTTAGTGGGTTCGGACTTGTACCTACATTTTAGATA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1231 GATGTGGTTGGTCATGGTGGTATCTTTAGTGGGTTCGGACTTGTACCTACGTTTTAGATA 1290
Query 1316 TTGAGAGAGG--GA--GAGACTCTAAAA-TGGAAGATGGTGGGTGGtttggtgtttgttt 1370
||||||||| || |||||||||||| |||||| | ||| | || |||||||||||
Sbjct 1291 TTGAGAGAGAAAGATAGAGACTCTAAAAATGGAAG-T--TGG-T--TT-GGTGTTTGTTT 1343
Query 1371 tagtaataaggtttttaacgaacgttt 1397
||||||||| ||||| |||||||||||
Sbjct 1344 TAGTAATAATGTTTT-AACGAACGTTT 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5