BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24990.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942058 jgi|Araly1|942058|scaffold_602602.1 1240 0.0
> Ahg942058 jgi|Araly1|942058|scaffold_602602.1
Length=932
Score = 1240 bits (671), Expect = 0.0
Identities = 844/925 (91%), Gaps = 21/925 (2%)
Strand=Plus/Plus
Query 36 TCAACAAATCA-CACACGCCATGAACCAAACCAAAACTACCACCG---ACGATAACAAAA 91
||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1 TCAACGAATCACCACACGCCATGAACCAAACCAAAACCACCACCGACAACGATAACAAAA 60
Query 92 ACTCCAAACCGGCCGAAACCGAATCAACCATCACCGTACCGGAATGGATAACCGAAACAA 151
|||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 ACTCCAAACCGGCCAAAACCGAATCAATCACCACCGTACCGGAATGGATAACCGAAACAA 120
Query 152 TCAACGGTGGCTCCTTCTGCCACGTAGATCTCGAGACCGGAACCAACGGCTGGGCTTCAC 211
|||||||||| || ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TCAACGGTGGATCATTCCGCCACGTAGATCTCGAAACCGGAACCAACGGCTGGGCTTCAC 180
Query 212 CACCAGGCAACGTGTTCTCTCTCCGCTCACATAACTACTTCACCGCCACAAAACAAAAAT 271
||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 181 CACCAGGCAACGTCTTCTCTCTCCGCTCCCATAACTACTTCA---CCACAAAACAAAAAT 237
Query 272 CTCCCGGCGGCGATTACCTCCTCTCTCTCGCCGCCGTAGACTGGCTCAAATCCACCACAA 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCCCGGCGGCGATTACCTCCTCTCTCTCGCCGCCGTAGACTGGCTCAAATCCACCACAA 297
Query 332 AGAAACTCGATCACATCCTCTCTCGTCCCGATAACCGTGTAATCCACGCTTTCAAAACAT 391
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 298 ACAAACTCGATCACATCCTCTCTCGTCCCGATAACCGTGTAATCCACGCACTCAAAACCT 357
Query 392 CCCAATCTCGTAGCTTCATCTTCGCCGTTAATTTCCAGGTCCCAGGGAAAGAACACTACA 451
|||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 358 CCCATTCTCGTAGCTTCATCTTCGCCGTCAATTTCCAGATCCCAGGCAAAGAACACTACA 417
Query 452 ACTTGGTCTTCTACTTCGCAACACAAAAACCAATCCCTTCCGATTCACTCCTCCACAAAT 511
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATTTTGTCTTCTACTTCGCAACACAAAAACCAATCCCTTCCGATTCACTCCTCCACAAAT 477
Query 512 TCATCAATACAGACGA-AGATTCGTTTCGCAACGAGAGATTCAAAATCGTTAGCAATGTT 570
|||||||| |||||| || ||| |||||| ||||||||||||| |||||||||||||||
Sbjct 478 TCATCAATGTAGACGACAG-TTCATTTCGCGACGAGAGATTCAAGATCGTTAGCAATGTT 536
Query 571 GTGAAAGGTCCTTGGGTTGTTAAAGCAGCAGCTGGGAAATTTGGTGCATTTGTTGCTGGG 630
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 537 GTGAAAGGTCCTTGGGTTGTTAAAGCAGCAGCTGGGAAATTTGGTGCGTTTGTTGTTGGT 596
Query 631 AAGGCTATGAAGTGTACTTATTATAGAGGAGATAATTATTTTGAGGTTGATGTTGATATA 690
||| || |||| |||| |||||||||||||| | ||||||||||| |||||||||||||
Sbjct 597 AAGACTGTGAAATGTAGTTATTATAGAGGAGTTGATTATTTTGAGATTGATGTTGATATT 656
Query 691 AGTAGCTCGGCGATTATGACGGCGCTTATTAGGTTTATGTTGGGGTATGTTACGTA-TTT 749
||||||||||||||| || |||||||| | ||||| |||||||||||||||||| | |||
Sbjct 657 AGTAGCTCGGCGATTTTGGCGGCGCTTGTGAGGTTGATGTTGGGGTATGTTACG-AGTTT 715
Query 750 AATGGTTGATATTGGTTTTGTTGTGGAAGCGCAAACGGCGGAGGAGTTGCCGGAGAGATT 809
||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 GATGGTTGATGTTTGTTTTGTTGTGGAAGCGCAAACGGAGGAGGAGTTGCCGGAGAGATT 775
Query 810 GATTGGTGGTGCTAGGATTTGTCATATGGAGTTGTCCTCGTCGTTTTTGGTTGATGATGA 869
||||||||||||||||||||||||||||||||| || ||| ||||| | |||||||||||
Sbjct 776 GATTGGTGGTGCTAGGATTTGTCATATGGAGTTATCGTCGGCGTTTGTAGTTGATGATGA 835
Query 870 CGA-GAAGAAGA-GTTTACA-GC--C-ACGGCGGAGAATGATGGGTGCGGCGGAAGATAA 923
|| || || || | | | | | | |||||||||||||||||||| ||||||||| ||
Sbjct 836 TGATGATGATGATGATGAGAAGAAGCGACGGCGGAGAATGATGGGTGTGGCGGAAGAAAA 895
Query 924 CGACGATG-A-GATTTGAGATTTGA 946
|||||||| | ||| |||||||||
Sbjct 896 CGACGATGGAAGAT--GAGATTTGA 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5